mRNA_A-nodosum_M_contig1061.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1061.2.1
Unique NamemRNA_A-nodosum_M_contig1061.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1061.2.1 vs. uniprot
Match: A0A6H5KC12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC12_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.300e-9
Identity = 44/86 (51.16%), Postives = 53/86 (61.63%), Query Frame = 3 
Query:   30 LRLGLICSQGLVARGGLGLGTACTTGA-------AKTPATVENPWGAAGALAAITANRAATKATNSGWAMAAQLVKKQLVYAGQVS 266
            L+LG++ +QGLVARGG G+G A +T A       AK  A V     AAGALA + A R A KA N+GWA A  L KKQL YA + S
Sbjct:  216 LQLGVLGTQGLVARGGFGMGAAFSTSAVAMGSVSAKARAAVVGD--AAGALAVVAAARTAAKAANAGWAEAGSLAKKQLTYATKAS 299
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1061.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KC12_9PHAE5.300e-951.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1061contigA-nodosum_M_contig1061:24661..26037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size741
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_002920.1
Cds size600
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866447.0101542-UTR-A-nodosum_M_contig1061:24660..247991680866447.0101542-UTR-A-nodosum_M_contig1061:24660..24799Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1061 24661..24799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866447.0218897-CDS-A-nodosum_M_contig1061:24799..249201680866447.0218897-CDS-A-nodosum_M_contig1061:24799..24920Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1061 24800..24920 +
1680866447.0314562-CDS-A-nodosum_M_contig1061:25478..258721680866447.0314562-CDS-A-nodosum_M_contig1061:25478..25872Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1061 25479..25872 +
1680866447.0397732-CDS-A-nodosum_M_contig1061:25952..260371680866447.0397732-CDS-A-nodosum_M_contig1061:25952..26037Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1061 25953..26037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1061.2.1prot_A-nodosum_M_contig1061.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1061 24800..26037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1061.2.1

>prot_A-nodosum_M_contig1061.2.1 ID=prot_A-nodosum_M_contig1061.2.1|Name=mRNA_A-nodosum_M_contig1061.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=200bp
MGCCGGPGRDHCQQGGHEGNKLRVGDGSATCEEAAGVRGSGVKRFGAPAV
GGARTRRDDRFDDGEVEGGDGTLRATAGRGGKGELSPAPRLLETHQGSAI
ILCLSRRRAGSGGETYWFVFRAREDARRRLHTPATREKNTDTLTILDAAI
NDTVGYIHTYLYISRHVWLFLRRGLPVVSATGGSVTALSTPSPPKASDVA
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mRNA from alignment at A-nodosum_M_contig1061:24661..26037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1061.2.1 ID=mRNA_A-nodosum_M_contig1061.2.1|Name=mRNA_A-nodosum_M_contig1061.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1377bp|location=Sequence derived from alignment at A-nodosum_M_contig1061:24661..26037+ (Ascophyllum nodosum dioecious)
ATGGTTTTTAACCACCTCGCTTGCTGTAGCTGCGGCTCGGATTGATCTGT
AGCCAAGGATTGGTGGCGAGGGGGGGGTTGGGATTGGGGACTGCTTGTAC
CACCGGCGCAGCGAAGACGCCTGCGACGGTGGAAAACCCATGGGGTGCTG
CGGGGGCCCTGGCCGCGATCACTGCCAACAGGGCGGCCACGAAGGCAACA
AACTCCGGGTGGGCGATGGCAGCGCAACTTGTGAAGAAGCAGCTGGTGTA
CGCGGGTCAGGTAGGGGGTCGTATGATTTGGGACATGCACCGCTTACCCG
ATGTGAAGCACGAGGCCGATGTACTACTGCTTACTGGTGTGAAGCGTGCG
TGCGGGAAGGGGGAAGCAATGGAGACGCCTTTGTGTCCCTGTTGACGAAA
GTGTTTTCGTCGTAAAGCGAAGGGCTAGGGCAAAACCCAGTTTTGGATTC
CTCCGGAGAAAAGATCAGGACGTGAGGATAATTTCTTGCCCCTCGGAGAT
ACAGAAAAAATAGAGAGTACAGTGCAGTAGTAGTGGCCAGTGAATGCGGC
GGAATGAGGCTAAATATGATCGATGCTCAATCGCCTTGAGGCTCGTGCTC
TCCGTTCACTGTCCTGCGGCTTGGAAAGAGACAACGACGAGACGAGGTCA
TCATTCGATTCGACGGGGAGGACGGTGAACAAACTCACGTGGTGTCCATC
CCGACACGACCTCCCAACATTAACATATCAACAACGCCCGATGATGCGGT
GAACGAACGCTACAAAGCCTTCTCTACTCGTAGGACACAAGAGTCTTCCT
CATGTTCTCGCGCTACAGGTGTCAAACGATTCGGCGCGCCAGCTGTCGGT
GGCGCACGCACACGCCGGGACGATCGATTTGATGACGGGGAGGTCGAAGG
AGGCGACGGAACACTTCGAGCTACAGCGGGTCGAGGCGGGAAAGGCGAGT
TGTCGCCTGCACCACGACTGCTGGAAACACACCAGGGATCGGCCATTATT
TTGTGCCTATCCCGCCGGCGCGCAGGCTCGGGCGGAGAAACGTATTGGTT
TGTTTTTCGCGCCCGAGAGGATGCGAGACGGCGGTTGCACACTCCCGCGA
CTAGAGAGAAAAACACCGATACTCTCACCATACTTGACGCGGCAATCAAC
GACACAGTAGGTTATATTCATACCTATCTCTATATATCGCGGCATGTTTG
GTTATTTTTGAGGCGGGGGTTGCACACTCCGCGACGTGAAAAACACCGAT
CCGCGACCGGCGGATATCGCGGCATGTTTGGTTATTTTTGAGGCGGGGGT
TGCCTGTCGTGTCCGCGACCGGCGGAAGCGTTACTGCTCTTTCCACCCCC
TCCCCTCCAAAGGCTAGCGATGTCGCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1061:24661..26037+

>mRNA_A-nodosum_M_contig1061.2.1 ID=mRNA_A-nodosum_M_contig1061.2.1|Name=mRNA_A-nodosum_M_contig1061.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at A-nodosum_M_contig1061:24661..26037+ (Ascophyllum nodosum dioecious)
ATGGGGTGCTGCGGGGGCCCTGGCCGCGATCACTGCCAACAGGGCGGCCA
CGAAGGCAACAAACTCCGGGTGGGCGATGGCAGCGCAACTTGTGAAGAAG
CAGCTGGTGTACGCGGGTCAGGTGTCAAACGATTCGGCGCGCCAGCTGTC
GGTGGCGCACGCACACGCCGGGACGATCGATTTGATGACGGGGAGGTCGA
AGGAGGCGACGGAACACTTCGAGCTACAGCGGGTCGAGGCGGGAAAGGCG
AGTTGTCGCCTGCACCACGACTGCTGGAAACACACCAGGGATCGGCCATT
ATTTTGTGCCTATCCCGCCGGCGCGCAGGCTCGGGCGGAGAAACGTATTG
GTTTGTTTTTCGCGCCCGAGAGGATGCGAGACGGCGGTTGCACACTCCCG
CGACTAGAGAGAAAAACACCGATACTCTCACCATACTTGACGCGGCAATC
AACGACACAGTAGGTTATATTCATACCTATCTCTATATATCGCGGCATGT
TTGGTTATTTTTGAGGCGGGGGTTGCCTGTCGTGTCCGCGACCGGCGGAA
GCGTTACTGCTCTTTCCACCCCCTCCCCTCCAAAGGCTAGCGATGTCGCG
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