mRNA_A-nodosum_M_contig1058.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1058.5.1
Unique NamemRNA_A-nodosum_M_contig1058.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: D7FX88_ECTSI (PLCXc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX88_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 5.760e-47
Identity = 81/149 (54.36%), Postives = 109/149 (73.15%), Query Frame = 2
Query:    2 VELPYVFDEDVRNVLQAFLSENPTEAILVFYQINDLGPSTR----TPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVLANDMAREEQNEYDLATLGEVSGKKDLVRNFFLESDSAPAAWGAFRLNYFSGTGASVYPLTVAAGVRAVF 436
            VELPY FD DVR+VL +FL++NPTE +++FYQ+NDL         T E++LQ S+  +P+ W+ G+ +PTL EARGK VL  DM +EEQN+++L++   V+ KK LVR+FFLE    PA  G FRLNY SGTG  VYPLTVAAG+++V+
Sbjct:  188 VELPYGFDVDVRDVLASFLTDNPTETVVMFYQMNDLAGEDSSGGVTAEDTLQASMSQYPDLWLDGAVVPTLEEARGKAVLPTDMGQEEQNDFNLSSFEAVATKKGLVRDFFLEGGGVPADGGPFRLNYLSGTGTYVYPLTVAAGLKSVY 336          
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: UPI0003F4D2DE (phosphatidylinositol-specific phospholipase C domain-containing protein n=1 Tax=Pseudobutyrivibrio ruminis TaxID=46206 RepID=UPI0003F4D2DE)

HSP 1 Score: 61.6 bits (148), Expect = 2.240e-8
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 2
Query:   14 YVFDEDVRNVLQAFLSENPTEAILVFYQINDLGPSTRTPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVLA 232
            Y++ EDV N L  FL ++PTE ++V  +I D   ST   ++ L   + A+ ++W     IPTLG+ RG+ VLA
Sbjct:  134 YIYFEDVANDLYDFLQQHPTETVIVNIKIEDDNHSTSDIQKELLAEIKANKDYWYTEDEIPTLGDVRGRAVLA 206          
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: UPI0009E30A81 (phosphatidylinositol-specific phospholipase C n=1 Tax=Allosalinactinospora lopnorensis TaxID=1352348 RepID=UPI0009E30A81)

HSP 1 Score: 60.1 bits (144), Expect = 9.150e-8
Identity = 51/161 (31.68%), Postives = 75/161 (46.58%), Query Frame = 2
Query:   29 DVRNVLQAFLSENPTEAILVF----YQINDLGPSTRTPEESLQESLDAHPNH--------WIAGST---IPTLGEARGKVVLANDM--------------AREEQNEYDLATLGEVSGKKDLVRNFFLESDSAPAAWGAFRLNYFSGTGASVYPLTVAAGV 424
            DV      FL E+PTE +L+     Y+  +   +TR+  E+L+  L+ +P+         W  G     IPTLGEARGK+VL  D               A + Q+EY + T+ ++  K    R  F ++ S  +   A  +N+ SG G   YP  VA GV
Sbjct:  137 DVLRDTTDFLKEHPTETVLMRLKEEYRAEE---NTRSFAETLEWYLNDNPDTADLAREHLWSPGGDGRRIPTLGEARGKIVLLQDFNGDGAVYGPRWGGPAMDIQDEYRVPTIFDIDDKWHKARAHFEKTGSGDSE--ALSVNFLSGAGVGAYPKEVARGV 292          
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: A0A5Q2NT46_9BACL (1-phosphatidylinositol phosphodiesterase n=1 Tax=Paenibacillus sp. B01 TaxID=2660554 RepID=A0A5Q2NT46_9BACL)

HSP 1 Score: 58.2 bits (139), Expect = 3.340e-7
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 2
Query:   26 EDVRNVLQAFLSENPTEAILVFY-QINDLGPSTRTPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVL 229
            +DV N + AFL+ NPTE +++   + +    +TR+ EE+    +  +P+ W+    +PTLGEARGK+VL
Sbjct:  106 DDVLNAVLAFLNNNPTETVIMSVKEEHTAAENTRSFEETFNAYVSKNPSKWVMTDHVPTLGEARGKIVL 174          
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: UPI00140808D7 (phosphatidylinositol-specific phospholipase C n=1 Tax=Paenibacillus turpanensis TaxID=2689078 RepID=UPI00140808D7)

HSP 1 Score: 58.2 bits (139), Expect = 3.340e-7
Identity = 39/143 (27.27%), Postives = 69/143 (48.25%), Query Frame = 2
Query:   26 EDVRNVLQAFLSENPTEAILVFY-QINDLGPSTRTPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVLAN-----------DMAREEQNE------------YDLATLGEVSGKKDLVRNFFLESDSAPAAWGAFRLNYFSG 382
            +DV N + +FL+ NPTE +++   + +    +TR+ EE+    ++ +P+ W   + +PTLGEARGK+VL             D    ++N              D   + + + K   ++N + E++SA   W    +NY SG
Sbjct:  106 DDVLNAVISFLNANPTETVIMSVKEEHTAAENTRSYEETFNSYVNKNPSKWFMSNRVPTLGEARGKIVLLRRFDAAQLPKGIDATAWKENTTFTIQNAASLKIQDYYKVTDKNKKWTDIQNMYNEANSANPTW--LYINYTSG 246          
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: A0A0K2YQL9_9NOCA (1-phosphatidylinositol phosphodiesterase n=3 Tax=unclassified Rhodococcus TaxID=192944 RepID=A0A0K2YQL9_9NOCA)

HSP 1 Score: 58.2 bits (139), Expect = 3.830e-7
Identity = 52/157 (33.12%), Postives = 75/157 (47.77%), Query Frame = 2
Query:   44 LQAFLSENPTEAILVFYQINDLGPS--TRTPEESLQESLDAHPNH--------WIA-GSTIPTLGEARGKVVLANDMAREE-------------QNEYDLATLGEVSGKKDLVRNFFLESDSAPAAWGAFRLNYFSGTG------ASVYPLTVAAGV 424
            L  FL E+PTE +++  +  +  P+  TR+ E++L   +  +P          W A G+  PTLGEARGK+V+      EE             Q+ Y+L  +G+V  K DLVR  F  + S  A    F +N+ S TG          P+TVA GV
Sbjct:  158 LTDFLREHPTETVVMRLK-EEYTPAENTRSYEDTLNWYIHDNPETGPRLREHLWPADGNRFPTLGEARGKIVVIEGFDAEETFGPRWGTAGMDIQDTYELTGIGDVDRKWDLVRTQFDRAASGDAQ--TFFVNHLSATGNPAALVTGTVPVTVARGV 311          
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: UPI001FD5A334 (phosphatidylinositol-specific phospholipase C n=1 Tax=Hymenobacter sp. 5413J-13 TaxID=2932251 RepID=UPI001FD5A334)

HSP 1 Score: 57.0 bits (136), Expect = 9.080e-7
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 2
Query:   26 EDVRNVLQAFLSENPTEAILVFYQINDLGPS--TRTPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVL 229
            +DVR    AFL  NPTE I++  +  +  PS  TRT E++L   L  + + W   +T+PTLG+ARGK+VL
Sbjct:  125 DDVRTACLAFLQANPTECIIMSIK-EEHTPSNNTRTFEQTLDTYLQKNLDKWYLSATVPTLGQARGKIVL 193          
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: A0A1H4DFE3_9FIRM (1-phosphatidylinositol phosphodiesterase n=1 Tax=Pseudobutyrivibrio sp. ACV-2 TaxID=1520801 RepID=A0A1H4DFE3_9FIRM)

HSP 1 Score: 55.8 bits (133), Expect = 2.390e-6
Identity = 25/72 (34.72%), Postives = 43/72 (59.72%), Query Frame = 2
Query:   14 YVFDEDVRNVLQAFLSENPTEAILVFYQINDLGPSTRTPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVL 229
            Y++ +D    + AFL E+P+E++++  ++ D   S    +  L + +  +  +W   S+IPTLGE RGKVVL
Sbjct:  135 YLYFDDAMEDVYAFLEEHPSESVVINIKMEDDAHSVAEIQSLLLDKIKQNKGYWYTDSSIPTLGEVRGKVVL 206          
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: A0A269W0E9_9BACL (1-phosphatidylinositol phosphodiesterase n=3 Tax=Paenibacillus TaxID=44249 RepID=A0A269W0E9_9BACL)

HSP 1 Score: 55.1 bits (131), Expect = 4.020e-6
Identity = 25/69 (36.23%), Postives = 45/69 (65.22%), Query Frame = 2
Query:   26 EDVRNVLQAFLSENPTEAILVFY-QINDLGPSTRTPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVL 229
            +DV N + +FL+ NPTE +++   + +    +TR+ E++    +  +P+ W+  + +PTLGEARGK+VL
Sbjct:  100 DDVLNAVISFLNNNPTETVIMSVKEEHTAADNTRSYEDTFNWYVSKNPDKWLMTNHVPTLGEARGKIVL 168          
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: UPI00034A04B6 (phosphatidylinositol-specific phospholipase C n=2 Tax=Nocardiopsis TaxID=2013 RepID=UPI00034A04B6)

HSP 1 Score: 55.1 bits (131), Expect = 4.430e-6
Identity = 49/157 (31.21%), Postives = 76/157 (48.41%), Query Frame = 2
Query:   29 DVRNVLQAFLSENPTEAILV-FYQINDLGPSTRTPEESLQESLDAHP-------NH-W--IAGSTIPTLGEARGKVVLANDM-------------AREEQNEYDLATLGEVSGKKDLVRNFFLES-DSAPAAWGAFRLNYFSGTGAS-VYPLTVAAG 421
            DV     AFLSE+PTE +L+   + +    +TRT EE+L   +++ P       +H W    G  +P LGE RGK+V+  D              + + Q++Y + TL ++  K +  R+ F  + D AP       +N+ SG+GA    P  VA G
Sbjct:  127 DVVTDTAAFLSEHPTETVLMRLKKEHTEEENTRTYEETLDHYIESDPETAPLLADHLWRPSGGERVPDLGEVRGKIVILQDFDAGKGYGIRWGGASTDIQDDYRVPTLFDIPDKWEKARSHFERTADGAPET---LYINHLSGSGAPWANPREVATG 280          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX88_ECTSI5.760e-4754.36PLCXc domain-containing protein n=2 Tax=Ectocarpus... [more]
UPI0003F4D2DE2.240e-839.73phosphatidylinositol-specific phospholipase C doma... [more]
UPI0009E30A819.150e-831.68phosphatidylinositol-specific phospholipase C n=1 ... [more]
A0A5Q2NT46_9BACL3.340e-739.131-phosphatidylinositol phosphodiesterase n=1 Tax=P... [more]
UPI00140808D73.340e-727.27phosphatidylinositol-specific phospholipase C n=1 ... [more]
A0A0K2YQL9_9NOCA3.830e-733.121-phosphatidylinositol phosphodiesterase n=3 Tax=u... [more]
UPI001FD5A3349.080e-744.29phosphatidylinositol-specific phospholipase C n=1 ... [more]
A0A1H4DFE3_9FIRM2.390e-634.721-phosphatidylinositol phosphodiesterase n=1 Tax=P... [more]
A0A269W0E9_9BACL4.020e-636.231-phosphatidylinositol phosphodiesterase n=3 Tax=P... [more]
UPI00034A04B64.430e-631.21phosphatidylinositol-specific phospholipase C n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1058contigA-nodosum_M_contig1058:35216..35654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size440
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866440.312458-CDS-A-nodosum_M_contig1058:35215..356531680866440.312458-CDS-A-nodosum_M_contig1058:35215..35653Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1058 35216..35653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1058.5.1prot_A-nodosum_M_contig1058.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1058 35216..35653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1058.5.1

>prot_A-nodosum_M_contig1058.5.1 ID=prot_A-nodosum_M_contig1058.5.1|Name=mRNA_A-nodosum_M_contig1058.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=146bp
RGAAVRLRRGREERPPGLPVREPHGGYPRVLSDQRPRAEYQDARGEPPGI
SGRAPEPLDRGLHDSHPRRGAGQGGPGERHGAGRAERVRLGDAGRGLRQE
GPGPQLLPRKRQRSGGVGCVPLELLFRDGGLGVPSHGGGRGEGGVP
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mRNA from alignment at A-nodosum_M_contig1058:35216..35654+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1058.5.1 ID=mRNA_A-nodosum_M_contig1058.5.1|Name=mRNA_A-nodosum_M_contig1058.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=439bp|location=Sequence derived from alignment at A-nodosum_M_contig1058:35216..35654+ (Ascophyllum nodosum dioecious)
CGTGGAGCTGCCGTACGTCTTCGACGAGGACGTGAGGAACGTCCTCCAGG CCTTCCTGTCCGAGAACCCCACGGAGGCTATCCTCGTGTTCTATCAGATC AACGACCTCGGGCCGAGTACCAGGACGCCCGAGGAGAGCCTCCAGGAATC TCTGGACGCGCACCCGAACCACTGGATCGCGGGCTCCACGATTCCCACCC TCGGCGAGGCGCGGGGCAAGGTGGTCCTGGCGAACGACATGGCGCGGGAA GAGCAGAACGAGTACGACTTGGCGACGCTGGGAGAGGTCTCCGGCAAGAA GGACCTGGTCCGCAACTTCTTCCTCGAAAGCGACAGCGCTCCGGCGGCGT GGGGTGCGTTCCGCTTGAACTACTTTTCCGGGACGGGGGCCTCGGTGTAC CCTCTCACGGTGGCGGCCGGGGTGAGGGCGGTGTTCCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1058:35216..35654+

>mRNA_A-nodosum_M_contig1058.5.1 ID=mRNA_A-nodosum_M_contig1058.5.1|Name=mRNA_A-nodosum_M_contig1058.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at A-nodosum_M_contig1058:35216..35654+ (Ascophyllum nodosum dioecious)
CGTGGAGCTGCCGTACGTCTTCGACGAGGACGTGAGGAACGTCCTCCAGG
CCTTCCTGTCCGAGAACCCCACGGAGGCTATCCTCGTGTTCTATCAGATC
AACGACCTCGGGCCGAGTACCAGGACGCCCGAGGAGAGCCTCCAGGAATC
TCTGGACGCGCACCCGAACCACTGGATCGCGGGCTCCACGATTCCCACCC
TCGGCGAGGCGCGGGGCAAGGTGGTCCTGGCGAACGACATGGCGCGGGAA
GAGCAGAACGAGTACGACTTGGCGACGCTGGGAGAGGTCTCCGGCAAGAA
GGACCTGGTCCGCAACTTCTTCCTCGAAAGCGACAGCGCTCCGGCGGCGT
GGGGTGCGTTCCGCTTGAACTACTTTTCCGGGACGGGGGCCTCGGTGTAC
CCTCTCACGGTGGCGGCCGGGGTGAGGGCGGTGTTCCA
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