mRNA_A-nodosum_M_contig1064.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1064.1.1
Unique NamemRNA_A-nodosum_M_contig1064.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1064.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1064contigA-nodosum_M_contig1064:3357..4841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1242
Hectar predicted targeting categoryother localisation
Exons2
Cds size783
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866449.400309-CDS-A-nodosum_M_contig1064:3356..41391680866449.400309-CDS-A-nodosum_M_contig1064:3356..4139Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1064 3357..4139 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866449.4105475-UTR-A-nodosum_M_contig1064:4139..41601680866449.4105475-UTR-A-nodosum_M_contig1064:4139..4160Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1064 4140..4160 -
1680866449.4238713-UTR-A-nodosum_M_contig1064:4405..48411680866449.4238713-UTR-A-nodosum_M_contig1064:4405..4841Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1064 4406..4841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1064.1.1prot_A-nodosum_M_contig1064.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1064 3357..4139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1064.1.1

>prot_A-nodosum_M_contig1064.1.1 ID=prot_A-nodosum_M_contig1064.1.1|Name=mRNA_A-nodosum_M_contig1064.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=261bp
MIGTSNHRSPAGAGARGAVSAGGSLAGIPWKLNPPVFSGGSVQFRSFEKE
AIIFVDYVGFGHVLKDARKIPVADPSISYAELRSLGFTDDEIDTHRRAYQ
FLRSAITSKVGRGILHRAHSPTEAWKNFQKWRNPDTVSFTQGLHQRFLSY
NMRPDQNPLVILTAPEEMAAQLSQQNFPMAPDQALLQILSILPDLEYEVE
KRTCTTGQRLDRNQVLLKNRTRYDNLQHQRNKEGRRRDAGHAFIADAGSF
GKTGGRSTPRG
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mRNA from alignment at A-nodosum_M_contig1064:3357..4841-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1064.1.1 ID=mRNA_A-nodosum_M_contig1064.1.1|Name=mRNA_A-nodosum_M_contig1064.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1485bp|location=Sequence derived from alignment at A-nodosum_M_contig1064:3357..4841- (Ascophyllum nodosum dioecious)
CCTTCCTCTCTTCCTTGCCCCCTTTGTCCTTCTCCCTTCGGGGGACGACG
ATAATCTATGTTCTTTGTGGTTTAATCTCTCAAAGTCTCTTGCCCGTGAC
AGAGGTCTACGAATACACTAGTACACCCCGGCGCCAGGGTATCCTCGATA
TGTCACGTGGCACAAAAAGCAAGACTATTTCCGGGGTAAAGGACTCTCCG
GTCCAAGACGAATCTGGGTCTGGGGATATGAAGATTGCAGACCTTGTCCG
GATGCTAAGCGGACGTATGGACAACCATTTTGACGAACAAGAAAATATAT
TCAAAGAAAGGGAAAGCCGCTTTGAAACATTCCAAGAGGACATCAAGAAT
ACAAATCAGCGCCTCGAAGAACTACAGCTTCGGGTGCCGCGGGCACGTCT
AACAGACATGGGTATTCAAGAGGGAAAGTCCGTGAGGTGAGGTCGAGGGA
ATCGCTACCGGGGCAGGGAAAATAAGAATTAACCCGCCTAAACCGCAGCG
ACAGCAGCCGCTGCTACCGTCGCAACCACCGCGTTTGCCGCCACAACCGC
CGATGATGCCTCAGTCATCGATGTCTCAGCCACCTCCTCCATCATTGCAG
CCTCCTCTGCTGCAACACTACTAATCGCTGCTTCGCCAATCTCGGCACCT
ACCCTCATCACCGTTTTCGGCTGGTCGACAGCAACTTCATTCCGCACCTT
ACATGATCGGAACGTCAAATCATCGATCGCCCGCAGGTGCTGGAGCTAGG
GGCGCTGTCTCAGCCGGTGGGTCACTTGCAGGCATTCCATGGAAGCTGAA
CCCACCGGTTTTTAGCGGCGGTTCTGTACAGTTCCGCTCTTTCGAGAAAG
AGGCCATCATATTTGTTGACTATGTTGGCTTTGGTCATGTTCTCAAAGAC
GCTCGTAAAATCCCAGTTGCCGATCCCTCTATCTCATATGCCGAGCTAAG
GTCACTAGGTTTTACCGATGATGAGATTGACACGCATCGTAGAGCATATC
AATTTCTGCGATCCGCGATAACGTCTAAAGTAGGTCGAGGCATCCTCCAC
CGCGCCCATTCCCCGACGGAAGCATGGAAAAACTTTCAAAAGTGGCGCAA
CCCAGATACCGTATCTTTCACACAAGGTCTCCACCAACGCTTTCTCTCCT
ACAACATGAGACCAGACCAAAACCCCCTGGTTATCCTAACAGCCCCTGAA
GAGATGGCTGCCCAGCTTTCTCAGCAAAATTTTCCAATGGCCCCTGACCA
AGCTCTCCTCCAAATTCTGTCCATTTTGCCCGATTTGGAGTACGAGGTGG
AAAAACGTACGTGCACCACCGGACAGCGACTAGATCGGAATCAGGTCCTG
CTAAAAAATCGTACGAGGTACGATAATCTTCAACATCAGCGAAATAAGGA
GGGTAGACGAAGGGATGCTGGTCACGCTTTTATTGCGGATGCTGGAAGTT
TCGGGAAGACTGGGGGTCGTAGTACTCCGCGAGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1064:3357..4841-

>mRNA_A-nodosum_M_contig1064.1.1 ID=mRNA_A-nodosum_M_contig1064.1.1|Name=mRNA_A-nodosum_M_contig1064.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=783bp|location=Sequence derived from alignment at A-nodosum_M_contig1064:3357..4841- (Ascophyllum nodosum dioecious)
ATGATCGGAACGTCAAATCATCGATCGCCCGCAGGTGCTGGAGCTAGGGG
CGCTGTCTCAGCCGGTGGGTCACTTGCAGGCATTCCATGGAAGCTGAACC
CACCGGTTTTTAGCGGCGGTTCTGTACAGTTCCGCTCTTTCGAGAAAGAG
GCCATCATATTTGTTGACTATGTTGGCTTTGGTCATGTTCTCAAAGACGC
TCGTAAAATCCCAGTTGCCGATCCCTCTATCTCATATGCCGAGCTAAGGT
CACTAGGTTTTACCGATGATGAGATTGACACGCATCGTAGAGCATATCAA
TTTCTGCGATCCGCGATAACGTCTAAAGTAGGTCGAGGCATCCTCCACCG
CGCCCATTCCCCGACGGAAGCATGGAAAAACTTTCAAAAGTGGCGCAACC
CAGATACCGTATCTTTCACACAAGGTCTCCACCAACGCTTTCTCTCCTAC
AACATGAGACCAGACCAAAACCCCCTGGTTATCCTAACAGCCCCTGAAGA
GATGGCTGCCCAGCTTTCTCAGCAAAATTTTCCAATGGCCCCTGACCAAG
CTCTCCTCCAAATTCTGTCCATTTTGCCCGATTTGGAGTACGAGGTGGAA
AAACGTACGTGCACCACCGGACAGCGACTAGATCGGAATCAGGTCCTGCT
AAAAAATCGTACGAGGTACGATAATCTTCAACATCAGCGAAATAAGGAGG
GTAGACGAAGGGATGCTGGTCACGCTTTTATTGCGGATGCTGGAAGTTTC
GGGAAGACTGGGGGTCGTAGTACTCCGCGAGGC
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