mRNA_A-nodosum_M_contig1052.28.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1052.28.1
Unique NamemRNA_A-nodosum_M_contig1052.28.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1052.28.1 vs. uniprot
Match: A0A6H5L347_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L347_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 3.400e-82
Identity = 182/424 (42.92%), Postives = 260/424 (61.32%), Query Frame = 3 
Query:  771 FETSQDDISDQAKDQ--ASRRRKMDEIIEKVRASYREHLASTERIDQHLKHLREQLGELTREAKA------ATEAGIPILDKVVGASEHDRSSDSDRECEDTL-REQEEAVYVAEAHKADLAAQVVALRHDLKVEQEEVSVLEQEQTAAAAAATSEDAIR-----------KADTSRDLENMVGVADMTDAQVDAAVHEERTSVRKNGDICGWYKAIVSNLQLVTGIQVSHRLLFGGADATFGGGVQGLELMVDLGSGQILQVTVSATDGKIRSAELCPSVDDEKSE--RRITASELAELKTAANALPSPGNLRMLVREALCRAKYAAIRSEHVRIMRRRYLVGYREAAREVTITMPVGIVVSLRLHPDYPKIAGGVEVITIAGVGGWSSSDTELLCRKVNSLALPTIMETMSGLEEAVAALDG 1976
             E   +D  DQA D    + RR++DEI ++  +  +   +S ER+++   HL+E++  LT + +A      +  A + I+DKV    +     ++D   E+TL RE  +A+   EA +  LA +  A+R +L ++Q EV +LE+EQ A A AA    A             +A+ SR++EN+VGVA M +A+++A   EE   VR+N  I  WY A V+ ++ + G+++SHRLLFG   A  GG V+G+E MV LGSG  ++VTVSA DGK+ SA+LC       +     I+ SEL E++ AA+ALP+P NL  LV EAL RA  AA+R EHVR +RRRYL GYR  +REVT+TM  GIV    L  DYPK+ GG EV+ + GVGGWS+ +T+ LCR+VN +ALPT+M TM  LE  V A++G
Sbjct:   84 IEPGDEDFPDQAADDDLEAERRRVDEITDRALSEQQPLRSSAERVEEQAMHLQERIKGLTLQVEADPALRSSGGARLSIMDKVYAGDDRADEREADIRNEETLLREDSQALGAVEAKRTVLAERAAAVRAELLLQQREVDLLEREQHAVALAAAETAATGAGGAAAGSNGWRAEASREMENLVGVAGMPEARLEACEREEDALVRRNTGIRDWYAATVAEVENLGGVRLSHRLLFG---AGAGGRVEGMEFMVGLGSGLTMEVTVSAVDGKLSSAQLCHGQGGGGAAGFAGISPSELEEMRRAADALPAPQNLGKLVIEALSRATCAAVREEHVRQVRRRYLTGYRSPSREVTVTMGAGIVACFHLAADYPKVVGGAEVVALTGVGGWSAHETKQLCRRVNDMALPTLMATMDVLEAEVEAMEG 504
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1052.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L347_9PHAE3.400e-8242.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1052contigA-nodosum_M_contig1052:257036..260258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2737
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004100.1
Cds size1146
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866432.6608984-UTR-A-nodosum_M_contig1052:257035..2577931680866432.6608984-UTR-A-nodosum_M_contig1052:257035..257793Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1052 257036..257793 -
1680866432.7531283-UTR-A-nodosum_M_contig1052:259425..2602581680866432.7531283-UTR-A-nodosum_M_contig1052:259425..260258Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1052 259426..260258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866432.7284577-CDS-A-nodosum_M_contig1052:257793..2579521680866432.7284577-CDS-A-nodosum_M_contig1052:257793..257952Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 257794..257952 -
1680866432.7379832-CDS-A-nodosum_M_contig1052:258438..2594251680866432.7379832-CDS-A-nodosum_M_contig1052:258438..259425Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 258439..259425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1052.28.1prot_A-nodosum_M_contig1052.28.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1052 257794..259425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1052.28.1

>prot_A-nodosum_M_contig1052.28.1 ID=prot_A-nodosum_M_contig1052.28.1|Name=mRNA_A-nodosum_M_contig1052.28.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=382bp
MDEIIEKVRASYREHLASTERIDQHLKHLREQLGELTREAKAATEAGIPI
LDKVVGASEHDRSSDSDRECEDTLREQEEAVYVAEAHKADLAAQVVALRH
DLKVEQEEVSVLEQEQTAAAAAATSEDAIRKADTSRDLENMVGVADMTDA
QVDAAVHEERTSVRKNGDICGWYKAIVSNLQLVTGIQVSHRLLFGGADAT
FGGGVQGLELMVDLGSGQILQVTVSATDGKIRSAELCPSVDDEKSERRIT
ASELAELKTAANALPSPGNLRMLVREALCRAKYAAIRSEHVRIMRRRYLV
GYREAAREVTITMPVGIVVSLRLHPDYPKIAGGVEVITIAGVGGWSSSDT
ELLCRKVNSLALPTIMETMSGLEEAVAALDG*
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mRNA from alignment at A-nodosum_M_contig1052:257036..260258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1052.28.1 ID=mRNA_A-nodosum_M_contig1052.28.1|Name=mRNA_A-nodosum_M_contig1052.28.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3223bp|location=Sequence derived from alignment at A-nodosum_M_contig1052:257036..260258- (Ascophyllum nodosum dioecious)
ATTCTTCAAGCCCTGTTTCCAGGAGGCTATCTTGGAGAACCTTACGAGAG
ATGACCCTTTCGCCTCACCCAACTTCGACGGTGAGTTTTCTTTGGATTTC
AAGAGTCCCATTCCATTAATACTACTAATACTACCCCTGTACTTCAGAAA
TTGCCCACCCCAGCCGGCTGTCCCACACTACTAAACCCGTCTCAATAATT
TATATATTACTTCTGACAAGCTCGACGAGTTACTTTTGACAAGTTCGACG
AACGGACGCGTTCTAAAGAGCAAACGATGTGCTCTTGCAGACTCGCTGCG
GTGTACAGTATTGACCAAATTCTCAGGCGCGAACGGGGACAGGGAAATAT
TAATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGG
TTGATCCATAATCTGCTATAAGTGATGGCCATCGTGGAATTGACTTACAA
GTAAGTTCATTTTGTCCCAGTGAGATAGATATTCCTCGTAGGAAAATTAA
ACCTTGCTGCGCGCTTTCTTCCGTACTACCTTTACATACCGTCTTATTCA
TGCAGACATATACAACGGCGTTCGAAAGGCGCCCATTATGCTGCTAGTCT
ACTCTTTGTTCTCGTGAAAACTTGCCTACTTTATAGTATAGCTTCCCTTC
CATCGTCAAAACACCTGTAGGGCCAAATGGTTGCTTTTTTTTATCTTATG
AATTGTTTCGTACATCACGCCGTACTCGTAGGCGTTGTGACCTGTCCATT
CCCTGACTTCGGCCGCAACCTTTGAAACATCTCAAGATGACATATCCGAC
CAAGCGAAGGACCAAGCTTCCCGACGGCGAAAGATGGATGAAATAATCGA
GAAAGTTCGTGCCAGCTATCGCGAGCACCTGGCGTCCACGGAACGGATCG
ACCAGCACCTGAAGCACCTCCGCGAGCAGCTGGGGGAGCTCACACGAGAG
GCGAAGGCAGCGACCGAGGCAGGGATCCCAATCCTCGATAAGGTTGTGGG
CGCTAGCGAGCACGACAGATCTTCAGATTCTGACCGCGAGTGTGAGGATA
CTTTGAGGGAGCAGGAGGAAGCAGTTTACGTCGCCGAGGCGCATAAGGCC
GATCTCGCCGCTCAAGTAGTCGCTCTGCGCCACGATCTTAAAGTCGAGCA
AGAGGAAGTGTCCGTCTTAGAGCAAGAGCAGACCGCTGCGGCGGCGGCGG
CGACGTCAGAGGACGCGATAAGGAAGGCAGACACGTCGAGGGACTTGGAG
AACATGGTTGGAGTTGCCGACATGACCGACGCTCAGGTGGACGCGGCTGT
TCATGAAGAAAGAACCTCAGTTCGCAAGAATGGCGACATCTGTGGGTGGT
ACAAGGCTATCGTGTCCAACTTGCAGCTGGTCACCGGCATCCAGGTCTCT
CACAGGTTGCTCTTTGGAGGCGCGGACGCGACATTCGGCGGGGGAGTCCA
AGGTCTCGAACTTATGGTGGACCTAGGTTCGGGACAGATATTGCAGGTTA
CCGTTTCGGCCACTGACGGGAAGATACGCTCTGCAGAATTATGCCCCTCT
GTTGATGACGAGAAGTCTGAGAGACGCATAACAGCGTCGGAGCTAGCGGA
GCTTAAGACCGCCGCAAATGCGCTCCCTTCACCGGGAAACCTTCGGATGC
TCGTGCGCGAGGCCTTGTGTCGCGCCAAGTACGCCGCGATTCGCTCGGAG
CACGTGCGAATCATGCGGCGGCGGTATCTCGTCGGGTATCGCGAAGCGGC
TCGCGAAGTCACCATCACGATGCCTGTGGGTATCGTGGTTTCCCTGCGCT
TGCATCCGGACTATCCCAAGGCGGGTGCCGGTACAGCAGTTAGGACTCCT
GTAGATGTCGCCGGAGTTTGTTGTCGGTCGGAACGGTTTGTGCTCCCACC
GTGTAGGCCTCTCGTGAGCTTGAGTTTTCGCGGTCTTCCAAGCTGCTGCC
TTTTTCCCTCAGATCGGTTCGTTTTTTCTGCTTGCTGCCTCTCTGCGAAA
TCCTGAGATGCCGTTGAACATTTTTTTTTATGACTTTCGGGTACAGTGAG
TATAATGCAGCCGACCAACGCCTTGAACCACGTAGAAGAGAACATATATT
TTCTACTCCATCCCCTTCACGCCTCATCGTACGTGAAAACGAGAGACAAG
TCTTCGAGGCGTGACATGACCTAAGGGTACAGCACGCAAGTGAATCAATC
CCCTTGCGCCTACAGCTCGAGTGCGATACAGCACACCGCAGCGCCGGCTG
ACAGCTCCCCGTCCCTCGCCGAAACGCTTTCATTCGTTCTCGTGTTGCGT
TTCAAGATTGCTGGAGGAGTGGAGGTGATAACCATCGCCGGGGTTGGCGG
CTGGTCGTCCAGCGACACGGAGCTGCTTTGCCGAAAGGTCAACAGTCTTG
CGCTCCCAACAATTATGGAGACCATGAGCGGTCTCGAAGAGGCTGTGGCC
GCGCTCGACGGTTAGGGTGCTTGACCTGTACACAAGACTACAACAACGAA
TACAAGGGGTTTGCCAGGGGCATTAACCTATGGGCTTGCCTATGTTTACA
CGGGAAATACTTTATTCCTGTGCCTGTAGAAAAACTTCATAGAGAGGCAC
GGAAGAAAGCTCCACCACGAGGAAGCGCGTCGAAGAGCCCGGGATCGGGC
CGGCTATAGACGATACAGCCGGTGTCGAGCATCGTTTTATCCTAATGTCA
GCGCAACAGGGCCTCGTGTCTTTGGTGTCGTTCAACAAGAACGAAACGCG
TGTACGTACGAATGTATAGTCGGTTCGGAGGGTTGCTGGGTGTTGCCTAA
AGGAGATACTGTCGTGATACGGCTTAGGTAGGCATGTGGGACGTACCATT
CGATACTGGGAGAGTGTAGGCACAAGGGAGCTTCAAACTATTCACCCAGT
CAGTCAGTCAGTAAGTTCTCCATACGCTCGCGTCAAGTTGCTACTTGAGA
CGGACCAAGGCTGTTTTGCGACGTACTAGGTACTGTACTTCGAAGTCCCC
CGCACCAGGCCAGGGACATTCTCGACGCATTCCTTTCATTTTTGCCCGAA
TAAATATTACGTATGTATAAAAGTTAATCTATACATGTACTCCGGGTTCG
TTTTTTATTTTTAATCTGGTCTAGTCGATTTGAACTCTGGTCGATAGTCC
TTTGGCGCGAGGGTCAGCTATGGCTACTTGTCTCCTTTTGAACGATGTTC
CATGATTAGTAATTACTGCCACG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1052:257036..260258-

>mRNA_A-nodosum_M_contig1052.28.1 ID=mRNA_A-nodosum_M_contig1052.28.1|Name=mRNA_A-nodosum_M_contig1052.28.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at A-nodosum_M_contig1052:257036..260258- (Ascophyllum nodosum dioecious)
ATGGATGAAATAATCGAGAAAGTTCGTGCCAGCTATCGCGAGCACCTGGC
GTCCACGGAACGGATCGACCAGCACCTGAAGCACCTCCGCGAGCAGCTGG
GGGAGCTCACACGAGAGGCGAAGGCAGCGACCGAGGCAGGGATCCCAATC
CTCGATAAGGTTGTGGGCGCTAGCGAGCACGACAGATCTTCAGATTCTGA
CCGCGAGTGTGAGGATACTTTGAGGGAGCAGGAGGAAGCAGTTTACGTCG
CCGAGGCGCATAAGGCCGATCTCGCCGCTCAAGTAGTCGCTCTGCGCCAC
GATCTTAAAGTCGAGCAAGAGGAAGTGTCCGTCTTAGAGCAAGAGCAGAC
CGCTGCGGCGGCGGCGGCGACGTCAGAGGACGCGATAAGGAAGGCAGACA
CGTCGAGGGACTTGGAGAACATGGTTGGAGTTGCCGACATGACCGACGCT
CAGGTGGACGCGGCTGTTCATGAAGAAAGAACCTCAGTTCGCAAGAATGG
CGACATCTGTGGGTGGTACAAGGCTATCGTGTCCAACTTGCAGCTGGTCA
CCGGCATCCAGGTCTCTCACAGGTTGCTCTTTGGAGGCGCGGACGCGACA
TTCGGCGGGGGAGTCCAAGGTCTCGAACTTATGGTGGACCTAGGTTCGGG
ACAGATATTGCAGGTTACCGTTTCGGCCACTGACGGGAAGATACGCTCTG
CAGAATTATGCCCCTCTGTTGATGACGAGAAGTCTGAGAGACGCATAACA
GCGTCGGAGCTAGCGGAGCTTAAGACCGCCGCAAATGCGCTCCCTTCACC
GGGAAACCTTCGGATGCTCGTGCGCGAGGCCTTGTGTCGCGCCAAGTACG
CCGCGATTCGCTCGGAGCACGTGCGAATCATGCGGCGGCGGTATCTCGTC
GGGTATCGCGAAGCGGCTCGCGAAGTCACCATCACGATGCCTGTGGGTAT
CGTGGTTTCCCTGCGCTTGCATCCGGACTATCCCAAGATTGCTGGAGGAG
TGGAGGTGATAACCATCGCCGGGGTTGGCGGCTGGTCGTCCAGCGACACG
GAGCTGCTTTGCCGAAAGGTCAACAGTCTTGCGCTCCCAACAATTATGGA
GACCATGAGCGGTCTCGAAGAGGCTGTGGCCGCGCTCGACGGTTAG
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