mRNA_A-nodosum_M_contig10597.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10597.2.1
Unique NamemRNA_A-nodosum_M_contig10597.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10597.2.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 6.050e-89
Identity = 149/275 (54.18%), Postives = 197/275 (71.64%), Query Frame = 1
Query:   13 LKGKASIPQRRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRIL-TDDTVLMHVGCTCHRIECVTVLVFDGPGMKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVTQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTGSLVVPLICDLRTGLDS 831
            L  KA  P RR L+ +M E+  +L+  VA ML  +YV++TTDGWTSR+NESY+S TV Y++  W++  L+L+C+K  GST GEDLA  I +MI+ HGLTG V  C TDCEPSMVKAGR+L    + L H+GC+ HR+E  T  VF+G  +  ++A ARAVV RY +SSQ +GRL    GI+ + PL V QDVETRWWS+ +M+ERL+YL +A++LHES DN+AP+L   DW VL L+EP+L PFM  QK LE +  VTGS+ VP I +LR GL++
Sbjct:   41 LNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEA 314          
BLAST of mRNA_A-nodosum_M_contig10597.2.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 2.140e-87
Identity = 144/279 (51.61%), Postives = 196/279 (70.25%), Query Frame = 1
Query:    1 MVRTLKGKASIPQRRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRIL-TDDTVLMHVGCTCHRIECVTVLVFDGPGMKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVTQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTGSLVVPLICDLRTGLDS 831
            MV  L  +A +P RR L++RM  +   L+  VA ML  ++V++TTDGWTSR NESY+S TV Y++ +WK+  L+L C+K  G+T GEDLA  +  M++ H LTG V+ C TDCEPSM+KAGR+L  D + + H+GC+ HR+E  T  VF+G  +  ++ LAR +V RY KSSQ A RL +LCGI+ + PL V QDVETRWWST +MV RL+YL +A++LHES+D V PLL   DW VL L+EP+L PFM  QK LE +  VTGS+ +  + +LR GL++
Sbjct:    1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEA 278          
BLAST of mRNA_A-nodosum_M_contig10597.2.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 2.850e-79
Identity = 130/277 (46.93%), Postives = 188/277 (67.87%), Query Frame = 1
Query:    1 MVRTLKGKASIPQRRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDTVLMHVGCTCHRIECVTVLVFDGPGMKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVTQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTGSLVVPLICDLRTGLD 828
            MVR LK +A++P +R+ + ++  +   L   V   LTG++V++T+DGWTS +N++Y+ FT  Y++ ++ +V L + C K  G T GEDL  +++ MI  +GLT   V   TDCEPSMVKAGR+L ++  + H+GC CHR+E +T   F GPG+ K++ALAR VVTRY  SSQA+ RL+++  IV +   +V QDVETRWWST + + RL+ LRR +  HE +D++ PLL   DW VL+++EP+  PF+  QK  E S +VT SLV+P I DLR  LD
Sbjct:   10 MVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELD 286          
BLAST of mRNA_A-nodosum_M_contig10597.2.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 9.210e-70
Identity = 123/242 (50.83%), Postives = 166/242 (68.60%), Query Frame = 1
Query:  106 LTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDTVLMHVGCTCHRIECVTVLVFDGPGMKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVTQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTGSLVVPLICDLRTGLD 828
            +TG++V++T+DGWT  +N++Y+SFT  Y++ ++ +V L L C K    T GEDL  +++ MI  +GLTG  V   TDCE SMVKAGR+L ++  + H+GC CHR+E +T   F GPG+ K++ALAR VVTRYT SSQA+ RL+++C IV +    V QDVETRWWST   + RL+ LRR +  HE +D+  PLL   DW VL+L+E +L PFM  QK LE S  VT  LV P I DL+ GLD
Sbjct:    1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLD 242          
BLAST of mRNA_A-nodosum_M_contig10597.2.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 1.430e-59
Identity = 108/228 (47.37%), Postives = 143/228 (62.72%), Query Frame = 1
Query:  148 SRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDTVLMHVGCTCHRIECVTVLVFDGPGMKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVTQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTGSLVVPLICDLRTGLD 828
            S +N++Y++FT  Y++ ++ +V L L   K  G T GEDL  +++ MI  +GLTG  V   TDCEP MVKAGR+L ++  + H+GC CHR E +T   F GPG+ K++AL R VVTRYT SSQA+ RL+++C IV +   +V QDVETRWWST                   +D++ PLL   DW VL+L+EP+L PFM  QK LE S  VT SLV   I DLR  LD
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWSTP----------------REIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELD 214          
BLAST of mRNA_A-nodosum_M_contig10597.2.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.280e-42
Identity = 97/239 (40.59%), Postives = 146/239 (61.09%), Query Frame = 1
Query:    1 MVRTLKGKASIPQRRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDD-TVLMHVGCTCHRIECVTVLVFDGPGMKKSMALARAVVTRYTKSSQAAGRLQELCGI-VGIIPLRVTQDVETRWWSTQSMVERLVY-LRRAVELHESLDNVAPLLGPVDWNV 708
            MV  ++  A +P+++  +  M  +   +   V+ ++ G+ V +T+DGWTS AN++Y+S T   +   WK+VTL++ CSK +G+T G+ LA  I+  +  HGLTG V    TDCEPSMVK GR+L  D TV   +GC  +R+E  + +VF+GP +KK M LAR +VTRY  SSQAA RL++     +G+   RV QDV T      S+V   +Y LR ++E  +++D++  L    D NV
Sbjct:    1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVTG-----SLVVPFIYDLRNSLE--DAIDDLVELPPDSDANV 232          
BLAST of mRNA_A-nodosum_M_contig10597.2.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.530e-39
Identity = 103/260 (39.62%), Postives = 138/260 (53.08%), Query Frame = 3
Query:  927 DFNNRFGDGSDILTFREGPRRQPQGFRKVQVMATALDPRCKMLYGVLPNEHEGVWQAVAMAAADIAKSTQASVRTTALSAAGSTPAGPGPGASARPASK-----------------------RFCGGFMAASQAQAASASTVTAAPSLPAEHFLKKAGR-EVTRYRATSGLAMEEAQESGKILYPDTLDWWRINAVKIPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALKNIWSVVEEWQQS 1634
            DF NR+GDG +IL ++EG RRQP GF+ VQV+ATALDPR K+LYGV  +E   VW+ V   A  IA  T+ S      S   S+  GP                                  +  GG       + A +S V           +  + R E+T ++ ++G+ M E  + G  +Y D LDWWR+     P LA LARR+L IPA+QA+SER+FS AG IVT+ RN L+   VELLV L++ W +VEEW+QS
Sbjct:   50 DFINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSEN----SQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLDEGADSSFV---------RLITSSVRVELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQS 296          
BLAST of mRNA_A-nodosum_M_contig10597.2.1 vs. uniprot
Match: A0A224XKI7_9HEMI (Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XKI7_9HEMI)

HSP 1 Score: 113 bits (283), Expect = 6.690e-23
Identity = 75/261 (28.74%), Postives = 133/261 (50.96%), Query Frame = 1
Query:   40 RRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDTVLMHVGCTCHRIECVTVLVFDGPGMKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVTQDVETRWWSTQSMVERLVYLRRAVELHESL-DNVAPLLGPVDWNVLELLEPVLAPFMYVQKKLESNNV-TGSLVVPLICDLR 816
            + +L A  EE L D +  +   LTG+   +TTD WTS   E+YI  T  ++++++K+ +L L CSK   S K ED+A +++ + +  G+   +++  +D   +M KA + L +     H GC  H I  +         ++  +   + +V  + +S  A  +L          PL++ Q+V+TRW ST  M+ER V L  A++   ++ D   P L   +W +L+ +  +L P+  V K +  +   T ++V+PL   LR
Sbjct:  159 KTLLPALYEECLNDTKKKI---LTGKSFCITTDSWTSNNTENYIGVTAHFLDENFKLHSLLLECSKTDASHKAEDIAGTLKRITQYWGIDQKIILAVSDNASNMQKAIQQLLE---WKHFGCFAHTINLIVKDALKCKDIQAIVEKVKRIVEYFRRSCTATEKLSRYQATSRNTPLKLIQEVQTRWNSTYYMLERFVSLEEAIKSTMAIIDKDLPKLNFEEWKILKEMCQILKPYENVTKAISGDKYCTAAIVIPLCNGLR 413          
BLAST of mRNA_A-nodosum_M_contig10597.2.1 vs. uniprot
Match: A0A1X7T780_AMPQE (BED-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T780_AMPQE)

HSP 1 Score: 106 bits (265), Expect = 1.130e-20
Identity = 82/282 (29.08%), Postives = 129/282 (45.74%), Query Frame = 1
Query:   28 SIPQRRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDTVLMHVGCTCHRIECVTVLVFDGPGMKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVTQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAPL------LGPVDWNVLELLEPVLAPFMYVQKKLESN-NVTGSLVVPLI-----CDLRTGLDSER 837
            SI QR+    + EELL  L+          YVS+T+D WTSR  ++YI+ TV ++ + WKM +  L   +      GE +++ + +  +   +   +V    D   +MV A ++L D      + C  H ++       D P + +  A+ R +V  +  S +A   L+E    + I    + QDV TRW ST  M ERL+  R A+      DN+ P       L P  W +L  L  VL P       L  + NV+ SL+ P++     C L+ G D  +
Sbjct:  140 SICQRKFKTVK-EELLTTLESI-------PYVSVTSDIWTSRVTQAYITLTVHFITNTWKMESKVLQTQEMPERHTGEHISLRLSSASQQWKIKDKIVALVRDNAANMVLASQLLDDWD---DMPCFAHTLQLAVKAGLDLPLITRVSAVCRKIVGHFKHSVRAMEALREKQKSMNISQHSLIQDVSTRWNSTYFMYERLIEQRWAIYAVIHDDNITPSDQRHLDLKPEQWELLSQLSVVLKPLQVATTALSKDQNVSSSLIYPVVNGLVKCHLKIGTDDHQ 410          
BLAST of mRNA_A-nodosum_M_contig10597.2.1 vs. uniprot
Match: UPI0006234F41 (zinc finger BED domain-containing protein 4-like n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI0006234F41)

HSP 1 Score: 103 bits (258), Expect = 9.160e-20
Identity = 71/239 (29.71%), Postives = 123/239 (51.46%), Query Frame = 1
Query:  124 SMTTDGWTSR-ANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDTVLMHVGCTCHRIECV-TVLVFDGPGMKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVTQDVETRWWSTQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYVQKKLESNNVTGSLVVPLICDLRTGLDSE 834
            + T+D WT   +NESYISFT+ Y+N+D+++   AL+     GS  GE++A  I  MI+   L     +   D   ++ KA    T +  + +  C  H ++ V T  +     +   +A++R +VT +  S  A  +L+ +   + +  L++ QDV+TRW ST  M++RL  L+RA+ +          L    W++LE    +L PF  + K++ S+    S V+P++  L+  L  E
Sbjct:  161 AFTSDIWTCNISNESYISFTIHYINEDFQLKHAALNVKHFPGSHTGENIAKIITEMIEEWHLNDKNYIIIRDSGANIKKA----TKNLDIQNESCFIHTLQLVVTEALKSQRTVNDLIAVSRKIVTHFNHSPAACYKLKAIQRELNMPTLKLVQDVQTRWNSTFYMLQRLFELKRAISIFTIETEAIVNLSSHQWSLLENCLKLLQPFEEITKEISSSESIISEVIPIVASLKKYLLKE 395          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10597.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUY5_9PHAE6.050e-8954.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI2.140e-8751.61Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JJV8_9PHAE2.850e-7946.93Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE9.210e-7050.83Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE1.430e-5947.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Y8_9PHAE1.280e-4240.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI1_9PHAE3.530e-3939.62Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A224XKI7_9HEMI6.690e-2328.74Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylu... [more]
A0A1X7T780_AMPQE1.130e-2029.08BED-type domain-containing protein n=1 Tax=Amphime... [more]
UPI0006234F419.160e-2029.71zinc finger BED domain-containing protein 4-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10597contigA-nodosum_M_contig10597:5583..7216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCS5
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size1634
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.7e-91
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size921
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866444.4768825-CDS-A-nodosum_M_contig10597:5582..65031680866444.4768825-CDS-A-nodosum_M_contig10597:5582..6503Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10597 5583..6503 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866444.4870229-UTR-A-nodosum_M_contig10597:6503..72161680866444.4870229-UTR-A-nodosum_M_contig10597:6503..7216Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10597 6504..7216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10597.2.1prot_A-nodosum_M_contig10597.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10597 5583..6503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10597.2.1

>prot_A-nodosum_M_contig10597.2.1 ID=prot_A-nodosum_M_contig10597.2.1|Name=mRNA_A-nodosum_M_contig10597.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=307bp
MVRTLKGKASIPQRRVLIARMEELLVDLQGSVATMLTGQYVSMTTDGWTS
RANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNH
GLTGHVVVCNTDCEPSMVKAGRILTDDTVLMHVGCTCHRIECVTVLVFDG
PGMKKSMALARAVVTRYTKSSQAAGRLQELCGIVGIIPLRVTQDVETRWW
STQSMVERLVYLRRAVELHESLDNVAPLLGPVDWNVLELLEPVLAPFMYV
QKKLESNNVTGSLVVPLICDLRTGLDSERKAPQQLTRAHPLMSWRRGYCS
CPASRH*
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mRNA from alignment at A-nodosum_M_contig10597:5583..7216+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10597.2.1 ID=mRNA_A-nodosum_M_contig10597.2.1|Name=mRNA_A-nodosum_M_contig10597.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1634bp|location=Sequence derived from alignment at A-nodosum_M_contig10597:5583..7216+ (Ascophyllum nodosum dioecious)
ATGGTGCGCACGCTTAAAGGCAAGGCCAGCATACCACAGCGACGTGTTTT AATCGCCCGCATGGAGGAACTTCTAGTGGACCTGCAAGGGTCGGTCGCCA CCATGCTGACGGGCCAGTACGTCTCCATGACCACGGACGGATGGACGTCA CGCGCCAACGAGTCCTACATTTCCTTCACCGTCGTGTACGTCAATGACGA TTGGAAGATGGTGACGCTCGCGCTCAGCTGTTCGAAGAAACAAGGTTCGA CGAAGGGGGAAGACCTGGCTATATCCATCGAGACCATGATCAAGAACCAC GGCCTCACCGGGCACGTGGTCGTGTGCAACACGGACTGCGAGCCGTCAAT GGTGAAGGCGGGTCGCATTCTCACCGATGATACCGTATTGATGCACGTTG GGTGCACCTGTCACCGGATCGAGTGCGTCACGGTGCTGGTCTTCGACGGG CCCGGCATGAAGAAGTCCATGGCTCTAGCTCGTGCCGTGGTGACTCGCTA CACAAAGTCCTCACAGGCTGCAGGGCGACTTCAGGAGTTGTGCGGTATAG TCGGCATCATCCCTTTGAGGGTAACTCAGGACGTAGAGACGCGGTGGTGG TCGACGCAGTCGATGGTCGAGCGCCTGGTGTACCTTCGACGTGCTGTTGA GCTGCATGAGTCCCTGGACAACGTCGCCCCCCTGCTAGGGCCGGTGGACT GGAACGTCCTGGAGCTGCTCGAGCCTGTTCTTGCGCCGTTCATGTATGTC CAGAAGAAGCTCGAGTCCAACAACGTGACGGGAAGTTTGGTCGTGCCGCT CATCTGTGACCTCCGTACCGGGTTGGACTCGGAGCGAAAGGCGCCGCAGC AGCTAACCCGGGCGCATCCGCTGATGTCTTGGCGGCGCGGGTATTGCTCC TGCCCTGCGTCGAGGCACTAGCCAAGGATTTCAATAACCGCTTCGGTGAT GGGTCTGACATCTTGACGTTCCGCGAAGGTCCACGACGCCAGCCACAGGG CTTTCGGAAGGTGCAAGTTATGGCGACCGCCCTCGACCCACGGTGCAAGA TGCTGTACGGCGTTCTACCCAACGAGCACGAGGGGGTGTGGCAGGCGGTG GCCATGGCGGCCGCGGACATCGCCAAGAGCACACAGGCATCCGTCCGGAC AACGGCATTGTCAGCGGCTGGATCAACGCCAGCTGGACCTGGGCCTGGGG CATCTGCCCGTCCCGCTAGCAAACGATTTTGCGGCGGCTTCATGGCGGCT TCCCAGGCGCAGGCAGCGTCAGCTTCCACGGTCACCGCCGCGCCGTCGCT GCCGGCTGAGCACTTCCTGAAAAAAGCAGGGAGGGAGGTCACAAGGTATC GGGCGACTAGCGGGTTGGCGATGGAAGAGGCACAGGAGAGCGGAAAGATC CTCTACCCCGACACGCTGGATTGGTGGCGGATAAACGCCGTCAAAATCCC GCTGCTAGCGGCGCTTGCCCGGCGCCTTTTGACCATCCCGGCATCGCAGG CGCAGTCGGAGCGCGTGTTCTCGAGCGCTGGGCAGATTGTCACCCAAACG CGCAACCGCCTGTCATCGGAAAACGTCGAGCTTCTGGTGGCATTGAAGAA CATTTGGAGTGTGGTGGAGGAATGGCAGCAGTCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10597:5583..7216+

>mRNA_A-nodosum_M_contig10597.2.1 ID=mRNA_A-nodosum_M_contig10597.2.1|Name=mRNA_A-nodosum_M_contig10597.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=921bp|location=Sequence derived from alignment at A-nodosum_M_contig10597:5583..7216+ (Ascophyllum nodosum dioecious)
ATGGTGCGCACGCTTAAAGGCAAGGCCAGCATACCACAGCGACGTGTTTT
AATCGCCCGCATGGAGGAACTTCTAGTGGACCTGCAAGGGTCGGTCGCCA
CCATGCTGACGGGCCAGTACGTCTCCATGACCACGGACGGATGGACGTCA
CGCGCCAACGAGTCCTACATTTCCTTCACCGTCGTGTACGTCAATGACGA
TTGGAAGATGGTGACGCTCGCGCTCAGCTGTTCGAAGAAACAAGGTTCGA
CGAAGGGGGAAGACCTGGCTATATCCATCGAGACCATGATCAAGAACCAC
GGCCTCACCGGGCACGTGGTCGTGTGCAACACGGACTGCGAGCCGTCAAT
GGTGAAGGCGGGTCGCATTCTCACCGATGATACCGTATTGATGCACGTTG
GGTGCACCTGTCACCGGATCGAGTGCGTCACGGTGCTGGTCTTCGACGGG
CCCGGCATGAAGAAGTCCATGGCTCTAGCTCGTGCCGTGGTGACTCGCTA
CACAAAGTCCTCACAGGCTGCAGGGCGACTTCAGGAGTTGTGCGGTATAG
TCGGCATCATCCCTTTGAGGGTAACTCAGGACGTAGAGACGCGGTGGTGG
TCGACGCAGTCGATGGTCGAGCGCCTGGTGTACCTTCGACGTGCTGTTGA
GCTGCATGAGTCCCTGGACAACGTCGCCCCCCTGCTAGGGCCGGTGGACT
GGAACGTCCTGGAGCTGCTCGAGCCTGTTCTTGCGCCGTTCATGTATGTC
CAGAAGAAGCTCGAGTCCAACAACGTGACGGGAAGTTTGGTCGTGCCGCT
CATCTGTGACCTCCGTACCGGGTTGGACTCGGAGCGAAAGGCGCCGCAGC
AGCTAACCCGGGCGCATCCGCTGATGTCTTGGCGGCGCGGGTATTGCTCC
TGCCCTGCGTCGAGGCACTAG
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