mRNA_A-nodosum_M_contig105.35.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig105.35.1
Unique NamemRNA_A-nodosum_M_contig105.35.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig105contigA-nodosum_M_contig105:459368..460921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1554
Hectar predicted targeting categoryother localisation
Exons1
Cds size1554
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866425.1438065-CDS-A-nodosum_M_contig105:459367..4609211680866425.1438065-CDS-A-nodosum_M_contig105:459367..460921Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 459368..460921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig105.35.1prot_A-nodosum_M_contig105.35.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig105 459368..460921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig105.35.1

>prot_A-nodosum_M_contig105.35.1 ID=prot_A-nodosum_M_contig105.35.1|Name=mRNA_A-nodosum_M_contig105.35.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=518bp
METKATTFVTPLTPSNSTYGAMDATGRISQSQTRVGAFYPGSAAGLAREE
LPGYTGNETNQISSFVTQRKGKKQVGPQYSQDASEAPMRKGVAVATEIQL
PWNFSDVSAIPAAFHGVNLESVEATNQKRSSGANATAGPDAAQRPRGGDG
DTQVRTSANPLTTPADTYGTKGNSCYTSRHQTKVITFRPGTTASSAGNEY
SESTCNQFHQALNARRLPEFKQAESRYSRNDTTIPARKDVAVATEIQLTW
NISPNSSVCRGVQLTSAMAAKDERRSIGFRATRNSDAVQFKGGDMETKAA
TSVTLLTPFTSICGAGDDAGNNNQGRTRVRATHPHSIASLVQGESPDYTC
DRPNQVSNETRRAKEEEQAGPRHFQSATRAPTQKGSAIATERQLPSNLVD
VSSIPSASLGVTPSSVKATVEKRSSEVIATGSSCADQRFRGGDRDTEDAN
STAPLVLRTGTYATIDNSHHTCQGRTRQSDFYLGSVVASARDELSGSVSY
PPSQALRNAKGGKEKRQA
back to top

mRNA from alignment at A-nodosum_M_contig105:459368..460921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig105.35.1 ID=mRNA_A-nodosum_M_contig105.35.1|Name=mRNA_A-nodosum_M_contig105.35.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1554bp|location=Sequence derived from alignment at A-nodosum_M_contig105:459368..460921+ (Ascophyllum nodosum dioecious)
ATGGAGACCAAAGCGACGACCTTTGTGACTCCATTGACGCCATCTAATAG
CACGTACGGTGCTATGGATGCTACTGGCCGCATTAGCCAAAGCCAAACGA
GGGTAGGGGCTTTCTATCCGGGTTCGGCAGCGGGCTTGGCGCGAGAAGAG
CTTCCGGGTTATACGGGCAATGAGACCAACCAGATTTCGAGTTTTGTTAC
ACAAAGGAAAGGGAAGAAACAGGTGGGGCCACAATACTCTCAGGATGCCA
GTGAAGCGCCAATGCGAAAGGGTGTAGCTGTTGCGACGGAAATACAGCTT
CCATGGAATTTTTCCGACGTTTCGGCGATCCCGGCTGCCTTTCACGGAGT
TAATCTGGAGTCAGTTGAGGCGACGAATCAAAAACGTAGTAGCGGGGCGA
ATGCTACAGCAGGTCCGGACGCCGCCCAGCGTCCCCGAGGCGGGGATGGG
GATACCCAAGTCAGAACCTCTGCGAATCCGCTGACTACGCCTGCTGATAC
CTACGGTACTAAGGGCAACTCTTGCTACACCAGCCGTCATCAAACGAAAG
TTATCACTTTTCGTCCCGGCACAACAGCGAGCTCGGCAGGAAACGAGTAC
TCGGAATCTACGTGTAATCAGTTTCATCAAGCATTAAATGCCAGACGACT
GCCAGAGTTCAAACAAGCGGAGTCACGATACTCCCGGAACGACACGACAA
TTCCAGCACGGAAGGATGTAGCTGTTGCGACGGAAATACAGCTTACATGG
AATATCTCGCCGAATTCTTCTGTTTGCCGCGGAGTACAGCTGACGTCGGC
AATGGCAGCCAAGGACGAAAGACGTAGCATCGGTTTTAGAGCTACAAGGA
ACTCAGACGCCGTCCAGTTTAAAGGCGGGGATATGGAGACTAAAGCGGCG
ACCTCTGTGACCCTTTTGACGCCTTTTACTAGCATCTGTGGTGCAGGGGA
TGATGCTGGTAACAACAATCAAGGCCGTACGCGGGTAAGGGCTACTCATC
CCCATTCGATAGCGAGCTTGGTGCAAGGAGAGTCTCCGGACTATACTTGC
GATCGACCCAATCAGGTTTCGAATGAGACCAGACGAGCGAAAGAGGAGGA
ACAGGCGGGGCCACGACATTTCCAGAGCGCCACCAGAGCCCCCACGCAAA
AGGGTAGCGCTATTGCAACGGAAAGACAGCTTCCATCAAATCTCGTCGAC
GTTTCTTCGATCCCCTCCGCTTCTCTCGGAGTAACGCCAAGCTCAGTAAA
GGCGACGGTTGAAAAACGTTCTAGCGAGGTGATTGCTACAGGAAGCTCGT
GCGCTGACCAACGCTTCCGAGGCGGGGACAGGGACACCGAAGATGCGAAC
TCTACGGCTCCATTGGTTCTACGTACTGGTACCTACGCGACCATTGACAA
CTCTCACCACACCTGCCAAGGTCGAACGAGACAAAGCGATTTTTATCTCG
GCTCGGTAGTGGCTTCGGCGCGAGACGAGCTTTCGGGATCCGTGAGTTAT
CCGCCCAGTCAGGCCTTGAGAAATGCCAAAGGTGGAAAAGAAAAGAGACA
GGCG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig105:459368..460921+

>mRNA_A-nodosum_M_contig105.35.1 ID=mRNA_A-nodosum_M_contig105.35.1|Name=mRNA_A-nodosum_M_contig105.35.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at A-nodosum_M_contig105:459368..460921+ (Ascophyllum nodosum dioecious)
ATGGAGACCAAAGCGACGACCTTTGTGACTCCATTGACGCCATCTAATAG
CACGTACGGTGCTATGGATGCTACTGGCCGCATTAGCCAAAGCCAAACGA
GGGTAGGGGCTTTCTATCCGGGTTCGGCAGCGGGCTTGGCGCGAGAAGAG
CTTCCGGGTTATACGGGCAATGAGACCAACCAGATTTCGAGTTTTGTTAC
ACAAAGGAAAGGGAAGAAACAGGTGGGGCCACAATACTCTCAGGATGCCA
GTGAAGCGCCAATGCGAAAGGGTGTAGCTGTTGCGACGGAAATACAGCTT
CCATGGAATTTTTCCGACGTTTCGGCGATCCCGGCTGCCTTTCACGGAGT
TAATCTGGAGTCAGTTGAGGCGACGAATCAAAAACGTAGTAGCGGGGCGA
ATGCTACAGCAGGTCCGGACGCCGCCCAGCGTCCCCGAGGCGGGGATGGG
GATACCCAAGTCAGAACCTCTGCGAATCCGCTGACTACGCCTGCTGATAC
CTACGGTACTAAGGGCAACTCTTGCTACACCAGCCGTCATCAAACGAAAG
TTATCACTTTTCGTCCCGGCACAACAGCGAGCTCGGCAGGAAACGAGTAC
TCGGAATCTACGTGTAATCAGTTTCATCAAGCATTAAATGCCAGACGACT
GCCAGAGTTCAAACAAGCGGAGTCACGATACTCCCGGAACGACACGACAA
TTCCAGCACGGAAGGATGTAGCTGTTGCGACGGAAATACAGCTTACATGG
AATATCTCGCCGAATTCTTCTGTTTGCCGCGGAGTACAGCTGACGTCGGC
AATGGCAGCCAAGGACGAAAGACGTAGCATCGGTTTTAGAGCTACAAGGA
ACTCAGACGCCGTCCAGTTTAAAGGCGGGGATATGGAGACTAAAGCGGCG
ACCTCTGTGACCCTTTTGACGCCTTTTACTAGCATCTGTGGTGCAGGGGA
TGATGCTGGTAACAACAATCAAGGCCGTACGCGGGTAAGGGCTACTCATC
CCCATTCGATAGCGAGCTTGGTGCAAGGAGAGTCTCCGGACTATACTTGC
GATCGACCCAATCAGGTTTCGAATGAGACCAGACGAGCGAAAGAGGAGGA
ACAGGCGGGGCCACGACATTTCCAGAGCGCCACCAGAGCCCCCACGCAAA
AGGGTAGCGCTATTGCAACGGAAAGACAGCTTCCATCAAATCTCGTCGAC
GTTTCTTCGATCCCCTCCGCTTCTCTCGGAGTAACGCCAAGCTCAGTAAA
GGCGACGGTTGAAAAACGTTCTAGCGAGGTGATTGCTACAGGAAGCTCGT
GCGCTGACCAACGCTTCCGAGGCGGGGACAGGGACACCGAAGATGCGAAC
TCTACGGCTCCATTGGTTCTACGTACTGGTACCTACGCGACCATTGACAA
CTCTCACCACACCTGCCAAGGTCGAACGAGACAAAGCGATTTTTATCTCG
GCTCGGTAGTGGCTTCGGCGCGAGACGAGCTTTCGGGATCCGTGAGTTAT
CCGCCCAGTCAGGCCTTGAGAAATGCCAAAGGTGGAAAAGAAAAGAGACA
GGCG
back to top