mRNA_A-nodosum_M_contig10530.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10530.1.1 vs. uniprot
Match: A0A6H5KS88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS88_9PHAE) HSP 1 Score: 150 bits (378), Expect = 1.200e-41 Identity = 82/207 (39.61%), Postives = 119/207 (57.49%), Query Frame = 1
Query: 55 QVGRLQEAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRPKHLGKVVVIIVVYVDDLLVLSETKQDEHHALEDLRSSFPIKDLGEISYYLGCHITRDRKARTVMFDQQRYAQTVAERFEIRKTSVIPVSTGKAPLSKADGPQNDAEIAEMRGIPYREVVGALMWVANMTRPDLAYTAHTLAKFGDNPGPEHWKAVMKALQYLK 675
++ RL +++YGL A + K+ +L+ GFE+S +DPCV R +V+ II ++VDD+L TK+ E L S P K+LGE+ ++LGC +RDR+A T+ Q+ Y +V ERF I +TS IP S P + + D E + +P+REVVG LMW+AN TRP+ + T+A+ P WKA K L YLK
Sbjct: 4 KIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG-TKRLAEVIAEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIWSVLERFNICRTSSIPAS----PANDSRSVMEDEEAGD---VPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLK 202
BLAST of mRNA_A-nodosum_M_contig10530.1.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA) HSP 1 Score: 154 bits (389), Expect = 4.060e-41 Identity = 81/218 (37.16%), Postives = 123/218 (56.42%), Query Frame = 1
Query: 28 PDGYRDSPNQVGRLQEAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRPKHLGKVVVIIVVYVDDLLVLSETKQDEHHALEDLRSSFPIKDLGEISYYLGCHITRDRKARTVMFDQQRYAQTVAERFEIR--KTSVIPVSTGKAPLSKADGPQNDAEIAEMRGIPYREVVGALMWVANMTRPDLAYTAHTLAKFGDNPGPEHWKAVMKALQYLK 675
P G ++ N + +L +A+YGL A W + + GF AD CV+ K V + +YVDD+++ ++T ++ + L+S+F +K+LGE + LG I DR T+M Q RY V RF + K V P TG LSK P DAE +MRG PY+ ++G+L+++ TRPD+AY L++F +NPG +HWKA ++ L+YLK
Sbjct: 41 PYGITNAANMMCKLDKAIYGLKQAASAWHQTIHAVFVKIGFRSCGADKCVYV-KVSKDNYVYVCLYVDDMIIAAKTSEEINEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMK-LSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLK 256
BLAST of mRNA_A-nodosum_M_contig10530.1.1 vs. uniprot
Match: A0A4S4LBP1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4LBP1_9AGAM) HSP 1 Score: 151 bits (382), Expect = 8.690e-41 Identity = 83/220 (37.73%), Postives = 125/220 (56.82%), Query Frame = 1
Query: 28 PDGYRD--SPNQVGRLQEAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRPKHLGKVVVIIVVYVDDLLVLSETKQDEHHALEDLRSSFPIKDLGEISYYLGCHITRDRKARTVMFDQQRYAQTVAERFEIRKTSVI--PVSTGKAPLSKADGPQNDAEIAEMRGIPYREVVGALMWVANMTRPDLAYTAHTLAKFGDNPGPEHWKAVMKALQYLK 675
P+G+ + V +L +A+YGL AG W KK L GF + D ++ + V +II VYVDD+ + +++K + E+L F + DLG S+ LG + RDR R + Q++Y + ERFE+ + + P+ G LSKA P++ EIA M+ +PYR++VGALM++A TRPD++Y LA+F NPGP HWKA +YL+
Sbjct: 71 PEGFEEYYGAGFVLKLVKAIYGLKQAGCQWHKKLDSVLKGMGFTLVRCDNSIWVYRR-EDVRIIIPVYVDDMTIAAKSKDQDLFVKEELEKHFKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHR-LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSHWKAAKHLCRYLQ 288
BLAST of mRNA_A-nodosum_M_contig10530.1.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE) HSP 1 Score: 152 bits (384), Expect = 9.120e-41 Identity = 84/216 (38.89%), Postives = 121/216 (56.02%), Query Frame = 1
Query: 28 PDGYRDSPNQVGRLQEAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRPKHLGKVVVIIVVYVDDLLVLSETKQDEHHALEDLRSSFPIKDLGEISYYLGCHITRDRKARTVMFDQQRYAQTVAERFEIRKTSVIPVSTGKAPLSKADGPQNDAEIAEMRGIPYREVVGALMWVANMTRPDLAYTAHTLAKFGDNPGPEHWKAVMKALQYLK 675
P G ++ RL +++YGL A K+ +L+ GFE+S +DPCV R +V+ I ++VDD+L TK+ +E L S P K+LGE+ ++LGC I+RDR+A T+ Q+ Y + V ERF I +TS IP S P + + D E + +P+REVVG LMW+AN TRP+ + T+A+ P WKA K L YLK
Sbjct: 4 PPGCDSMSGKIVRLNKSLYGLKQASRTSYKRLVSDLLWIGFEQSLSDPCVLRFMMGDEVMGIFAIHVDDILYAG-TKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPAS----PANDSRSVMEDEEAGD---VPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLK 211
BLAST of mRNA_A-nodosum_M_contig10530.1.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 156 bits (394), Expect = 4.370e-40 Identity = 84/217 (38.71%), Postives = 123/217 (56.68%), Query Frame = 1
Query: 28 PDGYRDSPNQVGRLQEAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRPKHLGKVVVIIVVYVDDLLVLSETKQDEHHALEDLRSSFPIKDLGEISYYLGCHITRDRKARTVMFDQQRYAQTVAERFEIRKTSVIPVSTGKAPLSKAD-GPQNDAEIAEMRGIPYREVVGALMWVANMTRPDLAYTAHTLAKFGDNPGPEHWKAVMKALQYLK 675
P G D +Q+ + + A+YGL +G W L+ GFE+ +ADPCVFR VV+IIV+YVDD+LV + +D L L FP K+LGE ++ GC I RD +A T+ Q Y ++ ERF+++ TS IP + G AD GP+ + E E P R+ +G++MWV+ +RPD+++ A +A+ P HW A+ K L YLK
Sbjct: 977 PAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG------ADLGPKREDE--EGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLK 1184
BLAST of mRNA_A-nodosum_M_contig10530.1.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 155 bits (393), Expect = 5.940e-40 Identity = 83/217 (38.25%), Postives = 122/217 (56.22%), Query Frame = 1
Query: 28 PDGYRDSPNQVGRLQEAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRPKHLGKVVVIIVVYVDDLLVLSETKQDEHHALEDLRSSFPIKDLGEISYYLGCHITRDRKARTVMFDQQRYAQTVAERFEIRKTSVIPVSTGKAPLSKAD-GPQNDAEIAEMRGIPYREVVGALMWVANMTRPDLAYTAHTLAKFGDNPGPEHWKAVMKALQYLK 675
P G D +++ + + A+YGL +G W L+ GFE+ +ADPCVFR VV+IIV+YVDD+LV + +D L L FP K+LGE ++ GC I RD +A T+ Q Y ++ ERF+++ TS IP + G AD GP+ + E E P RE +G++MWV+ +RPD+++ +A+ P HW A+ K L YLK
Sbjct: 868 PAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG------ADLGPKREDE--EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 1075
BLAST of mRNA_A-nodosum_M_contig10530.1.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 155 bits (393), Expect = 6.140e-40 Identity = 83/217 (38.25%), Postives = 122/217 (56.22%), Query Frame = 1
Query: 28 PDGYRDSPNQVGRLQEAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRPKHLGKVVVIIVVYVDDLLVLSETKQDEHHALEDLRSSFPIKDLGEISYYLGCHITRDRKARTVMFDQQRYAQTVAERFEIRKTSVIPVSTGKAPLSKAD-GPQNDAEIAEMRGIPYREVVGALMWVANMTRPDLAYTAHTLAKFGDNPGPEHWKAVMKALQYLK 675
P G D +++ + + A+YGL +G W L+ GFE+ +ADPCVFR VV+IIV+YVDD+LV + +D L L FP K+LGE ++ GC I RD +A T+ Q Y ++ ERF+++ TS IP + G AD GP+ + E E P RE +G++MWV+ +RPD+++ +A+ P HW A+ K L YLK
Sbjct: 1247 PAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG------ADLGPKREDE--EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 1454
BLAST of mRNA_A-nodosum_M_contig10530.1.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 155 bits (393), Expect = 6.170e-40 Identity = 83/217 (38.25%), Postives = 122/217 (56.22%), Query Frame = 1
Query: 28 PDGYRDSPNQVGRLQEAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRPKHLGKVVVIIVVYVDDLLVLSETKQDEHHALEDLRSSFPIKDLGEISYYLGCHITRDRKARTVMFDQQRYAQTVAERFEIRKTSVIPVSTGKAPLSKAD-GPQNDAEIAEMRGIPYREVVGALMWVANMTRPDLAYTAHTLAKFGDNPGPEHWKAVMKALQYLK 675
P G D +++ + + A+YGL +G W L+ GFE+ +ADPCVFR VV+IIV+YVDD+LV + +D L L FP K+LGE ++ GC I RD +A T+ Q Y ++ ERF+++ TS IP + G AD GP+ + E E P RE +G++MWV+ +RPD+++ +A+ P HW A+ K L YLK
Sbjct: 1267 PAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG------ADLGPKREDE--EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 1474
BLAST of mRNA_A-nodosum_M_contig10530.1.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 155 bits (393), Expect = 6.200e-40 Identity = 83/217 (38.25%), Postives = 122/217 (56.22%), Query Frame = 1
Query: 28 PDGYRDSPNQVGRLQEAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRPKHLGKVVVIIVVYVDDLLVLSETKQDEHHALEDLRSSFPIKDLGEISYYLGCHITRDRKARTVMFDQQRYAQTVAERFEIRKTSVIPVSTGKAPLSKAD-GPQNDAEIAEMRGIPYREVVGALMWVANMTRPDLAYTAHTLAKFGDNPGPEHWKAVMKALQYLK 675
P G D +++ + + A+YGL +G W L+ GFE+ +ADPCVFR VV+IIV+YVDD+LV + +D L L FP K+LGE ++ GC I RD +A T+ Q Y ++ ERF+++ TS IP + G AD GP+ + E E P RE +G++MWV+ +RPD+++ +A+ P HW A+ K L YLK
Sbjct: 1410 PAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG------ADLGPKREDE--EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 1617
BLAST of mRNA_A-nodosum_M_contig10530.1.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM) HSP 1 Score: 150 bits (378), Expect = 1.050e-39 Identity = 87/218 (39.91%), Postives = 122/218 (55.96%), Query Frame = 1
Query: 28 PDGYRDSPNQVGR--LQEAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRPKHLGKVVVIIVVYVDDLLVLSETKQDEHHALEDLRSSFPIKDLGEISYYLGCHITRDRKARTVMFDQQRYAQTVAERFEIRKTSVIPVSTGKAPLSKADGPQNDAEIAEMRGIPYREVVGALMWVANMTRPDLAYTAHTLAKFGDNPGPEHWKAVMKALQYLK 675
PDG+ D N + L +A+YG A W+ K L +GF RS ADPCV+ + K +IIV YVDDL++ S TK + + L+ F IK+LGE+ Y LG I R+R +T++ +Q+ Y Q +AE+F + K + T SK P D E+ R PYRE+VGALM++A TRPD+A +AKF + HW A + L+YLK
Sbjct: 26 PDGFEDQVNPTKKCLLMQALYGTKQAARQWNSKLNKHLEGQGFHRSAADPCVYVRRSDSKFSIIIV-YVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAV--HTPADSNSKLVKPAED-EVFVPR-YPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLK 238 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10530.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10530.1.1 >prot_A-nodosum_M_contig10530.1.1 ID=prot_A-nodosum_M_contig10530.1.1|Name=mRNA_A-nodosum_M_contig10530.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=225bp MLRRSSTLSPDGYRDSPNQVGRLQEAMYGLMHAGLLWSKKFGGELIAKGFback to top mRNA from alignment at A-nodosum_M_contig10530:4198..4872+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10530.1.1 ID=mRNA_A-nodosum_M_contig10530.1.1|Name=mRNA_A-nodosum_M_contig10530.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at A-nodosum_M_contig10530:4198..4872+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10530:4198..4872+ >mRNA_A-nodosum_M_contig10530.1.1 ID=mRNA_A-nodosum_M_contig10530.1.1|Name=mRNA_A-nodosum_M_contig10530.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=675bp|location=Sequence derived from alignment at A-nodosum_M_contig10530:4198..4872+ (Ascophyllum nodosum dioecious)back to top |