mRNA_A-nodosum_M_contig106.28.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig106.28.1
Unique NamemRNA_A-nodosum_M_contig106.28.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig106.28.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.220e-22
Identity = 63/159 (39.62%), Postives = 94/159 (59.12%), Query Frame = 1 
Query:    1 KACRKLRETMQ-AAEDRYLDVYACELEEFIVAGDVRGWYGHFKGRWKLQGKKLGSAQCIRDENGKLLRKLDEIRARWRRYFTSLLNTTWAALNRTIIEGLSQKPTALSLGDPPVVGEIKKALRSMANGKAMGPDELPAEPLKLGLSDSSHEILLAFHDI 474
            KA RK R   +  A + + + Y  +LE+    GD  G+Y H K    ++GK+  ++Q I+DE+GK+LR    IR RW R+F  LLNT    ++    + + + PT + L D P + E+++A+R MAN KA+GPD+LPAE +KL L D    +L  FH I
Sbjct:   25 KAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLK-MIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLREVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHAI 181
[Close]
BLAST of mRNA_A-nodosum_M_contig106.28.1 vs. uniprot
Match: A0A6H5KHC4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHC4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.310e-22
Identity = 56/148 (37.84%), Postives = 82/148 (55.41%), Query Frame = 1 
Query:    4 ACRKLRETMQAAEDRYLDVYACELEEFIVAGDVRGWYGHFKGRWKLQGKKLGSAQCIRDENGKLLRKLDEIRARWRRYFTSLLNTTWAALNRTIIEGLSQKPTALS---LGDPPVVGEIKKALRSMANGKAMGPDELPAEPLKLGLSD 438
            AC  ++ T+  +   +L+ Y  ELE      DVRG Y H K    L G++ G  Q + DENG LLR  + I  RWRR+F +LLN+    LN  ++E ++Q+P   +   L   P + E++ A + + N KA+GPD L AE LK+   D
Sbjct:    5 ACTGVKATIATSVYEHLEGYVTELEAIYQDRDVRGLYQHLKRSTGLSGRQAGGQQFVTDENGVLLRNKNAILKRWRRFFDTLLNSKSPTLNPDVVEQVTQRPATRATRRLAAVPDLEEVEVATKGLGNWKAVGPDLLAAELLKVDGDD 152
[Close]
BLAST of mRNA_A-nodosum_M_contig106.28.1 vs. uniprot
Match: A0A6H5JGC2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC2_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.150e-21
Identity = 64/159 (40.25%), Postives = 94/159 (59.12%), Query Frame = 1 
Query:    1 KACRKLRETMQ-AAEDRYLDVYACELEEFIVAGDVRGWYGHFKGRWKLQGKKLGSAQCIRDENGKLLRKLDEIRARWRRYFTSLLNTTWAALNRTIIEGLSQKPTALSLGDPPVVGEIKKALRSMANGKAMGPDELPAEPLKLGLSDSSHEILLAFHDI 474
            KA RK R   +  A + + + Y  +LE+   AGD  G+Y H K    ++GK+  ++Q I+DE+GK+LR    IR RW R+F  LLNT    ++    + + + PT + L D P + E+++A+R MAN KA+GPD LPAE +KL L D    +L  FH I
Sbjct:  175 KAARKKRSIARWRALETFFEGYVRQLEKKRRAGDQAGFYRHLK-MIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDNLPAELIKLFL-DGDQGLLREFHAI 331
[Close]
BLAST of mRNA_A-nodosum_M_contig106.28.1 vs. uniprot
Match: A0A6H5KJR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.560e-21
Identity = 61/159 (38.36%), Postives = 93/159 (58.49%), Query Frame = 1 
Query:    1 KACRKLRETMQ-AAEDRYLDVYACELEEFIVAGDVRGWYGHFKGRWKLQGKKLGSAQCIRDENGKLLRKLDEIRARWRRYFTSLLNTTWAALNRTIIEGLSQKPTALSLGDPPVVGEIKKALRSMANGKAMGPDELPAEPLKLGLSDSSHEILLAFHDI 474
            KA RK R   +  A +++ + Y  +LE+    GD  G+Y H K    ++GK+  ++Q  +DE+GK++R    IR RW R+F  LLNT    ++    + + Q PT + L D P + E+++A+R MAN KA+GPD+LPAE + L L D    +L  FH I
Sbjct:    3 KAARKKRSIARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLK-MIDVEGKRSFTSQNTKDEDGKVIRDPTFIRQRWARWFHXLLNTKSPTIDLHAADKVKQWPTYVPLDDIPSLPEVEEAVREMANRKAVGPDDLPAELITLFL-DGDQGLLREFHAI 159
[Close]
BLAST of mRNA_A-nodosum_M_contig106.28.1 vs. uniprot
Match: A0A6H5JVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM9_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.000e-21
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 1 
Query:    1 KACRKLRETMQ-AAEDRYLDVYACELEEFIVAGDVRGWYGHFKGRWKLQGKKLGSAQCIRDENGKLLRKLDEIRARWRRYFTSLLNTTWAALNRTIIEGLSQKPTALSLGDPPVVGEIKKALRSMANGKAMGPDELPAEPLKLGLSDSSHEILLAFH 468
            KA RK R   +  A + + + Y  +LE+    GD  G+Y H K    ++GK+  ++Q I+DE+GK+LR    IR RW R+F  LLNT    ++    + + + PT + L D P + E+++A+R MAN KA+G D+LPAE +KL L D    +L AFH
Sbjct:    3 KAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLK-MIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGLDDLPAELIKLFL-DGDQGLLRAFH 157
[Close]
BLAST of mRNA_A-nodosum_M_contig106.28.1 vs. uniprot
Match: A0A6H5JRA2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.330e-21
Identity = 63/159 (39.62%), Postives = 94/159 (59.12%), Query Frame = 1 
Query:    1 KACRKLRETMQ-AAEDRYLDVYACELEEFIVAGDVRGWYGHFKGRWKLQGKKLGSAQCIRDENGKLLRKLDEIRARWRRYFTSLLNTTWAALNRTIIEGLSQKPTALSLGDPPVVGEIKKALRSMANGKAMGPDELPAEPLKLGLSDSSHEILLAFHDI 474
            KA RK R   +  A + + + Y  +LE+    GD  G+Y H K    ++GK+  ++Q I+DE+GK+LR    IR RW R+F  LLNT    ++    + + + PT + L D P + E+++A+R MAN KA+GPD+LPAE +KL L D    +L  FH I
Sbjct:  123 KAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLK-MIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHTI 279
[Close]
BLAST of mRNA_A-nodosum_M_contig106.28.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.760e-21
Identity = 63/159 (39.62%), Postives = 94/159 (59.12%), Query Frame = 1 
Query:    1 KACRKLRETMQ-AAEDRYLDVYACELEEFIVAGDVRGWYGHFKGRWKLQGKKLGSAQCIRDENGKLLRKLDEIRARWRRYFTSLLNTTWAALNRTIIEGLSQKPTALSLGDPPVVGEIKKALRSMANGKAMGPDELPAEPLKLGLSDSSHEILLAFHDI 474
            KA RK R + +  A +++ + Y  +LE+    GD  G+Y H K    ++GK+  ++Q I+DE+GK+LR     R RW R+F  LLNT    ++    + + Q PT + L D P + E+++A+R MAN KA+GPD+LPAE +KL L D     L  FH I
Sbjct:  236 KAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLK-MIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFL-DGDRGFLREFHAI 392
[Close]
BLAST of mRNA_A-nodosum_M_contig106.28.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.820e-21
Identity = 63/159 (39.62%), Postives = 94/159 (59.12%), Query Frame = 1 
Query:    1 KACRKLRETMQ-AAEDRYLDVYACELEEFIVAGDVRGWYGHFKGRWKLQGKKLGSAQCIRDENGKLLRKLDEIRARWRRYFTSLLNTTWAALNRTIIEGLSQKPTALSLGDPPVVGEIKKALRSMANGKAMGPDELPAEPLKLGLSDSSHEILLAFHDI 474
            KA RK R + +  A +++ + Y  +LE+    GD  G+Y H K    ++GK+  ++Q I+DE+GK+LR     R RW R+F  LLNT    ++    + + Q PT + L D P + E+++A+R MAN KA+GPD+LPAE +KL L D     L  FH I
Sbjct:   21 KAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLK-MIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFL-DGDRGFLREFHAI 177
[Close]
BLAST of mRNA_A-nodosum_M_contig106.28.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.840e-21
Identity = 63/159 (39.62%), Postives = 94/159 (59.12%), Query Frame = 1 
Query:    1 KACRKLRETMQ-AAEDRYLDVYACELEEFIVAGDVRGWYGHFKGRWKLQGKKLGSAQCIRDENGKLLRKLDEIRARWRRYFTSLLNTTWAALNRTIIEGLSQKPTALSLGDPPVVGEIKKALRSMANGKAMGPDELPAEPLKLGLSDSSHEILLAFHDI 474
            KA RK R + +  A +++ + Y  +LE+    GD  G+Y H K    ++GK+  ++Q I+DE+GK+LR     R RW R+F  LLNT    ++    + + Q PT + L D P + E+++A+R MAN KA+GPD+LPAE +KL L D     L  FH I
Sbjct:  374 KAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLK-MIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFL-DGDRGFLREFHAI 530
[Close]
BLAST of mRNA_A-nodosum_M_contig106.28.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.890e-21
Identity = 63/159 (39.62%), Postives = 94/159 (59.12%), Query Frame = 1 
Query:    1 KACRKLRETMQ-AAEDRYLDVYACELEEFIVAGDVRGWYGHFKGRWKLQGKKLGSAQCIRDENGKLLRKLDEIRARWRRYFTSLLNTTWAALNRTIIEGLSQKPTALSLGDPPVVGEIKKALRSMANGKAMGPDELPAEPLKLGLSDSSHEILLAFHDI 474
            KA RK R + +  A +++ + Y  +LE+    GD  G+Y H K    ++GK+  ++Q I+DE+GK+LR     R RW R+F  LLNT    ++    + + Q PT + L D P + E+++A+R MAN KA+GPD+LPAE +KL L D     L  FH I
Sbjct:  486 KAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLK-MIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFL-DGDRGFLREFHAI 642
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig106.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L012_9PHAE1.220e-2239.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHC4_9PHAE4.310e-2237.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGC2_9PHAE1.150e-2140.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KJR4_9PHAE3.560e-2138.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVM9_9PHAE4.000e-2139.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRA2_9PHAE5.330e-2139.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8Z5_9PHAE5.760e-2139.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUB0_9PHAE5.820e-2139.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC90_9PHAE5.840e-2139.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE5.890e-2139.62Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig106contigA-nodosum_M_contig106:779555..780028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog13735.ENSPSIP00000000394
PFAMsExo_endo_phos_2,RVT_1
Model size474
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.25e-12
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BHR3@33208|Metazoa,3CUIP@33213|Bilateria,48HP9@7711|Chordata,49EDH@7742|Vertebrata
DescriptionRibonuclease H protein
Cds size447
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866446.2311497-UTR-A-nodosum_M_contig106:779554..7795811680866446.2311497-UTR-A-nodosum_M_contig106:779554..779581Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig106 779555..779581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866446.2406642-CDS-A-nodosum_M_contig106:779581..7800281680866446.2406642-CDS-A-nodosum_M_contig106:779581..780028Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig106 779582..780028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig106.28.1prot_A-nodosum_M_contig106.28.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig106 779582..780028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig106.28.1

>prot_A-nodosum_M_contig106.28.1 ID=prot_A-nodosum_M_contig106.28.1|Name=mRNA_A-nodosum_M_contig106.28.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=149bp
MQAAEDRYLDVYACELEEFIVAGDVRGWYGHFKGRWKLQGKKLGSAQCIR
DENGKLLRKLDEIRARWRRYFTSLLNTTWAALNRTIIEGLSQKPTALSLG
DPPVVGEIKKALRSMANGKAMGPDELPAEPLKLGLSDSSHEILLAFHDI
back to top

mRNA from alignment at A-nodosum_M_contig106:779555..780028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig106.28.1 ID=mRNA_A-nodosum_M_contig106.28.1|Name=mRNA_A-nodosum_M_contig106.28.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at A-nodosum_M_contig106:779555..780028+ (Ascophyllum nodosum dioecious)
AAGGCATGCAGAAAACTCAGGGAGACCATGCAAGCTGCAGAGGACAGGTA
CTTGGATGTTTACGCCTGTGAACTCGAGGAGTTCATCGTAGCCGGTGACG
TAAGAGGCTGGTATGGTCATTTCAAAGGACGATGGAAGTTGCAGGGTAAG
AAATTAGGAAGCGCGCAGTGTATCAGGGACGAGAATGGTAAGCTCCTACG
GAAGCTTGACGAGATCCGTGCGAGGTGGAGACGATATTTCACTTCCTTGC
TCAACACGACCTGGGCCGCCCTCAATCGAACAATTATCGAGGGCCTATCG
CAAAAGCCGACAGCCCTGTCACTTGGAGACCCGCCGGTTGTGGGTGAGAT
AAAAAAGGCCCTGAGATCTATGGCCAATGGCAAGGCTATGGGGCCGGATG
AGCTGCCGGCGGAACCGCTCAAGCTTGGGCTTTCCGACAGTTCCCACGAA
ATCTTGCTCGCATTCCACGACATC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig106:779555..780028+

>mRNA_A-nodosum_M_contig106.28.1 ID=mRNA_A-nodosum_M_contig106.28.1|Name=mRNA_A-nodosum_M_contig106.28.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=447bp|location=Sequence derived from alignment at A-nodosum_M_contig106:779555..780028+ (Ascophyllum nodosum dioecious)
ATGCAAGCTGCAGAGGACAGGTACTTGGATGTTTACGCCTGTGAACTCGA
GGAGTTCATCGTAGCCGGTGACGTAAGAGGCTGGTATGGTCATTTCAAAG
GACGATGGAAGTTGCAGGGTAAGAAATTAGGAAGCGCGCAGTGTATCAGG
GACGAGAATGGTAAGCTCCTACGGAAGCTTGACGAGATCCGTGCGAGGTG
GAGACGATATTTCACTTCCTTGCTCAACACGACCTGGGCCGCCCTCAATC
GAACAATTATCGAGGGCCTATCGCAAAAGCCGACAGCCCTGTCACTTGGA
GACCCGCCGGTTGTGGGTGAGATAAAAAAGGCCCTGAGATCTATGGCCAA
TGGCAAGGCTATGGGGCCGGATGAGCTGCCGGCGGAACCGCTCAAGCTTG
GGCTTTCCGACAGTTCCCACGAAATCTTGCTCGCATTCCACGACATC
back to top