mRNA_A-nodosum_M_contig1053.2.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1053.2.2 vs. uniprot
Match: A0A6H5JJ50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ50_9PHAE) HSP 1 Score: 167 bits (423), Expect = 2.250e-44 Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 3
Query: 492 IDRFPVCFRSSLDGRVFRHIVLAVRSGVTWGALGLSRRATLMYKELRYPSFSKLIADFRESYAGSWHHLEQVWVGFPLPHDISSNIPVKWKVM 770
+DRFPVCFRSSLDGRV+RHIVLAVRSG WG+LGLSRR TLMYKEL+Y FSKL+ DFRESYA +WH LEQVWVGFPLPHDISSN+ VKWKV+
Sbjct: 87 VDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASNWHRLEQVWVGFPLPHDISSNVAVKWKVL 179
BLAST of mRNA_A-nodosum_M_contig1053.2.2 vs. uniprot
Match: D8LKH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH4_ECTSI) HSP 1 Score: 166 bits (421), Expect = 2.430e-44 Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 3
Query: 489 QIDRFPVCFRSSLDGRVFRHIVLAVRSGVTWGALGLSRRATLMYKELRYPSFSKLIADFRESYAGSWHHLEQVWVGFPLPHDISSNIPVKWKVM 770
++DRFPVCFRSSLDGRV+RHIVLAVRSG WG+LGLSRR LMYKEL+Y FSKL+ DFRESYA SWH LEQVWVGFPLPHDISSN+ +KWKV+
Sbjct: 68 EVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDKLMYKELKYDLFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVL 161
BLAST of mRNA_A-nodosum_M_contig1053.2.2 vs. uniprot
Match: A0A1W0A7K4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7K4_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.810e-25 Identity = 58/134 (43.28%), Postives = 83/134 (61.94%), Query Frame = 3
Query: 486 KQIDRFPVCFRSSLDGRVFRHIVLAVRSGVTWGALGLSRRATLMYKELRYPSFSKLIADFRESYAGSWHHLEQVWVGFPLPHDISSNIPVKWKVMRASVGTDEEWTSAANDLDRFVLCAPAMFEHFASTGKLPD 887
+Q+DR P+ F+S G VFRHIVL ++ WGALGLSR A LM KEL+Y +FS+L+AD+ E +A H + +++VGFP HDI S+ V+W+V+ + +D W + A D F + H G+LPD
Sbjct: 114 QQVDRVPISFKSRSGGTVFRHIVLGIKHQHMWGALGLSRNADLMNKELKYKNFSELLADYIEHFAKCCHEVTKIYVGFPFSHDIHSSEKVQWRVLNIKI-SDHPWDAVAAQFDLFTREHSELMSHLHRVGELPD 246
BLAST of mRNA_A-nodosum_M_contig1053.2.2 vs. uniprot
Match: A0A835YRP7_9STRA (Vasohibin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP7_9STRA) HSP 1 Score: 111 bits (277), Expect = 3.050e-24 Identity = 47/94 (50.00%), Postives = 67/94 (71.28%), Query Frame = 3
Query: 486 KQIDRFPVCFRSSLDGRVFRHIVLAVRSGVTWGALGLSRRATLMYKELRYPSFSKLIADFRESYAGSWHHLEQVWVGFPLPHDISSNIPVKWKV 767
+ ++R+P+ F+S+L+G RHIVLAV SG WGALG+SRR L YKEL+Y S L+A+F +Y WH L+ +++G PLP + S N P++WKV
Sbjct: 97 RDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKV 190
BLAST of mRNA_A-nodosum_M_contig1053.2.2 vs. uniprot
Match: A0A1V9ZEI7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEI7_9STRA) HSP 1 Score: 116 bits (290), Expect = 6.600e-24 Identity = 57/134 (42.54%), Postives = 80/134 (59.70%), Query Frame = 3
Query: 486 KQIDRFPVCFRSSLDGRVFRHIVLAVRSGVTWGALGLSRRATLMYKELRYPSFSKLIADFRESYAGSWHHLEQVWVGFPLPHDISSNIPVKWKVMRASVGTDEEWTSAANDLDRFVLCAPAMFEHFASTGKLPD 887
+QIDR P+ F+S FRHIVL VR WGALGLSR LM K+L+Y SFS L+AD+ E++ H + +V+VGFP HDI S+ V+W+V+ + + W + A +D F + + H G+LPD
Sbjct: 116 QQIDRVPISFKSRSGDSTFRHIVLGVRHQHVWGALGLSRSPALMNKDLKYKSFSDLVADYIENFVKCQHQVTKVYVGFPFSHDIHSSEKVQWRVLNIKI-VEHPWEAVAAQIDLFTRESSELMSHLHRVGELPD 248
BLAST of mRNA_A-nodosum_M_contig1053.2.2 vs. uniprot
Match: A0A485KK56_9STRA (Aste57867_8397 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK56_9STRA) HSP 1 Score: 114 bits (284), Expect = 3.400e-22 Identity = 53/135 (39.26%), Postives = 82/135 (60.74%), Query Frame = 3
Query: 486 KQIDRFPVCFRSSLDGRVFRHIVLAVRSGVTWGALGLSRRATLMYKELRYPSFSKLIADFRESYAGSWHHLEQVWVGFPLPHDISSNIPVKWKVMRASVGTDEEWTSAANDLDRFVLCAPAMFEHFASTGKLPDH 890
+ +DR P+ F++ G VFRHIVLA++ WGALGLSR A LM K+L++ S L+ ++ E+Y +H + +V++GFP HDI S V+W+V+ + WT+ A+ LD F P + H G+LP++
Sbjct: 113 QHVDRIPISFKTQSGGTVFRHIVLAIKHQHLWGALGLSRNAGLMTKDLKFKCLSDLVQNYMENYNKCYHQVVKVYIGFPFSHDIHSTEKVEWRVLNIKLSI-HPWTTVASQLDYFSREYPELMSHLHRVGELPEY 246
BLAST of mRNA_A-nodosum_M_contig1053.2.2 vs. uniprot
Match: A0A1Y1IHH0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHH0_KLENI) HSP 1 Score: 100 bits (250), Expect = 4.070e-19 Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 3
Query: 492 IDRFPVCFRSSLDGRVFRHIVLAVRSGVTWGALGLSRRATLMYKELRYPSFSKLIADFRESYAGSWHHLEQVWVGFPLPHDISSNIPVKWKVMRASVGTDEEWTSAANDLDRFVLCAPAMFE 857
IDR P+ F++++DG+ FRHIVL VR+G +GALG+SRR LM+K+L + S + ++ DF++SY WH + ++ VG P+ HD S + W+ + V + W LD CA +++
Sbjct: 102 IDRIPLGFKTAVDGQEFRHIVLVVRNGGRYGALGISRRKELMFKDLVFNSLAAIVTDFKQSYERWWHTVLKIRVGLPVEHDAHSQNQICWRYLLLKVSS-RPWEECCTALDLHASCASKLWD 222
BLAST of mRNA_A-nodosum_M_contig1053.2.2 vs. uniprot
Match: A0A6H5JBL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL0_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 9.220e-18 Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 3
Query: 495 DRFPVCFRSSLDGRVFRHIVLAVRSGVTWGALGLSRRATLMYKELRYPSFSKLIADFRESYAGSWHHLE 701
DRF VCFRSSLDGRV+RHIVLAVRSG WG+LGLSRR TL+YKEL+ ESYA SWH LE
Sbjct: 125 DRFSVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLLYKELK------------ESYASSWHRLE 181
BLAST of mRNA_A-nodosum_M_contig1053.2.2 vs. uniprot
Match: A0A250XAD1_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAD1_9CHLO) HSP 1 Score: 93.2 bits (230), Expect = 1.590e-16 Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 3
Query: 498 RFPVCFRSSLDGRVFRHIVLAVRSGVT--WGALGLSRRATLMYKELRYPSFSKLIADFRESYAGSWHHLEQVWVGFPLPHDISSNIPVKWKVMRASVGTDEEWTSAANDLDRFVLCAPAMFEHFASTGKLPDHP 893
R P+ +S ++G +RHIVL + + WGALG+SRR LM+K+L + S S+L+ADF+ Y WH L + +G P HD+ SN V W+ S W A LD+F + F G P P
Sbjct: 128 RMPLGLKSGVNGETYRHIVLVIHHAPSQKWGALGISRREELMFKDLAFDSLSELVADFKAGYEKWWHKLHKARIGLPFEHDVFSNSSVCWRYCSVSPAK-RNWAVCAGILDKFGEDYKLLASRFKVLGFAPPAP 260
BLAST of mRNA_A-nodosum_M_contig1053.2.2 vs. uniprot
Match: A0A0L0HDB8_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HDB8_SPIPD) HSP 1 Score: 90.5 bits (223), Expect = 2.810e-16 Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 3
Query: 492 IDRFPVCFRSSLDGRVFRHIVLAVRSGVTWGALGLSRRATLMYKELRYPSFSKLIADFRESYAGSWHHLEQVWVGFPLPHDISSNIPVKWKVMRASVGTDEEWT---SAANDLDRFV 833
IDR F+S + V+RHIVL +R G WGALGLSRR LM K L + S +++ ++R +Y + H L + +G P+PHD SSN + WK + T + A + +DRF+
Sbjct: 154 IDRITCSFKSQVGSEVYRHIVLLIRHGDRWGALGLSRRRDLMDKPLTFQSLPEILMEYRTAYERNQHCLIKAKLGLPVPHDTSSNERIAWKYLSLRFPTSSYHSFTPQATHSMDRFI 270 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1053.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1053.2.2 >prot_A-nodosum_M_contig1053.2.2 ID=prot_A-nodosum_M_contig1053.2.2|Name=mRNA_A-nodosum_M_contig1053.2.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=308bp MRCQSSALRRCISVPSSPPICPKQIDRFPVCFRSSLDGRVFRHIVLAVRSback to top mRNA from alignment at A-nodosum_M_contig1053:8008..11285- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1053.2.2 ID=mRNA_A-nodosum_M_contig1053.2.2|Name=mRNA_A-nodosum_M_contig1053.2.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3278bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:8008..11285- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1053:8008..11285- >mRNA_A-nodosum_M_contig1053.2.2 ID=mRNA_A-nodosum_M_contig1053.2.2|Name=mRNA_A-nodosum_M_contig1053.2.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:8008..11285- (Ascophyllum nodosum dioecious)back to top |