mRNA_A-nodosum_M_contig105.43.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig105.43.1
Unique NamemRNA_A-nodosum_M_contig105.43.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig105.43.1 vs. uniprot
Match: A0A6H5JDR1_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDR1_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.160e-9
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 3 
Query:  129 ATRLAIEPHTGLAPKRWMGSADNHIGIVAVARIDFR---VQDWAV 254
            ATRLAIEPH GLAP +W G   NH+G VAVAR+D R   V+DW V
Sbjct:  138 ATRLAIEPHNGLAPPKWQGGPHNHLGTVAVARMDLRDFTVEDWRV 182
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDR1_9PHAE1.160e-964.44MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig105contigA-nodosum_M_contig105:522622..523439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size392
Hectar predicted targeting categoryother localisation
Exons2
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866424.7377646-CDS-A-nodosum_M_contig105:522621..5228721680866424.7377646-CDS-A-nodosum_M_contig105:522621..522872Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 522622..522872 +
1680866424.7508948-CDS-A-nodosum_M_contig105:523300..5233821680866424.7508948-CDS-A-nodosum_M_contig105:523300..523382Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 523301..523382 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866424.7622643-UTR-A-nodosum_M_contig105:523382..5234391680866424.7622643-UTR-A-nodosum_M_contig105:523382..523439Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 523383..523439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig105.43.1prot_A-nodosum_M_contig105.43.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig105 522622..523382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig105.43.1

>prot_A-nodosum_M_contig105.43.1 ID=prot_A-nodosum_M_contig105.43.1|Name=mRNA_A-nodosum_M_contig105.43.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=111bp
STHTSAFKAVAFQSPATVHRNRNSSRGILLECDDRTTCRTRIRLHGWQSS
PTRAWHLSAGWVVPIITSGSWLWRVSTSGCKTGRYIMRQELAAEDRSGQD
TRTRWIGSSF*
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mRNA from alignment at A-nodosum_M_contig105:522622..523439+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig105.43.1 ID=mRNA_A-nodosum_M_contig105.43.1|Name=mRNA_A-nodosum_M_contig105.43.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=818bp|location=Sequence derived from alignment at A-nodosum_M_contig105:522622..523439+ (Ascophyllum nodosum dioecious)
TCAACCCACACCTCAGCATTTAAAGCCGTCGCTTTCCAGTCCCCCGCTAC
TGTACACCGTAACAGAAATTCCTCGAGAGGAATTCTTCTAGAGTGTGACG
ATCGAACCACCTGTCGTACGAGGATCAGGCTACACGGTTGGCAATCGAGC
CCCACACGGGCTTGGCACCTAAGCGCTGGATGGGTAGTGCCGATAATCAC
ATCGGGATCGTGGCTGTGGCGCGTATCGACTTCAGGGTGCAAGACTGGGC
GGTAAGAAGTAAGTGTTGTGAGGAGTGCTTGAACAGACTTTAGTTTCCAC
TGCTATAAGGTTCTAAAATCCCTCGAAGGTAGGGCTTGAATACACAGGGT
AGCGCTGTTTCGTCCTCCGCCGTATTGTCTGTCCTGAACTTCGTGAACGC
AGACCGTAACTCACTGCAAAACGCTTCTCTCGTGGCCGTTTCTGTTTCGT
TTTTGTTCTCACTTTTTGACAACAAGGCCGTAGGTTACCACTCCCACTAC
CCTACCGTAACGCCTCCAATCGCCTCCAATCCCACCTGATCTATTATCAC
CTGTTCATGTCCACATTGTAAGCTATTGGTGAACTTTCACTAGTCACTTG
ATTAATCTTTAACTGTACGTACTCTCTTGTGCATTTTTCTATTTTGTCTT
TTTGCAAATTTCCCTTTTTATCATGTCAGGTACATAATGCGGCAAGAACT
CGCCGCTGAAGATAGGAGCGGTCAGGACACGCGAACCAGATGGATAGGGA
GCAGCTTTTGAGCTGGCCATGGATCATCTCGCTCCTTGATTTAAAAGGGT
ACTGTTGTATCGTGATTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig105:522622..523439+

>mRNA_A-nodosum_M_contig105.43.1 ID=mRNA_A-nodosum_M_contig105.43.1|Name=mRNA_A-nodosum_M_contig105.43.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=333bp|location=Sequence derived from alignment at A-nodosum_M_contig105:522622..523439+ (Ascophyllum nodosum dioecious)
TCAACCCACACCTCAGCATTTAAAGCCGTCGCTTTCCAGTCCCCCGCTAC
TGTACACCGTAACAGAAATTCCTCGAGAGGAATTCTTCTAGAGTGTGACG
ATCGAACCACCTGTCGTACGAGGATCAGGCTACACGGTTGGCAATCGAGC
CCCACACGGGCTTGGCACCTAAGCGCTGGATGGGTAGTGCCGATAATCAC
ATCGGGATCGTGGCTGTGGCGCGTATCGACTTCAGGGTGCAAGACTGGGC
GGTACATAATGCGGCAAGAACTCGCCGCTGAAGATAGGAGCGGTCAGGAC
ACGCGAACCAGATGGATAGGGAGCAGCTTTTGA
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