mRNA_A-nodosum_M_contig10518.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10518.1.1
Unique NamemRNA_A-nodosum_M_contig10518.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10518.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10518contigA-nodosum_M_contig10518:1252..4291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1901
Hectar predicted targeting categoryother localisation
Exons4
Cds size336
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10518.1.1prot_A-nodosum_M_contig10518.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10518 2713..3930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866429.7862442-UTR-A-nodosum_M_contig10518:1251..27121680866429.7862442-UTR-A-nodosum_M_contig10518:1251..2712Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10518 1252..2712 -
1680866429.8231108-UTR-A-nodosum_M_contig10518:3930..39621680866429.8231108-UTR-A-nodosum_M_contig10518:3930..3962Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10518 3931..3962 -
1680866429.835586-UTR-A-nodosum_M_contig10518:4219..42911680866429.835586-UTR-A-nodosum_M_contig10518:4219..4291Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10518 4220..4291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866429.7952194-CDS-A-nodosum_M_contig10518:2712..27401680866429.7952194-CDS-A-nodosum_M_contig10518:2712..2740Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10518 2713..2740 -
1680866429.8035328-CDS-A-nodosum_M_contig10518:3308..35121680866429.8035328-CDS-A-nodosum_M_contig10518:3308..3512Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10518 3309..3512 -
1680866429.8130713-CDS-A-nodosum_M_contig10518:3826..39301680866429.8130713-CDS-A-nodosum_M_contig10518:3826..3930Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10518 3827..3930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10518.1.1

>prot_A-nodosum_M_contig10518.1.1 ID=prot_A-nodosum_M_contig10518.1.1|Name=mRNA_A-nodosum_M_contig10518.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=112bp
MGCVVLLQFNKCAYTAAAFLYPIAMIFDILSVLSWIICTKTIVDYIADDD
IDENDAKRFIRLFSAVPGFAAVCLLLGTVVTCAATRNWEKSGAADAVAVV
ERRLPTIQPIV*
back to top

mRNA from alignment at A-nodosum_M_contig10518:1252..4291-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10518.1.1 ID=mRNA_A-nodosum_M_contig10518.1.1|Name=mRNA_A-nodosum_M_contig10518.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3040bp|location=Sequence derived from alignment at A-nodosum_M_contig10518:1252..4291- (Ascophyllum nodosum dioecious)
AGACGCGGCGGATATCGGAAACAATAATCGTTATCCATGTCACCGCCCTC
ATCTTCGGCAATTTTTTCTGGGGTAAGAAGCAATGCATCCAGTCTTGGTC
TTTCCTGTTTATTGAACCAGTCCAATTCACCTGCGAGGAGAGAGATCGGT
TGATAAATCACGCTGCCCGGTTTCAAGCGAACCGCGCATTCTTTCTATTA
CTTCGTTCGACATTCATTATAAATAGCATCCCCGAAATGAATAGTCCGAG
GTAGAGGTGCTATTATGCCTCTCATGATCTGATGAATGCTCACCCCCCCC
TCCCTAACTCCGGTCGTTACCCCAAACAGGGCAATGGATCGCCTCCTTCA
TCGCTATTGTAATGGGCTGCGTTGTTTTGCTCCAGTTTAACAAATGCGCA
TATACAGCGGCTGCGTTTTTGTACCCGATCGCTATGATCTTTGACATCTT
ATCGGTCCTCTCCTGGTGAGTTGGTCGGACAGCAGCACCACAAGTCGTTT
TTCTGGGGCGAGTTGTCCGTGTTTTGGGTGCCTCTATAGCGAGCTATCCT
CCCGGAGATTGTCGGCATAGCAGCAAGATTTCCATCCACCGGAAAAAACT
TTGAAATTTTCACAGCCGCCTCTGATAGGTCAGCTCTGAGTCTTTTGAAC
AATCTGCCGAAGATCGCGTTTACATGCCAACGCCCACGACCATGTTTCTA
CAGCAACCCCCGTCCCCCCGCCCCCTGCCCTCTCTTTGCCTTATTAACAT
TTACCACGCATCCACTGCTCCTCATCCAGGATAATATGTACTAAAACTAT
CGTGGACTACATTGCCGACGATGACATCGACGAGAATGATGCGAAGAGAT
TCATTAGGCTGTTTTCTGCCGTTCCTGGCTTTGCGGCTGTGTGTCTCCTT
CTTGGAACCGTCGTCACCTGTGCGGCCACCCGCAACTGGGAAAAAAGCGG
TGCTGCCGATGCGGTGGCCGTTGTCGAGCGCAGGTTAGGTTATCAGTGAG
GCTTCCAAGGGGGTAGATTGCCAGGGGATGGGCGTGGATGAGGTGAAATT
GAGCGTTTCACAAGGTTTCTAAACCGTGCTTTGCAGTCAAAAGCGTGGTG
GTCAGCCCCTACTTATGATGTGTTCTCCTAAATATTCTACAGACATTATA
AGAGGGCCTGACGGACACTTCGAAGGTTGACATGGCGGGATGTTTTTTGT
TAACAGAACGTTGCCACCCCCAATCACGTAAGGAGAGGACAAGTGTATGT
GTATACATACTTACTACTGGTACAGTATATAGTATATGATTAGCTTTAGT
TCATGATTCAGAAACACCCAAGCTGCTTAGAGCCTATATATATACTGACT
TGTGTATTTTTTTTAATGTTTGAGTCATTATGTTGTGCCCTGTGTGCCCT
GTTCTTTAGTCTACACCCACTTACGGCCCCCAGTTGGCCGCTTTCATCAT
TCCTCTGGGAGTTGACGCACTTATCATATGACCCTCCTGTCATTCCGTGG
TCCTCGTGTACCATGAGCCCATAATTTCCTTTTATAATTGTCTCCCGCCA
GGTTGCCTACCATTCAGCCTATCGTCTAACCAGCGCGACACAGCAGGCGC
CCAGGAGCACTTCAAGAGTAGCAACGGGGTCAATCTGAAGAATTATCAGC
TCTCATGGCTTGAAAGCAGACACACATGGTCGTGAACTGAATATCAAAAT
GAAGTACTTGGTTGCTCGATGCTTTGGAACGACTCGCTCTACGTGAAGAG
CTTGCATGACACTATTATTGCGCTGTAAAGGCGACCCCGTGGGTTGCTCG
AACGATGCCACGCATGTCAGCTGGCCTTATGCACTTGTATTGTATGGTCT
ATAAAGAGTACTCTCAATGCTATCTGTATTTATTTGCATGAAAAGCCTTG
AGGTACGTAGAGTATAAACTATAAATAGTAGGAATAATGTGATGATGTTA
GGGCCTTCGGGCATAGACGTTAAGCCTTTTTGTTTTGTTGATGTCAAAGT
ATAACCACATTTTCTGTATCGTAGCCCGAAGTCTGAAGCACACATCATCA
GTGAGAATAATAGTGGTAGTGGTATACCTAGTAGTCATTTGCGGCATCTG
ACGACTGAGCAGTTAAAATTGTTGTGTGTTATTTTGCCTGAGAGCATCAA
TGCCTCCAAGTCGTCAGAGGAATATTACGGGAATGCTACGATCAGTGTCT
GAGAGGTGTCATTGGTATTCAATATTGTAGTACATAACAAATACGACTTG
AAGGGCCTTTGCTTCCGTGCACACTCGGTTTGGATAGTTTCAATTATCGT
GGCTACCAGGTACATTACAGTGCTGGAGTATGCCATCGTAATAGTATAAG
TATCCAAGTATAAAGTATGGGGCGGGGCCAATGCGACTGTAGCGCTGCCC
AATCGTATATCGTAGTATAAGTGAGGCGATTTGAAGTTGCACCTCTGTGT
AACTGGTTTATTCGGTCGGAGAGTTTCAACTACTGTGTTGACATCGTGCG
TTATATTTTGAAAATTCCGTTAGTTTGCGCCATGTTTGTTCGTCCATCGT
TCACGTATTATTTCACGTATTATGTACCTGATTTTGCCCGGCGCCATCTT
TGTCGCCGCAGGGCTGTTATTGTTATGGCACTGCTATCCGTTGTGATAGT
ATTGTATTGTTTTTAGACAAATTATATAAATCTGAGTAAGACATGGCACG
TCTCTAGTCTAATATTGTAGAAAGTATAAATAATGTAGAGCTACGCGACC
GGTATAAAGCAAACGCAAGAAGAGGTCTACGTTTGCGCAGAAGCACGACA
AAAATGCAGTTGAGCAGTCAGGGGGAGGAAGTGACGGAGACAGCCAGTGG
TACAAGAGAGAAGATATAAAAGAGAGCCAGTCAGAATCAAACATTCTGAT
GCGTTAAAGGGGGGCAGATGATAATGCCGCCCGTCTCGCTTCTGTAACAT
TAATATTACTGTCACAACATAACGCGTAAATTTGTGCGGCACTTCACCGC
CATAGCGGTCAGTTATTTATGTTATGAACACGAAATTTGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10518:1252..4291-

>mRNA_A-nodosum_M_contig10518.1.1 ID=mRNA_A-nodosum_M_contig10518.1.1|Name=mRNA_A-nodosum_M_contig10518.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at A-nodosum_M_contig10518:1252..4291- (Ascophyllum nodosum dioecious)
ATGGGCTGCGTTGTTTTGCTCCAGTTTAACAAATGCGCATATACAGCGGC
TGCGTTTTTGTACCCGATCGCTATGATCTTTGACATCTTATCGGTCCTCT
CCTGGATAATATGTACTAAAACTATCGTGGACTACATTGCCGACGATGAC
ATCGACGAGAATGATGCGAAGAGATTCATTAGGCTGTTTTCTGCCGTTCC
TGGCTTTGCGGCTGTGTGTCTCCTTCTTGGAACCGTCGTCACCTGTGCGG
CCACCCGCAACTGGGAAAAAAGCGGTGCTGCCGATGCGGTGGCCGTTGTC
GAGCGCAGGTTGCCTACCATTCAGCCTATCGTCTAA
back to top