mRNA_A-nodosum_M_contig1058.5.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: D7FX88_ECTSI (PLCXc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX88_ECTSI) HSP 1 Score: 165 bits (418), Expect = 5.760e-47 Identity = 81/149 (54.36%), Postives = 109/149 (73.15%), Query Frame = 2
Query: 2 VELPYVFDEDVRNVLQAFLSENPTEAILVFYQINDLGPSTR----TPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVLANDMAREEQNEYDLATLGEVSGKKDLVRNFFLESDSAPAAWGAFRLNYFSGTGASVYPLTVAAGVRAVF 436
VELPY FD DVR+VL +FL++NPTE +++FYQ+NDL T E++LQ S+ +P+ W+ G+ +PTL EARGK VL DM +EEQN+++L++ V+ KK LVR+FFLE PA G FRLNY SGTG VYPLTVAAG+++V+
Sbjct: 188 VELPYGFDVDVRDVLASFLTDNPTETVVMFYQMNDLAGEDSSGGVTAEDTLQASMSQYPDLWLDGAVVPTLEEARGKAVLPTDMGQEEQNDFNLSSFEAVATKKGLVRDFFLEGGGVPADGGPFRLNYLSGTGTYVYPLTVAAGLKSVY 336
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: UPI0003F4D2DE (phosphatidylinositol-specific phospholipase C domain-containing protein n=1 Tax=Pseudobutyrivibrio ruminis TaxID=46206 RepID=UPI0003F4D2DE) HSP 1 Score: 61.6 bits (148), Expect = 2.240e-8 Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 2
Query: 14 YVFDEDVRNVLQAFLSENPTEAILVFYQINDLGPSTRTPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVLA 232
Y++ EDV N L FL ++PTE ++V +I D ST ++ L + A+ ++W IPTLG+ RG+ VLA
Sbjct: 134 YIYFEDVANDLYDFLQQHPTETVIVNIKIEDDNHSTSDIQKELLAEIKANKDYWYTEDEIPTLGDVRGRAVLA 206
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: UPI0009E30A81 (phosphatidylinositol-specific phospholipase C n=1 Tax=Allosalinactinospora lopnorensis TaxID=1352348 RepID=UPI0009E30A81) HSP 1 Score: 60.1 bits (144), Expect = 9.150e-8 Identity = 51/161 (31.68%), Postives = 75/161 (46.58%), Query Frame = 2
Query: 29 DVRNVLQAFLSENPTEAILVF----YQINDLGPSTRTPEESLQESLDAHPNH--------WIAGST---IPTLGEARGKVVLANDM--------------AREEQNEYDLATLGEVSGKKDLVRNFFLESDSAPAAWGAFRLNYFSGTGASVYPLTVAAGV 424
DV FL E+PTE +L+ Y+ + +TR+ E+L+ L+ +P+ W G IPTLGEARGK+VL D A + Q+EY + T+ ++ K R F ++ S + A +N+ SG G YP VA GV
Sbjct: 137 DVLRDTTDFLKEHPTETVLMRLKEEYRAEE---NTRSFAETLEWYLNDNPDTADLAREHLWSPGGDGRRIPTLGEARGKIVLLQDFNGDGAVYGPRWGGPAMDIQDEYRVPTIFDIDDKWHKARAHFEKTGSGDSE--ALSVNFLSGAGVGAYPKEVARGV 292
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: A0A5Q2NT46_9BACL (1-phosphatidylinositol phosphodiesterase n=1 Tax=Paenibacillus sp. B01 TaxID=2660554 RepID=A0A5Q2NT46_9BACL) HSP 1 Score: 58.2 bits (139), Expect = 3.340e-7 Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 2
Query: 26 EDVRNVLQAFLSENPTEAILVFY-QINDLGPSTRTPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVL 229
+DV N + AFL+ NPTE +++ + + +TR+ EE+ + +P+ W+ +PTLGEARGK+VL
Sbjct: 106 DDVLNAVLAFLNNNPTETVIMSVKEEHTAAENTRSFEETFNAYVSKNPSKWVMTDHVPTLGEARGKIVL 174
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: UPI00140808D7 (phosphatidylinositol-specific phospholipase C n=1 Tax=Paenibacillus turpanensis TaxID=2689078 RepID=UPI00140808D7) HSP 1 Score: 58.2 bits (139), Expect = 3.340e-7 Identity = 39/143 (27.27%), Postives = 69/143 (48.25%), Query Frame = 2
Query: 26 EDVRNVLQAFLSENPTEAILVFY-QINDLGPSTRTPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVLAN-----------DMAREEQNE------------YDLATLGEVSGKKDLVRNFFLESDSAPAAWGAFRLNYFSG 382
+DV N + +FL+ NPTE +++ + + +TR+ EE+ ++ +P+ W + +PTLGEARGK+VL D ++N D + + + K ++N + E++SA W +NY SG
Sbjct: 106 DDVLNAVISFLNANPTETVIMSVKEEHTAAENTRSYEETFNSYVNKNPSKWFMSNRVPTLGEARGKIVLLRRFDAAQLPKGIDATAWKENTTFTIQNAASLKIQDYYKVTDKNKKWTDIQNMYNEANSANPTW--LYINYTSG 246
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: A0A0K2YQL9_9NOCA (1-phosphatidylinositol phosphodiesterase n=3 Tax=unclassified Rhodococcus TaxID=192944 RepID=A0A0K2YQL9_9NOCA) HSP 1 Score: 58.2 bits (139), Expect = 3.830e-7 Identity = 52/157 (33.12%), Postives = 75/157 (47.77%), Query Frame = 2
Query: 44 LQAFLSENPTEAILVFYQINDLGPS--TRTPEESLQESLDAHPNH--------WIA-GSTIPTLGEARGKVVLANDMAREE-------------QNEYDLATLGEVSGKKDLVRNFFLESDSAPAAWGAFRLNYFSGTG------ASVYPLTVAAGV 424
L FL E+PTE +++ + + P+ TR+ E++L + +P W A G+ PTLGEARGK+V+ EE Q+ Y+L +G+V K DLVR F + S A F +N+ S TG P+TVA GV
Sbjct: 158 LTDFLREHPTETVVMRLK-EEYTPAENTRSYEDTLNWYIHDNPETGPRLREHLWPADGNRFPTLGEARGKIVVIEGFDAEETFGPRWGTAGMDIQDTYELTGIGDVDRKWDLVRTQFDRAASGDAQ--TFFVNHLSATGNPAALVTGTVPVTVARGV 311
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: UPI001FD5A334 (phosphatidylinositol-specific phospholipase C n=1 Tax=Hymenobacter sp. 5413J-13 TaxID=2932251 RepID=UPI001FD5A334) HSP 1 Score: 57.0 bits (136), Expect = 9.080e-7 Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 2
Query: 26 EDVRNVLQAFLSENPTEAILVFYQINDLGPS--TRTPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVL 229
+DVR AFL NPTE I++ + + PS TRT E++L L + + W +T+PTLG+ARGK+VL
Sbjct: 125 DDVRTACLAFLQANPTECIIMSIK-EEHTPSNNTRTFEQTLDTYLQKNLDKWYLSATVPTLGQARGKIVL 193
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: A0A1H4DFE3_9FIRM (1-phosphatidylinositol phosphodiesterase n=1 Tax=Pseudobutyrivibrio sp. ACV-2 TaxID=1520801 RepID=A0A1H4DFE3_9FIRM) HSP 1 Score: 55.8 bits (133), Expect = 2.390e-6 Identity = 25/72 (34.72%), Postives = 43/72 (59.72%), Query Frame = 2
Query: 14 YVFDEDVRNVLQAFLSENPTEAILVFYQINDLGPSTRTPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVL 229
Y++ +D + AFL E+P+E++++ ++ D S + L + + + +W S+IPTLGE RGKVVL
Sbjct: 135 YLYFDDAMEDVYAFLEEHPSESVVINIKMEDDAHSVAEIQSLLLDKIKQNKGYWYTDSSIPTLGEVRGKVVL 206
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: A0A269W0E9_9BACL (1-phosphatidylinositol phosphodiesterase n=3 Tax=Paenibacillus TaxID=44249 RepID=A0A269W0E9_9BACL) HSP 1 Score: 55.1 bits (131), Expect = 4.020e-6 Identity = 25/69 (36.23%), Postives = 45/69 (65.22%), Query Frame = 2
Query: 26 EDVRNVLQAFLSENPTEAILVFY-QINDLGPSTRTPEESLQESLDAHPNHWIAGSTIPTLGEARGKVVL 229
+DV N + +FL+ NPTE +++ + + +TR+ E++ + +P+ W+ + +PTLGEARGK+VL
Sbjct: 100 DDVLNAVISFLNNNPTETVIMSVKEEHTAADNTRSYEDTFNWYVSKNPDKWLMTNHVPTLGEARGKIVL 168
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Match: UPI00034A04B6 (phosphatidylinositol-specific phospholipase C n=2 Tax=Nocardiopsis TaxID=2013 RepID=UPI00034A04B6) HSP 1 Score: 55.1 bits (131), Expect = 4.430e-6 Identity = 49/157 (31.21%), Postives = 76/157 (48.41%), Query Frame = 2
Query: 29 DVRNVLQAFLSENPTEAILV-FYQINDLGPSTRTPEESLQESLDAHP-------NH-W--IAGSTIPTLGEARGKVVLANDM-------------AREEQNEYDLATLGEVSGKKDLVRNFFLES-DSAPAAWGAFRLNYFSGTGAS-VYPLTVAAG 421
DV AFLSE+PTE +L+ + + +TRT EE+L +++ P +H W G +P LGE RGK+V+ D + + Q++Y + TL ++ K + R+ F + D AP +N+ SG+GA P VA G
Sbjct: 127 DVVTDTAAFLSEHPTETVLMRLKKEHTEEENTRTYEETLDHYIESDPETAPLLADHLWRPSGGERVPDLGEVRGKIVILQDFDAGKGYGIRWGGASTDIQDDYRVPTLFDIPDKWEKARSHFERTADGAPET---LYINHLSGSGAPWANPREVATG 280 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1058.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1058.5.1 >prot_A-nodosum_M_contig1058.5.1 ID=prot_A-nodosum_M_contig1058.5.1|Name=mRNA_A-nodosum_M_contig1058.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=146bp RGAAVRLRRGREERPPGLPVREPHGGYPRVLSDQRPRAEYQDARGEPPGIback to top mRNA from alignment at A-nodosum_M_contig1058:35216..35654+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1058.5.1 ID=mRNA_A-nodosum_M_contig1058.5.1|Name=mRNA_A-nodosum_M_contig1058.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=439bp|location=Sequence derived from alignment at A-nodosum_M_contig1058:35216..35654+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1058:35216..35654+ >mRNA_A-nodosum_M_contig1058.5.1 ID=mRNA_A-nodosum_M_contig1058.5.1|Name=mRNA_A-nodosum_M_contig1058.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at A-nodosum_M_contig1058:35216..35654+ (Ascophyllum nodosum dioecious)back to top |