mRNA_A-nodosum_M_contig1056.27.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1056.27.1
Unique NamemRNA_A-nodosum_M_contig1056.27.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1056.27.1 vs. uniprot
Match: A0A6H5KM42_9PHAE (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM42_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.060e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 AATADADIWHRRLGHMNPRSMELLRRKEGNGVEYTGTISDCDIC 132
            A +  AD+WHRRLGH+NPR+ME+LRR    GV+Y G +S CD C
Sbjct:   50 AMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNC 93
[Close]
BLAST of mRNA_A-nodosum_M_contig1056.27.1 vs. uniprot
Match: A0A6H5JY69_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY69_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.280e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 AATADADIWHRRLGHMNPRSMELLRRKEGNGVEYTGTISDCDIC 132
            A +  AD+WHRRLGH+NPR+ME+LRR    GV+Y G +S CD C
Sbjct:  187 AMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNC 230
[Close]
BLAST of mRNA_A-nodosum_M_contig1056.27.1 vs. uniprot
Match: A0A6H5KP38_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP38_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.990e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 AATADADIWHRRLGHMNPRSMELLRRKEGNGVEYTGTISDCDIC 132
            A +  AD+WHRRLGH+NPR+ME+LRR    GV+Y G +S CD C
Sbjct:  525 AISVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNC 568
[Close]
BLAST of mRNA_A-nodosum_M_contig1056.27.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.990e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 AATADADIWHRRLGHMNPRSMELLRRKEGNGVEYTGTISDCDIC 132
            A +  AD+WHRRLGH+NPR+ME+LRR    GV+Y G +S CD C
Sbjct:  544 AMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNC 587
[Close]
BLAST of mRNA_A-nodosum_M_contig1056.27.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 AATADADIWHRRLGHMNPRSMELLRRKEGNGVEYTGTISDCDIC 132
            A +  AD+WHRRLGH+NPR+ME+LRR    GV+Y G +S CD C
Sbjct:  544 AMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNC 587
[Close]
BLAST of mRNA_A-nodosum_M_contig1056.27.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 AATADADIWHRRLGHMNPRSMELLRRKEGNGVEYTGTISDCDIC 132
            A +  AD+WHRRLGH+NPR+ME+LRR    GV+Y G +S CD C
Sbjct:  544 AMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNC 587
[Close]
BLAST of mRNA_A-nodosum_M_contig1056.27.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 AATADADIWHRRLGHMNPRSMELLRRKEGNGVEYTGTISDCDIC 132
            A +  AD+WHRRLGH+NPR+ME+LRR    GV+Y G +S CD C
Sbjct:  563 AMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNC 606
[Close]
BLAST of mRNA_A-nodosum_M_contig1056.27.1 vs. uniprot
Match: A0A6H5K8D4_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8D4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 AATADADIWHRRLGHMNPRSMELLRRKEGNGVEYTGTISDCDIC 132
            A +  AD+WHRRLGH+NPR+ME+LRR    GV+Y G +S CD C
Sbjct:  644 AMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNC 687
[Close]
BLAST of mRNA_A-nodosum_M_contig1056.27.1 vs. uniprot
Match: A0A6H5KLN6_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 AATADADIWHRRLGHMNPRSMELLRRKEGNGVEYTGTISDCDIC 132
            A +  AD+WHRRLGH+NPR+ME+LRR    GV+Y G +S CD C
Sbjct:  188 AMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNC 231
[Close]
BLAST of mRNA_A-nodosum_M_contig1056.27.1 vs. uniprot
Match: A0A6H5KBQ2_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBQ2_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 AATADADIWHRRLGHMNPRSMELLRRKEGNGVEYTGTISDCDIC 132
            A +  AD+WHRRLGH+NPR+ME+LRR    GV+Y G +S CD C
Sbjct:  201 AMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNC 244
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1056.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KM42_9PHAE1.060e-1259.09gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A6H5JY69_9PHAE4.280e-1259.09Peptidase A2 domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KP38_9PHAE5.990e-1259.09Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KHG5_9PHAE5.990e-1259.09Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5L1Z9_9PHAE6.000e-1259.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3T5_9PHAE6.000e-1259.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN9_9PHAE6.000e-1259.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8D4_9PHAE6.000e-1259.09Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KLN6_9PHAE6.000e-1259.09Peptidase A2 domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KBQ2_9PHAE6.000e-1259.09Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1056contigA-nodosum_M_contig1056:265804..265935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6334.EFV56762
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size132
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000364
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa
DescriptionEncoded by
Cds size132
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866439.6864164-CDS-A-nodosum_M_contig1056:265803..2659351680866439.6864164-CDS-A-nodosum_M_contig1056:265803..265935Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1056 265804..265935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1056.27.1prot_A-nodosum_M_contig1056.27.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1056 265804..265935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1056.27.1

>prot_A-nodosum_M_contig1056.27.1 ID=prot_A-nodosum_M_contig1056.27.1|Name=mRNA_A-nodosum_M_contig1056.27.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=44bp
AATADADIWHRRLGHMNPRSMELLRRKEGNGVEYTGTISDCDIC
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mRNA from alignment at A-nodosum_M_contig1056:265804..265935+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1056.27.1 ID=mRNA_A-nodosum_M_contig1056.27.1|Name=mRNA_A-nodosum_M_contig1056.27.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at A-nodosum_M_contig1056:265804..265935+ (Ascophyllum nodosum dioecious)
GCCGCCACAGCTGACGCCGACATCTGGCACCGAAGACTGGGACACATGAA
TCCCCGCAGCATGGAACTACTCCGCCGAAAGGAAGGAAATGGGGTGGAGT
ACACCGGGACCATATCCGACTGCGACATCTGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1056:265804..265935+

>mRNA_A-nodosum_M_contig1056.27.1 ID=mRNA_A-nodosum_M_contig1056.27.1|Name=mRNA_A-nodosum_M_contig1056.27.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=132bp|location=Sequence derived from alignment at A-nodosum_M_contig1056:265804..265935+ (Ascophyllum nodosum dioecious)
GCCGCCACAGCTGACGCCGACATCTGGCACCGAAGACTGGGACACATGAA
TCCCCGCAGCATGGAACTACTCCGCCGAAAGGAAGGAAATGGGGTGGAGT
ACACCGGGACCATATCCGACTGCGACATCTGT
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