mRNA_A-nodosum_M_contig105.70.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig105.70.1 vs. uniprot
Match: D7FQD7_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQD7_ECTSI) HSP 1 Score: 372 bits (955), Expect = 4.050e-123 Identity = 184/225 (81.78%), Postives = 211/225 (93.78%), Query Frame = 3
Query: 393 TPSSVEEVTIIKNSLLQVAAMTERGQLANDEQRNDVELLVGRLEELKEED--QPYNDENMVGIWTLVYSSSQAFRSSPFFATFQALLGREGVAERIFTFTDEFPNAKIGQARQIVSEDCTELLSRVEMSLWPHRWISGVVETRSRIVNDDVGDRLEVIVDSTRVKESILGKISPRLEGWQVPVDQLSERIFDRIPRITLETVFLDQDLRISRLPDRNFLIYIKDY 1061
TP+ V+E+T+IKNSLLQVAAMTERGQLA + Q+ND++LL+ RLEELK E+ +PY DENMVG WTLVYSSSQAFRSSPFFATFQAL+G++GVAERIF+FTD FPNAKIGQARQIV+EDCTELLSRVEMS+WPHRWISGVVETRS+IVNDD+GD+LEVIVD TRV +SILGKISPRLE +VPVDQLSER+FDRIPRITL+TVFLDQDLR+SRLPDRNFL+Y+KDY
Sbjct: 59 TPADVDEITLIKNSLLQVAAMTERGQLATEAQQNDMDLLLERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKDGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDQLEVIVDDTRVSDSILGKISPRLEEVRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLVYVKDY 283
BLAST of mRNA_A-nodosum_M_contig105.70.1 vs. uniprot
Match: A0A835ZIJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIJ0_9STRA) HSP 1 Score: 171 bits (432), Expect = 2.110e-46 Identity = 90/197 (45.69%), Postives = 126/197 (63.96%), Query Frame = 3
Query: 486 QRNDVELLVGRLEELKEEDQPYNDENMVGIWTLVYSSSQAFRSSPFFATFQALLGREGVAERIFTFTDEFPNAKIGQARQIVSED-----CTELLSRVEMSLWPHRWISGVVETRSRIVNDDVGDRLEVIVDSTRVKESILGKISPRLEGWQ-VPVDQLSERIFDRIPRITLETVFLDQDLRISRLPDRNFLIYIKD 1058
QR+DVELLV RL+EL ++P+N ++M+G WTLVYSS + FR P FA QAL G R++ P A++G +Q ++ C L + + ++P ++ G +ET +RIVNDD+GD LEVIV+ + V ES L + P G VPV +LSER FDR+PR+ LET++LD D R++RLPD LIY+KD
Sbjct: 2 QRDDVELLVTRLQELVPAEEPFNGDDMLGSWTLVYSSGEVFRGDPVFAHIQALAGNPLWPNRVYRMAGAMPTARVGTVQQTIAAGGEEGRCKRCLV-IRLEVFPWNYLQGTIETEARIVNDDIGDGLEVIVERSAVTESPLTRFWPGKNGPPAVPVARLSERFFDRLPRLALETLYLDSDFRVTRLPDDTLLIYVKD 197
BLAST of mRNA_A-nodosum_M_contig105.70.1 vs. uniprot
Match: A0A7S0WSZ6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WSZ6_9CHLO) HSP 1 Score: 104 bits (259), Expect = 1.720e-21 Identity = 79/224 (35.27%), Postives = 121/224 (54.02%), Query Frame = 3
Query: 399 SSVEEVTIIKNSLLQVAAMTERGQLANDEQRNDVELLVGRLE--ELKEEDQPYNDENMVGIWTLVYSSSQAFRSSPFFATFQ-ALLGREGVAERIFTFTDEFPNAKIGQARQIVSEDCTELLSRVEMSLWPHRWISGVVETRSRIVNDDVGDRLEVIVDSTRVKESILGKISPRLEGWQVPVDQLSERIFDR-IPRITLETVFLDQDLRISRL-PDRNFLIYIK 1055
SSV + +K LL+ A +RGQ+A + Q+ ++E+++ +LE + +Q E + G W LVY+S +AFRSSPFF FQ L+G E +A IF FTD P A +GQA Q + E +S V++ ++P G V T S + L + V++TRV S L + L+ VPV + E + R ++ + FLD +LR++R PD +Y K
Sbjct: 31 SSVAVDSDLKKVLLRHVAGIDRGQVATESQKQEIEMVISQLEASQAPMSEQLEVQEALQGKWQLVYTSVEAFRSSPFFWAFQEGLVGSEELASAIFKFTDAIPGATVGQAFQTFDFNTGECVSEVDLEVFPGA--KGCVVTTSTVRCSTPPTCLVLTVENTRVARSNL--LPFLLDSVVVPVKDVVEAVRGRGKTAVSADMTFLDGELRVARTRPDGAIFVYRK 250
BLAST of mRNA_A-nodosum_M_contig105.70.1 vs. uniprot
Match: A0A1X6P059_PORUM (PAP_fibrillin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P059_PORUM) HSP 1 Score: 102 bits (255), Expect = 3.390e-20 Identity = 72/215 (33.49%), Postives = 113/215 (52.56%), Query Frame = 3
Query: 417 TIIKNSLLQVAAMTERGQLANDEQRNDVELLVGRLEELKEEDQPYNDENMVGIWTLVYSSSQAFRSSPFFATFQALLGREGVAERIFTFTDEFPNAKIGQARQIVSEDCTELLSRVEMSLWPHRWISGVVETRSRIVNDDVGDRLEVIVDSTRVK-ESILGKISPRLEGWQVPVDQLSERIFD-RIPRITLETVFLDQDLRISRLPDRNFLIYIK 1055
T +K LL++AA T+RGQLA Q+ VE LV LE D P + + G W LVY+S F+++P P +GQ +Q++ D EL++ VE++ +P I+G V T +R V G+RLE++V+ T VK +S+ GK+ G +PV+QL ++ + +P L+T +LD+ +RISR + +Y K
Sbjct: 160 TEMKGKLLEIAAATDRGQLATSAQKEAVEDLVSMLEAANPTDSPVDTALIDGTWLLVYASKPLFKTTP------------------LLLAAATPLLVVGQVKQMLRVDSGELVNDVEVTAFP--MITGTVSTTAR-VTPITGERLELVVEKTGVKGKSLAGKLDLGGLGGSLPVEQLYGKLKNGAVPETFLDTFYLDEKMRISRGKGGSIYVYTK 353
BLAST of mRNA_A-nodosum_M_contig105.70.1 vs. uniprot
Match: A0A5J4Z5Z5_PORPP (Light-induced protein, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z5Z5_PORPP) HSP 1 Score: 100 bits (250), Expect = 3.210e-19 Identity = 72/214 (33.64%), Postives = 113/214 (52.80%), Query Frame = 3
Query: 420 IIKNSLLQVAAMTERGQLANDEQRNDVELLVGRLEELKEEDQPYNDENMVGIWTLVYSSSQAFRSSPFFATFQALLGREGVAERIFTFTDEFPNAKIGQARQIVSEDCTELLSRVEMSLWPHRWISGVVETRSRIVNDDVGDRLEVIVDSTRVKE-SILGKISPRLEGWQVPVDQLSERIFDRIPRITLETVFLDQDLRISRLPDRNFLIYIKD 1058
++K L+ +AA + RGQ A+ QR+ +E+L RLEEL P + + G+W L+YSS+Q +++SPF LLG P ++G RQ + D E ++ V ++ +P ISG V T RI G RLE V+ T +K SI G++ + +PV Q+ ER+ +P +TV+LD +RISR + I++K+
Sbjct: 224 VLKTRLVTLAAASNRGQSASVTQRDLIEVLAKRLEELNPNPDPVDMPMIDGVWDLIYSSTQLYKTSPF------LLGAAT------------PLVQVGLVRQTIFVDSGEAINEVSVTSFPA--ISGRVITTMRIAPVS-GKRLECKVEKTELKGGSIAGRLDIGMLDVDIPVQQVVERLNGTVPETFFDTVYLDDLMRISRSKNGALYIFVKE 416
BLAST of mRNA_A-nodosum_M_contig105.70.1 vs. uniprot
Match: B8BQA8_THAPS (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQA8_THAPS) HSP 1 Score: 98.2 bits (243), Expect = 5.710e-19 Identity = 76/221 (34.39%), Postives = 118/221 (53.39%), Query Frame = 3
Query: 423 IKNSLLQVAAMTERGQLANDEQRNDVELLVGRLEELKEEDQPYNDENMVGIWTLVYSSSQAFRSSPFFATFQALLGR--EGVAERIFTFTDEFPNA-KIGQARQIVSEDCTELLSRVEMSLW-----PHRWISGVVETRSRIVNDDVGDRLEVIVDSTRVKESILGKISPRLE--GWQVPVDQLSERIFDRIPRITLETVFLDQDLRISRLPDRNFLIYIK 1055
+K LL ++++T RGQ A+ E+ N V LV +LE L P N G W L YSS+Q+FRSSPFF ++ +G + +AE F D A ++G+ RQIV EL+S E+S+ P R + G V T S + + E+ V +T+VK S + L+ G ++PV + + I +P L+T ++D+ +RISR D NF ++ +
Sbjct: 86 LKRELLLLSSVTNRGQCASQEEENLVVDLVTQLEALNPTADPAL--NSQGDWELCYSSTQSFRSSPFFLAIRSFMGESNKSMAENAFDIHDRATTASRVGKVRQIVDAGNMELISEYELSVGLLPGLPVR-VKGTVIT-SADMRAIAPETWELTVKATKVKGSNVPFFDQYLDDSGLELPVGEAYKAISGSVPVSVLKTFYVDEGMRISRDVDDNFFVFTR 302
BLAST of mRNA_A-nodosum_M_contig105.70.1 vs. uniprot
Match: K0SUV6_THAOC (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUV6_THAOC) HSP 1 Score: 96.7 bits (239), Expect = 3.820e-18 Identity = 82/217 (37.79%), Postives = 117/217 (53.92%), Query Frame = 3
Query: 423 IKNSLLQVAAMTERGQLANDEQRNDVELLVGRLEELKEEDQPYNDENMVGIWTLVYSSSQAFRSSPFFATFQALLGREG--VAERIFTFTDEFPNA-KIGQARQIVSEDCTELLSRVEMSLW-----PHRWISGVVETRSRIVNDDVGDRLEVIVDSTRVKESILGKISPRLEGWQV--PVDQLSERIFDR-IPRITLETVFLDQDLRISRLPDRNF 1040
+K L+ +A+ T RGQ A E++N V LV +LE L P N G W L YSS+Q+FRSSPFF +A LG + VAE F+ D A ++G+ RQI+ TEL+S ++S+ P R + G V T S ++ + E+ V TRVK S + I L+ QV PV ++ E I +P L+T ++D+ +RISR D NF
Sbjct: 76 LKRELILLASTTNRGQCATLEEQNLVIDLVTQLEALNPTADPAL--NSQGDWELCYSSTQSFRSSPFFLAIRAFLGDDNKEVAENAFSIHDMATTASRVGKVRQIIDSYNTELISEYDLSVGVAPGLPVR-VKGCVVT-SADLSVSAPETWEMKVRGTRVKSSNVPFIDEWLDDSQVEVPVGRVYEAINGGDVPAAILKTYYVDEGMRISRDADENF 288
BLAST of mRNA_A-nodosum_M_contig105.70.1 vs. uniprot
Match: A0A7S2Y236_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y236_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 8.180e-18 Identity = 71/220 (32.27%), Postives = 120/220 (54.55%), Query Frame = 3
Query: 423 IKNSLLQVAAMTERGQLANDEQRNDVELLVGRLEELKEEDQPYNDENMVGIWTLVYSSSQAFRSSPFFATFQALLG--REGVAERIFTFTDEFPNA-KIGQARQIVSEDCTELLSRVEMSLWPHR--WISGVVETRS--RIVNDDVGDRLEVIVDSTRVKESILGKISPRLEGW--QVPVDQLSERIFDRIPRITLETVFLDQDLRISRLPDRNFLIYIK 1055
+K LL +++++ RG+ A+ + +N + LV +LE L + P G W L SS+Q FRSSPFF T +A +G + +AE F D A +IG+ RQ + D +E+ ++P + G V TR+ R V+ + E+ V +T VK S + ++ L+ ++PV+Q+ ERI +P + L+T ++D+ +RI+R D NF +Y +
Sbjct: 84 LKRELLLLSSVSNRGEFASLDDQNVITDLVAQLEALNPTEDPAM--KCEGEWDLALSSTQFFRSSPFFLTIRAAMGASNKAMAENAFDIHDRATTAGRIGRVRQTIVGDTLTSEVDLEVGVFPGLPFRVKGSVITRASFRPVSSETA---ELQVGATEVKGSNIPILNQYLDNLKLELPVNQIFERIQGSVPTVELKTYYIDEGMRITRDMDDNFFVYTR 298
BLAST of mRNA_A-nodosum_M_contig105.70.1 vs. uniprot
Match: A0A0D2KT63_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KT63_9CHLO) HSP 1 Score: 95.1 bits (235), Expect = 1.120e-17 Identity = 67/174 (38.51%), Postives = 97/174 (55.75%), Query Frame = 3
Query: 570 GIWTLVYSSSQAFRSSPFFATFQALL-------GREG--------VAERIFTFTDEFPNAKIGQARQIVSEDCTELLSRVEMSLWPHRWISGVVETRSRIVNDDVGDR-------LEVIVDSTRVKESILGKISPRLEGWQVPVDQLSERIF-DRIPRITLETVFLDQDLRISR 1022
G W L+Y++++AFR+SPFFA+F ++ G G +A+ IF FTD P A IG A QI++ L+S V++S++P + G V TRSR+ LE+ V+STRV+ S SP L+ VPV+QL ER+ R+T E FLDQ+LR++R
Sbjct: 163 GRWELLYANTEAFRNSPFFASFSNVVSGLADVAGLSGTIDVPNGALADAIFAFTDAIPGATIGAAYQIITPGA--LVSEVDLSVFPG--LRGTVVTRSRLERPATAGGAGGAPQVLELFVESTRVERS---NFSPLLDQVSVPVEQLIERLRGSEAARVTYEVTFLDQNLRVTR 329
BLAST of mRNA_A-nodosum_M_contig105.70.1 vs. uniprot
Match: A0A7S2Q3I4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3I4_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.840e-17 Identity = 73/220 (33.18%), Postives = 118/220 (53.64%), Query Frame = 3
Query: 423 IKNSLLQVAAMTERGQLANDEQRNDVELLVGRLEELKEEDQPYNDENMVGIWTLVYSSSQAFRSSPFFATFQALLGREG--VAERIFTFTDEFPNA-KIGQARQIVSEDCTELLSRVEMS--LWPHR--WISGVVETRSRIVNDDVGDRLEVIVDSTRVKESILGKISPRLEG--WQVPVDQLSERIFDRIPRITLETVFLDQDLRISRLPDRNFLIYIK 1055
+K L+ ++++T RG A E+ N V LV +LE L P N G W L YSS+Q+FRSSPFF ++ LG + +AE F D A ++G+ RQI+ ++ EL+S E+S L P + G V T + + + + E+ V T+VK S + + L+ +VPV + + + +P TL+T ++D+ LRI+R D NF ++ +
Sbjct: 66 LKRELILLSSVTNRGSCATTEESNLVVDLVTQLEALNPTADPAA--NCQGDWELCYSSTQSFRSSPFFLAIRSFLGDDNKQIAESAFDIHDAATTASRVGKVRQIIDKNNNELVSEYEVSVGLLPGLPVQVKGTVITSAEM-SVIRPESWELEVKGTKVKGSNVPFLDAFLDDSDLEVPVGEAYKAVSGAVPVSTLKTFYVDEGLRITRDVDENFYVFTR 282 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig105.70.1 >prot_A-nodosum_M_contig105.70.1 ID=prot_A-nodosum_M_contig105.70.1|Name=mRNA_A-nodosum_M_contig105.70.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=285bp MRFLFIVVLPPFVTCFMCNGPGREGGRQAIFKGRQYPSYSSSGSISTDKRback to top mRNA from alignment at A-nodosum_M_contig105:700722..705171+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig105.70.1 ID=mRNA_A-nodosum_M_contig105.70.1|Name=mRNA_A-nodosum_M_contig105.70.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4450bp|location=Sequence derived from alignment at A-nodosum_M_contig105:700722..705171+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig105:700722..705171+ >mRNA_A-nodosum_M_contig105.70.1 ID=mRNA_A-nodosum_M_contig105.70.1|Name=mRNA_A-nodosum_M_contig105.70.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=855bp|location=Sequence derived from alignment at A-nodosum_M_contig105:700722..705171+ (Ascophyllum nodosum dioecious)back to top |