mRNA_A-nodosum_M_contig1051.29.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1051.29.1
Unique NamemRNA_A-nodosum_M_contig1051.29.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1051.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1051contigA-nodosum_M_contig1051:209126..211862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size427
Hectar predicted targeting categoryother localisation
Exons3
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866429.0806618-CDS-A-nodosum_M_contig1051:209125..2092541680866429.0806618-CDS-A-nodosum_M_contig1051:209125..209254Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1051 209126..209254 +
1680866429.0900133-CDS-A-nodosum_M_contig1051:210130..2103011680866429.0900133-CDS-A-nodosum_M_contig1051:210130..210301Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1051 210131..210301 +
1680866429.0979426-CDS-A-nodosum_M_contig1051:211737..2118601680866429.0979426-CDS-A-nodosum_M_contig1051:211737..211860Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1051 211738..211860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1051.29.1prot_A-nodosum_M_contig1051.29.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1051 209126..211860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1051.29.1

>prot_A-nodosum_M_contig1051.29.1 ID=prot_A-nodosum_M_contig1051.29.1|Name=mRNA_A-nodosum_M_contig1051.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=141bp
IVCYDDDCCYTCNHCTEILCRDCVRDCNKCKEFFCDKFLIKCEFCDRIYC
LICFSKRTECEVCCMKPTNDRVLEVKSQMKKMTAGLKKAQRGAPASRSSA
EQHRGNRREGRETQTALVSKAEAEAKEKRIEEAKEKQRIEE
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mRNA from alignment at A-nodosum_M_contig1051:209126..211862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1051.29.1 ID=mRNA_A-nodosum_M_contig1051.29.1|Name=mRNA_A-nodosum_M_contig1051.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2737bp|location=Sequence derived from alignment at A-nodosum_M_contig1051:209126..211862+ (Ascophyllum nodosum dioecious)
ATTGTTTGTTATGATGATGATTGCTGCTACACGTGCAACCACTGTACCGA
GATTCTTTGCAGAGACTGCGTCCGGGACTGCAATAAATGCAAGGAATTCT
TCTGTGATAAATTTCTCATCAAGTGCGAGGTGAGTGTTTTGTGCCTCTAA
GAAAGGGGGCGACTTTGAAGGAGGTTACCTTTTTTGTTCCCTGTTGCAGA
TGCGTCTACTATGTACATGCCCCCTCCGTAGAGCCTACTTTTTTCAATGT
CTTCCGTTAGTTATGTAGTAGCAAAATTGCACTACGTACATGTGTGTGTG
TGTTGTGCGTATGTGTATTCATTTAAGGTGTGCGTGTGTGTGCGTACCAG
GGATGTTTTATGGAACTACACATGGTAGCGCAATCCGGTCGTTTGGTTCC
ACAATACTGTAGTGATGATATTCTAGTCGCATAAATTCTCTTGGAGTGAG
GGGGAGATGGGCGAACCAAGTGTTGTGTTGTGATGTGTCTTGTCATCACG
GTAGCGCAAATCCGCCAATCCACATTTGATTGTCACCGTTCTCCCGAGGC
CCGTCACTCCTCGTGGAGGGGGGCGCGAATAACTTGATGTACATATCGCC
CGCTACATCCCATCAAAATCCCCTGTCTGGACCACTATGTACTCGAGGTT
CCAAACCAGGCGTATGTATGTATGTATGTATGTACATGTACACTTTTTTA
GGCTGCTTTCATTGCGCACGCGTAGCATGTACAAGGTCTGCTTTGATCTT
TCATCGATGATGCGGGATCTCTTGAAATATGCTATTGATACATATAACCT
TTCGTGAATTTGGTTTGAAAGCATGCGTGATCCTTAAAACATATGTAGAC
AACGTACCTGTATGACTCAACACATCTACTGTAGTAATAGTTCGAGTGCG
TTGAGGAAAAATATCTAGTATTATGAATAAAACTAAGCTCTTGCCTTTCG
TGATCCGACCTCAAATATCGCGTGTCTCTTTCGCCTTTTCCGGCGTCTTT
TGCAGTTCTGTGACAGAATATATTGCCTCATTTGCTTCTCAAAAAGGACC
GAGTGCGAGGTCTGTTGTATGAAGCCCACCAACGATCGTGTCCTGGAAGT
CAAATCTCAGATGAAGAAGATGACGGCGGGCTTGAAGAAAGCCCAGAGGG
GAGCCCCGGCCTCCCGTTCCAGCGCGGTGTGTGCCGTGTGTGACATCCTC
TCTATAACAGTAACCAATTACCAATTTCGATCCCGACCATATTCACTCTG
TGATACTGCACACCATTCGATTGCCATTCCTGAGTCTTGGAGTCAGCTGG
ACAGGAGAGAGAGGAATGGGAAGAAGAAGAAAATATTGCAGCAAGATTTT
GTTACCAACAAAACTTTATACCTGGTAGTAAATTATAACTAACCGTCAAT
CGGACCAATCAGGGCAGAGTAACTGAGTCTCCCTCTTCTACGCCATATTT
TGCCCAATAATAATCATCTCGGGGGCAACGATGTGTTTGCAGATATATAA
AACGAGATGCGAAAAAAATTGCGCGGGGGCCACGTATGTTTTTGAAGGTT
AAAACTAGTTTTATTACTACCACCTCTATTTTTTTATAGTTGACCCTACG
GCAGAATTCAAGCTCACACGGGAAGAAAAAAAGAGAATCTACACTAAATT
GGCATATACAACGATATGTCTGCAGATATATAAAACGAGATGCAGAAAAA
TTGCGCGGAGGCCACTTCTGTCTTGAACTTGAAAAAATGTTTTATTACTA
CCACCTCTATTTTTTATAGTTTTATCACTATCAAGCTCACACGGGGAAGA
AAAAGAGGGAATCTACACTAAAGTGGCATATAGACCCGAAATAGTGGTGT
GCATGGGGCACCGCTCAGGTTAATTTTTGTGTGATGGACCACAAAATATC
GTAGGCGCATCATTCCCCTGTTTTCAAAGTTTCGAGCACCATGTGCGCCA
GATTCCCATACCGCGGGCCTCCAGTCTCCCATGGCCGTGGTCATCCCATC
CAGGTTTCAAATTACACGCAACCTAATAATATTAGTCCACGCCGCCCCCA
CCGCCCCGACGCACGCTGCTATGCCCTTTCCGAAACTTCCTTACAAATGA
TTGGTTAGGGCAACCCATAGTCGCCGAGCCTATACTGTATGGTATGGTCA
CACATATAGCAAGAGTATGGATCAAGCGGGTAAGGTTGCCAGTCCTGCAC
GTGGTCAGCTGAACAGGAAAAACGAATATTTCCCTGTGAGCATTCGTGCC
TGAGAATTTGATCTCGCGAGACGGGTTCGGCAGTCACGCAGACCAACTAT
TATCCGCAAAAAGTAGCCCATATCATACTTCCCAAGCCCTCACGTGCAGG
GCGTCAATGTACGAGAGAAAGAGGGAGATCCTTTGTATAGACCTGACCCC
CCGTCCTTGGGACCTCTATACCTTTTCTTTCCCCGTTCGCAAAATGACTG
TTATAGATTATTACGCTCTCCATTAATCGTTTCAACTACTTCGCAGCCAC
GGGGGTTTCCACGAGCGATGAAGCGGTCGTGTCGCTTTTGTCCCAGGGAG
CGAATAAAACCACGCGTGCACATATTGCTGAAATTTCTCACTCATACGTA
AATATGTCTCAGGAGCAGCACCGTGGTAATCGGCGTGAGGGGAGGGAGAC
GCAGACGGCGCTGGTATCAAAAGCTGAGGCGGAAGCGAAGGAAAAACGTA
TCGAAGAAGCCAAGGAAAAACAACGTATTGAAGAAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1051:209126..211862+

>mRNA_A-nodosum_M_contig1051.29.1 ID=mRNA_A-nodosum_M_contig1051.29.1|Name=mRNA_A-nodosum_M_contig1051.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=423bp|location=Sequence derived from alignment at A-nodosum_M_contig1051:209126..211862+ (Ascophyllum nodosum dioecious)
ATTGTTTGTTATGATGATGATTGCTGCTACACGTGCAACCACTGTACCGA
GATTCTTTGCAGAGACTGCGTCCGGGACTGCAATAAATGCAAGGAATTCT
TCTGTGATAAATTTCTCATCAAGTGCGAGTTCTGTGACAGAATATATTGC
CTCATTTGCTTCTCAAAAAGGACCGAGTGCGAGGTCTGTTGTATGAAGCC
CACCAACGATCGTGTCCTGGAAGTCAAATCTCAGATGAAGAAGATGACGG
CGGGCTTGAAGAAAGCCCAGAGGGGAGCCCCGGCCTCCCGTTCCAGCGCG
GAGCAGCACCGTGGTAATCGGCGTGAGGGGAGGGAGACGCAGACGGCGCT
GGTATCAAAAGCTGAGGCGGAAGCGAAGGAAAAACGTATCGAAGAAGCCA
AGGAAAAACAACGTATTGAAGAA
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