mRNA_A-nodosum_M_contig10649.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10649.1.1
Unique NamemRNA_A-nodosum_M_contig10649.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10649.1.1 vs. uniprot
Match: UPI001C4AC398 (uncharacterized protein LOC122043678 n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4AC398)

HSP 1 Score: 52.4 bits (124), Expect = 8.670e-5
Identity = 29/92 (31.52%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:    1 EQELLKMVIRIGSISEAWRALT---KIANASEEVEYDRAKREFETLGMDASESVADFFTRVHVILMELERHQIPIPDREIQRIVLGSLSPRF 267
            ++++ + V+ + +  +AW+ L    K  +  ++V     + EFE+L M+ SES++D+F+RV  I  +L+R++  + D +I   +L SL PRF
Sbjct:   64 DEKMFEKVVAVTTSKQAWKTLQASFKGFDRVKKVHLQTLRGEFESLRMNDSESISDYFSRVLAITNQLKRYRDDMKDDQIVGKILRSLDPRF 155
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10649.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C4AC3988.670e-531.52uncharacterized protein LOC122043678 n=1 Tax=Zingi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10649contigA-nodosum_M_contig10649:9465..10334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog225117.XP_009343509.1
PFAMsDUF4219,Retrotran_gag_2
Model size618
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.43e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37V5K@33090|Viridiplantae,3GICD@35493|Streptophyta,4JSBY@91835|fabids
Descriptiongag-polypeptide of LTR copia-type
Cds size600
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866450.4966388-UTR-A-nodosum_M_contig10649:9464..94821680866450.4966388-UTR-A-nodosum_M_contig10649:9464..9482Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10649 9465..9482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866450.5101511-CDS-A-nodosum_M_contig10649:9482..99881680866450.5101511-CDS-A-nodosum_M_contig10649:9482..9988Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10649 9483..9988 +
1680866450.520185-CDS-A-nodosum_M_contig10649:10240..103341680866450.520185-CDS-A-nodosum_M_contig10649:10240..10334Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10649 10241..10334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10649.1.1prot_A-nodosum_M_contig10649.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10649 9483..10334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10649.1.1

>prot_A-nodosum_M_contig10649.1.1 ID=prot_A-nodosum_M_contig10649.1.1|Name=mRNA_A-nodosum_M_contig10649.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=200bp
MVIRIGSISEAWRALTKIANASEEVEYDRAKREFETLGMDASESVADFFT
RVHVILMELERHQIPIPDREIQRIVLGSLSPRFPHETSMHAYTGECDLKD
LETGLVRVEKFRSDQIKKGASPHMLAAAYTGSGGAGTGGGTRGRGKRSGR
RSGKRQDDDRDEQQQQQQQRQQHQGRGQPRWSRTTCQRCGEDEHFPAECR
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mRNA from alignment at A-nodosum_M_contig10649:9465..10334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10649.1.1 ID=mRNA_A-nodosum_M_contig10649.1.1|Name=mRNA_A-nodosum_M_contig10649.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=870bp|location=Sequence derived from alignment at A-nodosum_M_contig10649:9465..10334+ (Ascophyllum nodosum dioecious)
GAGCAAGAGTTGTTGAAGATGGTAATCCGGATAGGGTCTATCTCGGAGGC
TTGGCGCGCTCTAACGAAAATCGCGAACGCGTCAGAGGAGGTTGAATACG
ACAGAGCGAAACGCGAATTCGAAACACTTGGAATGGATGCAAGCGAGTCG
GTTGCTGATTTCTTCACACGCGTGCACGTAATTCTGATGGAACTTGAAAG
ACACCAGATCCCAATACCCGACCGCGAGATTCAACGCATTGTGCTTGGAA
GTTTGTCCCCCCGTTTcCCGCATGAGACTAGTATGCATGCGTATACAGGT
GAATGTGATCTTAAAGACCTGGAGACTGGGCTTGTCCGAGTGGAGAAGTT
CCGGTCGGACCAGATCAAGAAGGGCGCTTCCCCACACATGTTAGCCGCTG
CCTATACAGGCAGCGGCGGAGCGGGGACTGGAGGTGGTACCCGTGGACGA
GGCAAGCGCTCAGGCAGGCGCTCGGGCAAGCGCCAAGACGATGATCGCGA
TGAACAACAGCAGCAGCAGCAGCAGTCACCCCCATGGCAGCAGCAGCAGT
CACCCCCATGGCAGCAGCAACGGACACCTGCATGGCAGCAACACCAGCCG
CCTGCATGGCAGCAACACCAGCAGCAACGGTCACCTGCACAGCAGCAGCA
GCACCGGCGACATCCACAGCAGCAACAACAGCAGCGAAGACCACGCCAAC
AGCAGTCCAACCCGTGGGCCAGCTGGGAGAGCCCGCCCGCTCAACAGCAG
TACCGGAGCGGAGTGCCCCATCAAAGGAGACAACAGCATCAGGGAAGAGG
ACAGCCGCGCTGGTCGCGTACCACGTGTCAGCGGTGCGGCGAGGATGAGC
ATTTcCCCGCTGAGTGCAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10649:9465..10334+

>mRNA_A-nodosum_M_contig10649.1.1 ID=mRNA_A-nodosum_M_contig10649.1.1|Name=mRNA_A-nodosum_M_contig10649.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at A-nodosum_M_contig10649:9465..10334+ (Ascophyllum nodosum dioecious)
ATGGTAATCCGGATAGGGTCTATCTCGGAGGCTTGGCGCGCTCTAACGAA
AATCGCGAACGCGTCAGAGGAGGTTGAATACGACAGAGCGAAACGCGAAT
TCGAAACACTTGGAATGGATGCAAGCGAGTCGGTTGCTGATTTCTTCACA
CGCGTGCACGTAATTCTGATGGAACTTGAAAGACACCAGATCCCAATACC
CGACCGCGAGATTCAACGCATTGTGCTTGGAAGTTTGTCCCCCCGTTTcC
CGCATGAGACTAGTATGCATGCGTATACAGGTGAATGTGATCTTAAAGAC
CTGGAGACTGGGCTTGTCCGAGTGGAGAAGTTCCGGTCGGACCAGATCAA
GAAGGGCGCTTCCCCACACATGTTAGCCGCTGCCTATACAGGCAGCGGCG
GAGCGGGGACTGGAGGTGGTACCCGTGGACGAGGCAAGCGCTCAGGCAGG
CGCTCGGGCAAGCGCCAAGACGATGATCGCGATGAACAACAGCAGCAGCA
GCAGCAGAGACAACAGCATCAGGGAAGAGGACAGCCGCGCTGGTCGCGTA
CCACGTGTCAGCGGTGCGGCGAGGATGAGCATTTcCCCGCTGAGTGCAGG
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