mRNA_A-nodosum_M_contig1065.22.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1065.22.1
Unique NamemRNA_A-nodosum_M_contig1065.22.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1065.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1065contigA-nodosum_M_contig1065:127898..132118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1947
Hectar predicted targeting categoryother localisation
Exons3
Cds size1944
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866450.681629-CDS-A-nodosum_M_contig1065:127897..1285871680866450.681629-CDS-A-nodosum_M_contig1065:127897..128587Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 127898..128587 +
1680866450.6915708-CDS-A-nodosum_M_contig1065:130520..1315791680866450.6915708-CDS-A-nodosum_M_contig1065:130520..131579Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 130521..131579 +
1680866450.7124076-CDS-A-nodosum_M_contig1065:131922..1321171680866450.7124076-CDS-A-nodosum_M_contig1065:131922..132117Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 131923..132117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1065.22.1prot_A-nodosum_M_contig1065.22.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1065 127898..132117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1065.22.1

>prot_A-nodosum_M_contig1065.22.1 ID=prot_A-nodosum_M_contig1065.22.1|Name=mRNA_A-nodosum_M_contig1065.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=648bp
RPERSKQEGQYATSGVPPGWVRGSHTGARVAATARGAAAAAAAARNAANE
GGYEKSFPHRGQAERERMTGRPSWISNSMSAGLGGVDLAGDSAAAREPRV
FDDRFSPPAGDPSRGGMSSSSGSSSGGIFYVASDLDSSTSRGRELEQDAW
ARNQAIQTAQRHMLDRQRQRQQQRDLMALETGQVYPGTLPDQIGGGISSM
MVDQQPQSAYTLQLRQQQQQQMRLRRLHQQHQQQQHRQGFGHQLPLADHV
QHVQQQQARNHLLGDEINSFTRADGVSTAAVSSKGGGVSDVFSTTGAFSS
SAITGRPTLPFPSTPASPRNPPRQPQRHEQQLYNHNYRHRQQQQQQGLGL
GLGLEAGLGLESQRGVDSSSNHVPRVSLLSHQQPQQQPFDGVGSGSALGI
FGQQVGSVGGGSGRGADEGRGPTPSQGLGNLGPLDGLGFDPGRTMPMFGQ
AGNGGDFGSSLVDSPHEPLDPLAGQLLTGLSGVSVGQRQQQLSISGQGSA
ADYGSGLSSLNQRASAVGHGTGTLGVLGAGLGNFGDGVDHAQGVSMSRQA
QLAQLRGLVGSPQRQQQQPEAAGLFYQRQQHQQVQPNPFDFQFQPAAFQG
QFEQAHAGRNSTSTSISRAAATAAVAAVAPFGGSSSSNSGSDVNGGVR
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mRNA from alignment at A-nodosum_M_contig1065:127898..132118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1065.22.1 ID=mRNA_A-nodosum_M_contig1065.22.1|Name=mRNA_A-nodosum_M_contig1065.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4221bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:127898..132118+ (Ascophyllum nodosum dioecious)
CGGCCTGAACGGAGTAAGCAAGAAGGGCAATATGCAACGTCGGGGGTTCC
ACCCGGGTGGGTCCGCGGGTCTCACACCGGCGCGCGCGTGGCTGCCACTG
CACGGGGAGCGGCGGCGGCAGCGGCGGCGGCGCGCAACGCCGCCAACGAG
GGGGGCTACGAGAAGTCGTTCCCGCACCGCGGGCAAGCGGAGCGGGAGCG
TATGACCGGAAGACCGTCGTGGATCTCTAACTCGATGTCGGCGGGACTCG
GTGGGGTTGATTTGGCGGGGGACAGTGCCGCGGCGAGAGAGCCGCGTGTC
TTTGATGATCGATTTTCGCCTCCAGCAGGAGATCCTAGTCGCGGCGGTAT
GAGTAGCAGCAGTGGCAGCAGCAGCGGCGGTATTTTCTACGTCGCTAGCG
ACCTCGACAGCAGCACTAGTCGTGGTCGTGAGCTCGAGCAAGACGCATGG
GCGCGAAATCAGGCCATCCAGACCGCGCAGCGCCATATGTTGGACCGGCA
GAGGCAGCGGCAGCAACAGCGAGACCTGATGGCGCTGGAGACTGGGCAGG
TATACCCCGGCACGCTGCCCGACCAGATTGGCGGTGGGATTTCTTCGATG
ATGGTCGACCAGCAACCACAGTCGGCTTATACCCTCCAGCTTCGGCAGCA
ACAGCAGCAGCAGATGAGGCTTCGACGTCTTCATCAGCAGGTACGATGCT
CAAACGCAACCCCCCTCCACGGTATTATGGTTCATCACAATATGACGAAC
GGCGGAATGAACAGCAGCACTATCTTGATCGGTCGTCGCAAAGCACGTGC
TGCGCTTTTTGGGAAAACTGGCTTTGACGCTTCGCACAGAGTCCAGAGAA
AAATTTGGACAAAATTAAATACTTCGTAACGGATAGTCTGCGCCCACATT
GGCGGAATTCTTTCGGACTTGCATTTGTCGTTGAATTTTGCTCCGACTTG
TCTAAGAGTAGGAATAAAGCTGCCGTATGCTTATTTGTAGTATGGAATTT
TATCGAAGAGTTGGATGTTTTTGGAGCTGTTCCTGTTTGAAAAAAAAATG
AAATTCTTGATTAAGGGCGGGATTCGTTATATTTCCACAACTTCCCGGGG
CACTTTTATTTTATGCGCGGGCACTCATTGGTCGTCGAACTAACGTAGCA
TAATTACAGTACTGCTGATATGATGGTTCATAATGTAGTACTGCATTCAT
ATTAATAATACATAATATGTACCGGTTCCGCTGTAGTCACACATATATGC
GTATACAGGAGTGAACCGTGTACGAATGTACTTGTACCCAAATATAAAAA
TATATGTAAATAAATGTAAACAGCAGTACATATATATGTACTTACCATGG
ATGCATCTGCAAGTACATTAATTACCCTGTTCAGCTGGCAGGTTTGGCAA
GCTTACGCGGTTGATCCATACTCTGTTGTAAGTAAGTGGTGGCCGTAAAT
ACTAATGGTATACATACATACATATTATCAGCAGTAGTACCTGTCTGTTA
CACCAATAAACATAGCTGAATATCAGGTGTCTGTAAAGCATAGTATTTTC
CATAGTTTTTTCTTGTATGTATATATTTAGCCCCACCAGACTAATATTAG
GTCGATCTCTCCCGGCGGATTTCAGAACCAAGGAGCGCAGACTTTTGATG
GCGCACGAGCTTAGACCAAGTACAGAAGCGTTAAACGCGCAGGTGTCTTT
GTGTGAAGACCGTAATTTGTTCGCGAGTGTGTGCATCAAGCACGGTGTCT
TTCAGTCGAGGCGTTCGAAGAGGGTAACTGTTGCGCCGCACAGACTTCCA
ACTACTACAAAATAGATAATTTTTCCATCGTAGCTCGGTTTCGTGTGCTA
TATTTCAGCGGCCACGTCTACCTAACTCCCACATAGGATGCTGCTTGCAG
TTTCGTGAGCTCGGGGGCTTTGTGCGGCGTGAGTGGAATGTATTTGGTAG
GTTGAGACAGGCTTTGGTTCACATCCAGACCACGAACGCTTTCGGCCGCC
GTCCTCGACGCACGCTCAACCGTTTCGGCCGGTGCGCGTAATGTGGGCGT
CCATGTGGGCTGGGATACACGATGTAAAAGAGTTCGGTCGTCTAACTTGA
GCGCTCAGCTCAGGAAAACGCAAACCTGAAACACAGAGTCTCTATCGGTG
CCTGCTACTGTAGCGCACCCCAGACAATCGCACGATTCGGCGCAAATACG
AGTGGCGACGCTTGCACTCCACACATTAGACGAAAATACACGAAATCTTC
AGCAAGCCCATGTCTCTCAACGGCGAACTTAAATATCTTGCGGGTTAGCC
ATCTCTTTTTGTGGGCTGACCTCCATTTCTGCCATCCCTGTCATAAGTGG
TACAGCCCTTGATAAAAGCTGCAATGGCCCAAATGGCGCCATTTCATTCA
AGCAGACATTCAACCACATTTTATTTTATTAGTGTAACCGACAATAATTT
GGAGTATAAAAAACAAAAAACGGGGATCGGGGAACAATCGCACATAGTGC
AGCCTTAAAGGTTGTACCGCAACGCCAACCCCCCCCCCTAAAAAAAACGA
ATAGAACTTACGTGTCTCAAAAATTGTCTTTATGCTTTTACGTCCGCTTC
GTTCCGATCGATGTCCATCGCAGCACCAGCAGCAACAACATCGACAAGGC
TTCGGTCACCAGCTCCCCCTCGCAGATCATGTACAACACGTCCAGCAGCA
GCAGGCAAGGAATCATCTACTTGGTGATGAGATCAACAGCTTTACCAGGG
CAGACGGTGTCAGCACCGCTGCTGTGAGCAGCAAAGGCGGTGGCGTCTCA
GACGTCTTCTCGACCACGGGAGCGTTCAGCAGCTCCGCCATTACAGGCCG
CCCTACCCTCCCCTTCCCCAGCACGCCCGCCTCGCCTAGAAACCCACCCC
GTCAACCTCAACGCCACGAACAACAGCTTTACAATCACAACTATCGTCAT
CGCCAGCAGCAGCAACAGCAGGGGTTAGGTTTAGGTCTAGGGTTAGAAGC
AGGACTAGGGCTCGAATCTCAGCGCGGAGTGGACAGCAGCAGCAACCATG
TCCCGAGGGTGTCCTTGTTGTCCCACCAGCAACCGCAGCAGCAGCCGTTT
GACGGCGTTGGAAGCGGTTCTGCGCTCGGAATATTCGGGCAGCAAGTCGG
AAGCGTCGGCGGAGGTTCAGGGAGGGGTGCGGACGAAGGGAGAGGACCCA
CACCATCCCAAGGCCTAGGAAACCTCGGACCTCTCGACGGTTTGGGCTTC
GACCCGGGGCGGACGATGCCGATGTTTGGGCAGGCTGGGAACGGTGGAGA
CTTCGGTTCGAGCCTGGTCGATTCACCACATGAACCACTTGATCCACTCG
CCGGACAGCTGCTAACGGGCTTATCAGGGGTCAGCGTGGGTCAAAGACAG
CAGCAGTTGAGCATCTCGGGGCAGGGAAGTGCGGCAGATTATGGGTCAGG
GTTGAGCTCCTTGAATCAGCGAGCGAGCGCCGTAGGGCATGGTACCGGTA
CGTTGGGTGTTTTGGGCGCCGGGCTGGGGAACTTTGGTGATGGAGTGGAC
CACGCGCAAGGAGTGTCGATGTCGAGGCAGGCGCAGCTGGCGCAGTTGCG
TGGTCTGGTAGGATCCCCTCAGAGGCAGCAACAGCAGCCTGAAGCGGCGG
GGCTTTTCTACCAGCGGCAGCAGCACCAACAAGTGAGCAGGCAGGGAGTG
CATTCTGGCGCGCAATAGTCACGAATCAGATCGCGTCGCCACAACCTTGC
CGCACGAGATGAAATTGTGACACTGTATGCGCCGTTGATGCTTAGAATGG
CTAAGTTCCCCCTCCCCTTTGGCCCCCTTTTTCCCAGAGTTGCCGTGAAC
CCCAAATCCCTTGCTCGCCCCCCCCCCCCCGTTGTCCATAAACCTCTATA
AACCTTGCTCACAACAATATTTCCCCCTTCTTCGCTGCGCTCGTATCGAA
ACGTTTTATGTATCGCCGATGGTGATGGCGGTGGTGGCGGGCGGGGGGGG
TAAACATATCCGCTCCCGGGAGAAGGTTCAGCCGAATCCTTTCGATTTCC
AGTTCCAGCCCGCCGCTTTCCAGGGGCAGTTCGAGCAGGCCCACGCGGGG
AGGAACTCCACCAGTACCAGCATTAGTAGAGCAGCGGCAACAGCGGCGGT
AGCGGCAGTCGCACCGTTCGGAGGCAGCTCTAGTAGCAATAGTGGCAGTG
ACGTCAATGGCGGTGTTCGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1065:127898..132118+

>mRNA_A-nodosum_M_contig1065.22.1 ID=mRNA_A-nodosum_M_contig1065.22.1|Name=mRNA_A-nodosum_M_contig1065.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1944bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:127898..132118+ (Ascophyllum nodosum dioecious)
CGGCCTGAACGGAGTAAGCAAGAAGGGCAATATGCAACGTCGGGGGTTCC
ACCCGGGTGGGTCCGCGGGTCTCACACCGGCGCGCGCGTGGCTGCCACTG
CACGGGGAGCGGCGGCGGCAGCGGCGGCGGCGCGCAACGCCGCCAACGAG
GGGGGCTACGAGAAGTCGTTCCCGCACCGCGGGCAAGCGGAGCGGGAGCG
TATGACCGGAAGACCGTCGTGGATCTCTAACTCGATGTCGGCGGGACTCG
GTGGGGTTGATTTGGCGGGGGACAGTGCCGCGGCGAGAGAGCCGCGTGTC
TTTGATGATCGATTTTCGCCTCCAGCAGGAGATCCTAGTCGCGGCGGTAT
GAGTAGCAGCAGTGGCAGCAGCAGCGGCGGTATTTTCTACGTCGCTAGCG
ACCTCGACAGCAGCACTAGTCGTGGTCGTGAGCTCGAGCAAGACGCATGG
GCGCGAAATCAGGCCATCCAGACCGCGCAGCGCCATATGTTGGACCGGCA
GAGGCAGCGGCAGCAACAGCGAGACCTGATGGCGCTGGAGACTGGGCAGG
TATACCCCGGCACGCTGCCCGACCAGATTGGCGGTGGGATTTCTTCGATG
ATGGTCGACCAGCAACCACAGTCGGCTTATACCCTCCAGCTTCGGCAGCA
ACAGCAGCAGCAGATGAGGCTTCGACGTCTTCATCAGCAGCACCAGCAGC
AACAACATCGACAAGGCTTCGGTCACCAGCTCCCCCTCGCAGATCATGTA
CAACACGTCCAGCAGCAGCAGGCAAGGAATCATCTACTTGGTGATGAGAT
CAACAGCTTTACCAGGGCAGACGGTGTCAGCACCGCTGCTGTGAGCAGCA
AAGGCGGTGGCGTCTCAGACGTCTTCTCGACCACGGGAGCGTTCAGCAGC
TCCGCCATTACAGGCCGCCCTACCCTCCCCTTCCCCAGCACGCCCGCCTC
GCCTAGAAACCCACCCCGTCAACCTCAACGCCACGAACAACAGCTTTACA
ATCACAACTATCGTCATCGCCAGCAGCAGCAACAGCAGGGGTTAGGTTTA
GGTCTAGGGTTAGAAGCAGGACTAGGGCTCGAATCTCAGCGCGGAGTGGA
CAGCAGCAGCAACCATGTCCCGAGGGTGTCCTTGTTGTCCCACCAGCAAC
CGCAGCAGCAGCCGTTTGACGGCGTTGGAAGCGGTTCTGCGCTCGGAATA
TTCGGGCAGCAAGTCGGAAGCGTCGGCGGAGGTTCAGGGAGGGGTGCGGA
CGAAGGGAGAGGACCCACACCATCCCAAGGCCTAGGAAACCTCGGACCTC
TCGACGGTTTGGGCTTCGACCCGGGGCGGACGATGCCGATGTTTGGGCAG
GCTGGGAACGGTGGAGACTTCGGTTCGAGCCTGGTCGATTCACCACATGA
ACCACTTGATCCACTCGCCGGACAGCTGCTAACGGGCTTATCAGGGGTCA
GCGTGGGTCAAAGACAGCAGCAGTTGAGCATCTCGGGGCAGGGAAGTGCG
GCAGATTATGGGTCAGGGTTGAGCTCCTTGAATCAGCGAGCGAGCGCCGT
AGGGCATGGTACCGGTACGTTGGGTGTTTTGGGCGCCGGGCTGGGGAACT
TTGGTGATGGAGTGGACCACGCGCAAGGAGTGTCGATGTCGAGGCAGGCG
CAGCTGGCGCAGTTGCGTGGTCTGGTAGGATCCCCTCAGAGGCAGCAACA
GCAGCCTGAAGCGGCGGGGCTTTTCTACCAGCGGCAGCAGCACCAACAAG
TTCAGCCGAATCCTTTCGATTTCCAGTTCCAGCCCGCCGCTTTCCAGGGG
CAGTTCGAGCAGGCCCACGCGGGGAGGAACTCCACCAGTACCAGCATTAG
TAGAGCAGCGGCAACAGCGGCGGTAGCGGCAGTCGCACCGTTCGGAGGCA
GCTCTAGTAGCAATAGTGGCAGTGACGTCAATGGCGGTGTTCGG
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