mRNA_A-nodosum_M_contig105.88.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig105.88.1
Unique NamemRNA_A-nodosum_M_contig105.88.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig105contigA-nodosum_M_contig105:872783..873794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1012
Hectar predicted targeting categoryother localisation
Exons1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866425.3800642-UTR-A-nodosum_M_contig105:872782..8730191680866425.3800642-UTR-A-nodosum_M_contig105:872782..873019Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 872783..873019 -
1680866425.3985343-UTR-A-nodosum_M_contig105:873532..8737941680866425.3985343-UTR-A-nodosum_M_contig105:873532..873794Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 873533..873794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866425.388345-CDS-A-nodosum_M_contig105:873019..8735321680866425.388345-CDS-A-nodosum_M_contig105:873019..873532Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 873020..873532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig105.88.1prot_A-nodosum_M_contig105.88.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig105 873020..873532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig105.88.1

>prot_A-nodosum_M_contig105.88.1 ID=prot_A-nodosum_M_contig105.88.1|Name=mRNA_A-nodosum_M_contig105.88.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=171bp
MPGYFAGLRLYKNCCAKRDQHHEPVQMAPHLFYKRGQTSDSSLRLVEQGS
SGPATPPAQAAAGVTAEEPWPRPPQGILRIRRKTGDVAFENLVVAAVEED
KPNPKRRPTVGSISDGLAELRLIDNSCEMGVFGVYRGTKRATGETSTRAP
LLNHLERQVDEAIFSASTWY*
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mRNA from alignment at A-nodosum_M_contig105:872783..873794-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig105.88.1 ID=mRNA_A-nodosum_M_contig105.88.1|Name=mRNA_A-nodosum_M_contig105.88.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1012bp|location=Sequence derived from alignment at A-nodosum_M_contig105:872783..873794- (Ascophyllum nodosum dioecious)
AGTCTTCATATAAGATCCCTTCATTCGCTGGGAGAAACCGATCAAAGGCA
AGGAATCCGTGTCGTGTATACCGTTCCAGCCTATATCGCGGAAGGCACTC
GCTGCGGCGACTGCAGCAGCAGCTGGTGTTACTGCACAAGAGCCCCGCCC
AAGACCACAGCAGGGGATCAAACGAAAGAGGGGAGATGCGGCCATTGAGA
GCTTCATTACCAACTCAGAGGGAAATGATCCATATCACAAGCGCCGCCCC
GCAGCCGGTTCCATGCCAGGCTATTTCGCTGGCCTTAGACTATACAAGAA
CTGCTGTGCGAAACGGGACCAACATCATGAGCCGGTTCAAATGGCCCCTC
ACTTGTTTTACAAGCGGGGCCAAACGAGCGACAGCAGCCTACGCCTTGTG
GAGCAAGGATCATCGGGCCCCGCCACTCCGCCAGCTCAAGCAGCAGCTGG
TGTTACTGCAGAAGAGCCTTGGCCACGACCACCCCAGGGGATTCTGAGGA
TCAGACGCAAGACGGGAGATGTGGCCTTTGAGAACCTCGTCGTTGCCGCC
GTGGAGGAAGATAAGCCGAATCCCAAGCGCCGTCCCACGGTCGGTTCTAT
CTCCGACGGTCTCGCCGAACTTCGACTCATCGATAACTCCTGCGAGATGG
GTGTATTCGGAGTGTACAGAGGAACTAAGCGAGCGACTGGCGAAACCTCA
ACGAGGGCCCCTTTGTTGAATCATCTGGAGCGCCAGGTGGATGAAGCGAT
TTTCTCGGCAAGTACGTGGTATTGACTTTGGTAAGAATTTAGTAGTTACT
GTTATGGAGTTATTCAACGCCCGTTAGATTCGTTCAGGCTTGTGTAAGCT
GCCATTCAGTGTTGGGAAATGCAGGTATCTGCGTTAACTTTCGTCCCTTG
AAGACACAAAGAACCAACAACGTCAGCCCATATTACACGCTCATCATCAT
CATCACCCTTATACTGTTTGCGTGAGAATATATCTTTCGATACATTGATA
AGACGCTCCAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig105:872783..873794-

>mRNA_A-nodosum_M_contig105.88.1 ID=mRNA_A-nodosum_M_contig105.88.1|Name=mRNA_A-nodosum_M_contig105.88.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=513bp|location=Sequence derived from alignment at A-nodosum_M_contig105:872783..873794- (Ascophyllum nodosum dioecious)
ATGCCAGGCTATTTCGCTGGCCTTAGACTATACAAGAACTGCTGTGCGAA
ACGGGACCAACATCATGAGCCGGTTCAAATGGCCCCTCACTTGTTTTACA
AGCGGGGCCAAACGAGCGACAGCAGCCTACGCCTTGTGGAGCAAGGATCA
TCGGGCCCCGCCACTCCGCCAGCTCAAGCAGCAGCTGGTGTTACTGCAGA
AGAGCCTTGGCCACGACCACCCCAGGGGATTCTGAGGATCAGACGCAAGA
CGGGAGATGTGGCCTTTGAGAACCTCGTCGTTGCCGCCGTGGAGGAAGAT
AAGCCGAATCCCAAGCGCCGTCCCACGGTCGGTTCTATCTCCGACGGTCT
CGCCGAACTTCGACTCATCGATAACTCCTGCGAGATGGGTGTATTCGGAG
TGTACAGAGGAACTAAGCGAGCGACTGGCGAAACCTCAACGAGGGCCCCT
TTGTTGAATCATCTGGAGCGCCAGGTGGATGAAGCGATTTTCTCGGCAAG
TACGTGGTATTGA
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