mRNA_A-nodosum_M_contig1053.35.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1053.35.1
Unique NamemRNA_A-nodosum_M_contig1053.35.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1053.35.1 vs. uniprot
Match: A0A6H5KSU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSU0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.380e-15
Identity = 55/142 (38.73%), Postives = 81/142 (57.04%), Query Frame = 2 
Query:  401 VEGGHLRVKFNTKAT-RECYPFSNKTSVCLFAFCHTFELSRTAVKAMIDVLRAKDENGCFIFNPEDLLE-SAESFMARQRQYLDLLILIERKERVKEGCGKGRQQQATVYDIPINLILDHKLRSLSARQEMASNPGGRTVSA 820
            VEGG   +++N  A   + YP  N + + L  F    +LSR  ++ ++ +LR KDE+G   FN E L     E F AR R+Y  LL+ ++RK +         + +A V++IP NLI+D KLRS SA QEM  N GG+ ++A
Sbjct:   28 VEGGAANLRYNKDAKGSKYYPHRNLSVMLLNLFADKHQLSRAVIEGLLTMLRFKDEDGDK-FNIEGLSGVHHEHFRARSRRYAPLLLQLKRKVKCSAIAQAAGETEAYVHEIPANLIIDRKLRSKSAVQEMMVNQGGKALTA 168
[Close]
BLAST of mRNA_A-nodosum_M_contig1053.35.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.750e-10
Identity = 50/167 (29.94%), Postives = 79/167 (47.31%), Query Frame = 2 
Query:  317 DSGGDISGAPDTVPWLKDLRRQFVIGEAVEGGHLRVKFNTKATRE-CYPFSNKTSVCLFAFCHTFELSRTAVKAMIDVLRAKDENGCFIFNPEDLLESAESFMARQRQYLDLLILIERKERVKEGCGKGRQQQATVYDIPINLILDHKLRSLSARQEMASNPGGRTV 814
            + GG  S  P  +  L  +   F   +  EGG  +++ NTKA     YPF+ K    LF + H   +S+ A++ ++++L    E   F  N    ++  E F  R R YL +L L+ER        G       +VYDIP+NL+LD  ++  S      + PGG+ +
Sbjct:  229 EDGGGASSVP-RLDVLHTMAPSFASCKTAEGGPEKLRHNTKARGSPFYPFATKEQQLLFVWIHVHRISKRALRGLLEILLLLHEGQPFDVNGLAGVDP-EHFYGRMRPYLPMLQLLERDVPSTHDGGTS-----SVYDIPVNLLLDRVMQIQSETALSEAYPGGKIL 388
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1053.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSU0_9PHAE3.380e-1538.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE5.750e-1029.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1053contigA-nodosum_M_contig1053:258457..259279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size824
Hectar predicted targeting categoryother localisation
Exons1
Cds size663
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866435.5533032-CDS-A-nodosum_M_contig1053:258456..2591191680866435.5533032-CDS-A-nodosum_M_contig1053:258456..259119Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1053 258457..259119 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866435.562884-UTR-A-nodosum_M_contig1053:259119..2592791680866435.562884-UTR-A-nodosum_M_contig1053:259119..259279Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1053 259120..259279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1053.35.1prot_A-nodosum_M_contig1053.35.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1053 258457..259119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1053.35.1

>prot_A-nodosum_M_contig1053.35.1 ID=prot_A-nodosum_M_contig1053.35.1|Name=mRNA_A-nodosum_M_contig1053.35.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=221bp
METVTTPTICTPATVVTVTSHNRRRVVSSGNGEDDHLGFCNDSDSQVSGS
ENDSGGDISGAPDTVPWLKDLRRQFVIGEAVEGGHLRVKFNTKATRECYP
FSNKTSVCLFAFCHTFELSRTAVKAMIDVLRAKDENGCFIFNPEDLLESA
ESFMARQRQYLDLLILIERKERVKEGCGKGRQQQATVYDIPINLILDHKL
RSLSARQEMASNPGGRTVSAA
back to top

mRNA from alignment at A-nodosum_M_contig1053:258457..259279-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1053.35.1 ID=mRNA_A-nodosum_M_contig1053.35.1|Name=mRNA_A-nodosum_M_contig1053.35.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=823bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:258457..259279- (Ascophyllum nodosum dioecious)
GAACGCGACGGGGACGTCCGTGAACTCCGCGTTTTAGACACGGAGTTTTG
CAACAACAACGACTAAGAAATCGTCACGACGGGCGGCGACGGCATAGACT
ATCAGCAACGTGAAGATAAAGATTTCAATACATTTGACATGGAAGGCGGA
GAAGGAGAGGATGGAGACGGTGACGACGCCGACGATTTGTACTCCTGCGA
CAGTAGTGACAGTGACAAGTCACAACCGGAGGAGGGTGGTTTCATCTGGA
AACGGGGAAGACGATCATCTGGGTTTCTGCAACGATTCTGACTCTCAAGT
TTCGGGCAGCGAAAATGACAGCGGCGGCGACATCTCGGGAGCGCCCGATA
CGGTACCATGGCTGAAAGACCTGCGTCGTCAGTTCGTCATTGGGGAGGCA
GTCGAGGGAGGGCATCTTCGAGTAAAGTTCAACACGAAGGCTACGCGGGA
GTGTTATCCGTTCAGCAACAAAACAAGCGTGTGCCTCTTCGCATTTTGCC
ATACGTTTGAACTATCTCGCACGGCTGTCAAGGCAATGATTGATGTGCTA
CGGGCCAAGGACGAGAACGGGTGCTTCATCTTCAACCCGGAAGACCTGCT
CGAGAGCGCGGAAAGCTTCATGGCGCGCCAACGCCAATATTTAGATTTGC
TAATACTCATCGAGCGTAAGGAGAGAGTGAAAGAGGGATGTGGCAAAGGA
CGGCAGCAACAAGCTACGGTCTATGACATACCGATTAACCTTATCCTAGA
CCACAAGCTACGATCACTATCGGCAAGGCAGGAAATGGCCAGCAACCCGG
GCGGTCGCACGGTATCGGCGGCG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1053:258457..259279-

>mRNA_A-nodosum_M_contig1053.35.1 ID=mRNA_A-nodosum_M_contig1053.35.1|Name=mRNA_A-nodosum_M_contig1053.35.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=663bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:258457..259279- (Ascophyllum nodosum dioecious)
ATGGAGACGGTGACGACGCCGACGATTTGTACTCCTGCGACAGTAGTGAC
AGTGACAAGTCACAACCGGAGGAGGGTGGTTTCATCTGGAAACGGGGAAG
ACGATCATCTGGGTTTCTGCAACGATTCTGACTCTCAAGTTTCGGGCAGC
GAAAATGACAGCGGCGGCGACATCTCGGGAGCGCCCGATACGGTACCATG
GCTGAAAGACCTGCGTCGTCAGTTCGTCATTGGGGAGGCAGTCGAGGGAG
GGCATCTTCGAGTAAAGTTCAACACGAAGGCTACGCGGGAGTGTTATCCG
TTCAGCAACAAAACAAGCGTGTGCCTCTTCGCATTTTGCCATACGTTTGA
ACTATCTCGCACGGCTGTCAAGGCAATGATTGATGTGCTACGGGCCAAGG
ACGAGAACGGGTGCTTCATCTTCAACCCGGAAGACCTGCTCGAGAGCGCG
GAAAGCTTCATGGCGCGCCAACGCCAATATTTAGATTTGCTAATACTCAT
CGAGCGTAAGGAGAGAGTGAAAGAGGGATGTGGCAAAGGACGGCAGCAAC
AAGCTACGGTCTATGACATACCGATTAACCTTATCCTAGACCACAAGCTA
CGATCACTATCGGCAAGGCAGGAAATGGCCAGCAACCCGGGCGGTCGCAC
GGTATCGGCGGCG
back to top