mRNA_A-nodosum_M_contig1049.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1049.2.1
Unique NamemRNA_A-nodosum_M_contig1049.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 1.230e-104
Identity = 182/301 (60.47%), Postives = 231/301 (76.74%), Query Frame = 3
Query: 1203 RSLLLSLNKSFQPTA*--ESTPGTMCMASRGTQR*VRSDRLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMN 2099
            + LL SLNK+F PT    E      C   R  +    + R+S  AY++S++ RFD+ +TS IPASPG D+G KR DESGG WPVREA+GS++W+ST +RPDI  AVRAVAR+AH P ER W+AI+KIL YL  T+   ITY RGSGLGL +Y DA YAD A +RRSVS +A T+ G V+SH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSFIAPE SG+SI+VLE+ QGA AL++NPLSSARSKH+DVR+HFIR LFR+  IS + V+++EQH D++TK LS+++ QYHR+ LMN
Sbjct:  210 KELLASLNKAF-PTKDLGECVWFDGCAVERDLE--AGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506          
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 1.860e-100
Identity = 228/524 (43.51%), Postives = 300/524 (57.25%), Query Frame = 3
Query:  576 SPIGRKPSKVESPPHTVAGVEGSVYREG*NSPCNQSSRGT*KREP----SRW*TGYRRDVSL*TLKVFRL*NRQGGKDRQV*TKVSCQGIHADP*RGLHPPIFPLFVIGIQKAGTRSSKPRGVATVPFRRSTVVHSSLTRRKG-----LHETPRRLW*KLEKDRQVGEGGLRSEAE--WAQMGSFVCGYSDSGWF*TVYGWPMHFPQDYRRGHSHDHWCLRSLLLSLNKSFQPTA*ESTPGTMCMASRGTQR*VRSD--RLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
            SPIG++PS VESPP TVAGV  SVYREG      +   G           RW T   ++  + TLK  R+   +G    Q+ + +S       P       I  +  +  +K    +      A         V   L    G     + +  R ++   +  RQ G     +  E  + Q  +  C +        V    ++       G   D      LL SLNK F PT  ++            +R V +   R+S  AY++S+++RFD+ +TS IPA+PGADLG KR D+ GG WPVREAVGS++W+ST +RPD+  AVRAVAR+AH P +R W AI KIL YL GT+   ITY RGSGLGL +Y DA YAD   +RRSVSR+A T+ G VVSH SK + +VSLS++EAEYIAAG+GVKEA+ VR VLSF+APE  G+SI+VLE+ QGA AL++NPLSS   KH+DVRFHFIR LFR+   S + V + EQH DI+T+ LSRA+ QYHR+ LMNL E
Sbjct:  330 SPIGKRPSDVESPPMTVAGVNKSVYREGWEQAMREEFEGHLGHGDVFIRRRWKTN--KEGKIDTLKARRV--ARGFS--QITSIISIPSSSPCP---SSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED---CEELLASLNKKF-PT--KNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYAD-TEDRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQALSRASLQYHRRKLMNLPE 837          
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 350 bits (897), Expect = 4.560e-100
Identity = 229/532 (43.05%), Postives = 302/532 (56.77%), Query Frame = 3
Query:  576 SPIGRKPSKVESPPHTVAGVEGSVYREG*NSPCNQSSRGT*KREPSRW*TGY---RRDVSL*TLKVFRL*NRQGGKDRQV*TKVSCQGIHADP*RGLHPPIFPLFVIGIQKAGTRSSKPRGVATVPFR-RSTVVHSSLTRRKGLH-------------ETPRRLW*KLEKDRQVGEGGLRSEAE--WAQMGSFVCGYSDSGWF*TVYGWPMHFPQDYRRGHSHDHWCLRSLLLSLNKSFQPTA*ESTPGTMCMASRGTQR*VRSD--RLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
            SPIG++PS VE+PP TVAGV  SVYREG      +   G        +  G    RR VS  +   F     + GK      ++  +G    P         P       K     +  +G+    +  +    H++L     L              +  R ++   +  RQ G     +  E  + Q  +  C +        V    ++       G   D      LL SLNK F PT  ++            +R V +   R+S  AY++S+++RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+  AVRAVAR+AH P +R W AI KIL YL GT+   ITY RGSGLGL +Y DA YAD   +RRSVS +A T+ G VVSH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSF+APE SG+SIKVLE+ QGA AL++NPLSS R+KH+DVR+HFIR LFR+  IS + V + EQH D++TK LSR + QYHR+ LMNL E
Sbjct:  724 SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVS--SKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED---CEELLASLNKKF-PT--KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1246          
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 350 bits (897), Expect = 1.160e-98
Identity = 229/532 (43.05%), Postives = 302/532 (56.77%), Query Frame = 3
Query:  576 SPIGRKPSKVESPPHTVAGVEGSVYREG*NSPCNQSSRGT*KREPSRW*TGY---RRDVSL*TLKVFRL*NRQGGKDRQV*TKVSCQGIHADP*RGLHPPIFPLFVIGIQKAGTRSSKPRGVATVPFR-RSTVVHSSLTRRKGLH-------------ETPRRLW*KLEKDRQVGEGGLRSEAE--WAQMGSFVCGYSDSGWF*TVYGWPMHFPQDYRRGHSHDHWCLRSLLLSLNKSFQPTA*ESTPGTMCMASRGTQR*VRSD--RLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
            SPIG++PS VE+PP TVAGV  SVYREG      +   G        +  G    RR VS  +   F     + GK      ++  +G    P         P       K     +  +G+    +  +    H++L     L              +  R ++   +  RQ G     +  E  + Q  +  C +        V    ++       G   D      LL SLNK F PT  ++            +R V +   R+S  AY++S+++RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+  AVRAVAR+AH P +R W AI KIL YL GT+   ITY RGSGLGL +Y DA YAD   +RRSVS +A T+ G VVSH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSF+APE SG+SIKVLE+ QGA AL++NPLSS R+KH+DVR+HFIR LFR+  IS + V + EQH D++TK LSR + QYHR+ LMNL E
Sbjct: 1103 SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVS--SKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED---CEELLASLNKKF-PT--KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1625          
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 350 bits (897), Expect = 2.050e-98
Identity = 229/532 (43.05%), Postives = 302/532 (56.77%), Query Frame = 3
Query:  576 SPIGRKPSKVESPPHTVAGVEGSVYREG*NSPCNQSSRGT*KREPSRW*TGY---RRDVSL*TLKVFRL*NRQGGKDRQV*TKVSCQGIHADP*RGLHPPIFPLFVIGIQKAGTRSSKPRGVATVPFR-RSTVVHSSLTRRKGLH-------------ETPRRLW*KLEKDRQVGEGGLRSEAE--WAQMGSFVCGYSDSGWF*TVYGWPMHFPQDYRRGHSHDHWCLRSLLLSLNKSFQPTA*ESTPGTMCMASRGTQR*VRSD--RLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
            SPIG++PS VE+PP TVAGV  SVYREG      +   G        +  G    RR VS  +   F     + GK      ++  +G    P         P       K     +  +G+    +  +    H++L     L              +  R ++   +  RQ G     +  E  + Q  +  C +        V    ++       G   D      LL SLNK F PT  ++            +R V +   R+S  AY++S+++RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+  AVRAVAR+AH P +R W AI KIL YL GT+   ITY RGSGLGL +Y DA YAD   +RRSVS +A T+ G VVSH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSF+APE SG+SIKVLE+ QGA AL++NPLSS R+KH+DVR+HFIR LFR+  IS + V + EQH D++TK LSR + QYHR+ LMNL E
Sbjct: 1266 SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVS--SKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED---CEELLASLNKKF-PT--KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1788          
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 2.250e-97
Identity = 176/302 (58.28%), Postives = 221/302 (73.18%), Query Frame = 3
Query: 1209 LLLSLNKSFQPTA*ESTPGTMCMASRGTQR*VRSD--RLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
            LL SLNK F PT  ++            +R V +   R+S  AY++S++ RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+  AVRAVAR+AH P +R W AI KIL YL GT+   ITY RGSGLGL +Y DA YAD   +RRSVS +A T+ G VVSH SKTQ +VSLS+ EAEYIAAG+GVKEA+ VR VL F+APE  G+SI+VLE+ QGA AL++NPLSS R+ H+DVRFHFIR LF +  IS + V + EQH D++TK L +A+ QYHR+ LMNL E
Sbjct:  460 LLASLNKKF-PT--KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIRGLFGSGDISVKFVPTTEQHADLLTKALRKASLQYHRRKLMNLPE 757          
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5KCA5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA5_9PHAE)

HSP 1 Score: 312 bits (800), Expect = 3.260e-96
Identity = 159/260 (61.15%), Postives = 201/260 (77.31%), Query Frame = 3
Query: 1344 LIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPL-----SSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
            +++RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+  AVRAVAR+AH P +R W AI KIL YL GT+   ITY RGSGLGL +Y DA YAD   +RRSVS +A T  G VVSH SK Q +VSLS++EAE+IAAG+GVKEA+ +R VLSF+APE  G+SI+VLE+ QG  AL++NPL     SS R+KH+DVRFHFIR LFR+  I+ + V + EQH D++T+ LSRA+ QYHR+ LMNL E
Sbjct:    1 MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTGGGTVVSHGSKKQSIVSLSSTEAEHIAAGEGVKEALFMRAVLSFVAPETRGSSIQVLEDNQGGMALVQNPLVQNPLSSGRTKHIDVRFHFIRGLFRSGDITVKFVPTTEQHADLLTQALSRASLQYHRRKLMNLPE 259          
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 4.160e-96
Identity = 184/304 (60.53%), Postives = 233/304 (76.64%), Query Frame = 3
Query: 1203 RSLLLSLNKSFQPTA*--ESTPGTMCMASRGTQR*VRSDRLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
            + LL SLNK+F PT    E      C   R  +  +   R+S  AY++ ++ RFD+ +TS IPASPG D+G KR DESGG WPVREA+GS++W+ST +RPDI  AVRAVAR+AH P ER W+AI+KIL YL  T+   ITY RGSGLGLE+Y DA YAD A +RRSVS +A T+ G V+SH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSFIAPE SG+SI+VLE+ QGA AL++NPLSSARSKH+DVR+HFIR LFR+  IS + V+++EQH D++TK LS+++ QYHR+ LMNL E
Sbjct: 1599 KELLASLNKAF-PTKDLGECVWFDGCAVERDLEAGMTL-RISQTAYID-IVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 1898          
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 2.670e-95
Identity = 164/255 (64.31%), Postives = 204/255 (80.00%), Query Frame = 3
Query: 1344 LIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
            +++RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+  AVRAVAR+AH P +R W AI KIL YL GT+   ITY RGSGLGL +Y DA YAD   +RRSVS +A T+ G VVSH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSF+APE SG+SI+VLE+ QGA AL++NPLSS R+KH+DVR+HFIR LFR+  IS + V + EQH D++TK LSR + QYHR+ LMNL E
Sbjct:  601 MVERFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 854          
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 3.360e-92
Identity = 220/517 (42.55%), Postives = 291/517 (56.29%), Query Frame = 3
Query:  576 SPIGRKPSKVESPPHTVAGVEGSVYREG*NSPCNQSSRGT*KREPSRW*TGY---RRDVSL*TLKVFRL*NRQGGKDRQV*TKVSCQGIHADP*RGLHPPIFPLFVIGIQKAGTRSSKPRGVATVPFR-RSTVVHSSLTRRKGLH-------------ETPRRLW*KLEKDRQVGEGGLRSEAE--WAQMGSFVCGYSDSGWF*TVYGWPMHFPQDYRRGHSHDHWCLRSLLLSLNKSFQPTA*ESTPGTMCMASRGTQR*VRSD--RLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSR 2063
            SPIG++PS VE+PP TVAGV  SVYREG      +   G        +  G    RR VS  +   F     + GK      ++  +G    P         P       K     +  +G+    +  +    H++L     L              +  R ++   +  RQ G     +  E  + Q  +  C +        V    ++       G   D      LL SLNK F PT  ++            +R V +   R+S  AY++S+++RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+  AVRAVAR+AH P +R W AI KIL YL GT+   ITY RGSGLGL +Y DA YAD   +RRSVS +A T+ G VVSH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSF+APE SG+SIKVLE+ QGA AL++NPLSS R+KH+DVR+HFIR LFR+  IS + V + EQH D++TK LSR
Sbjct: 1123 SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVS--SKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDED---CEELLASLNKKF-PT--KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSR 1630          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE1.230e-10460.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE1.860e-10043.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE4.560e-10043.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.160e-9843.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.050e-9843.05Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K274_9PHAE2.250e-9758.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCA5_9PHAE3.260e-9661.15Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGF7_9PHAE4.160e-9660.53Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGN1_9PHAE2.670e-9564.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JN00_9PHAE3.360e-9242.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1049contigA-nodosum_M_contig1049:33721..36511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo132654
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size2791
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.83e-25
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size543
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866423.6826577-UTR-A-nodosum_M_contig1049:33720..352881680866423.6826577-UTR-A-nodosum_M_contig1049:33720..35288Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1049 33721..35288 +
1680866423.710135-UTR-A-nodosum_M_contig1049:35831..365111680866423.710135-UTR-A-nodosum_M_contig1049:35831..36511Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1049 35832..36511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866423.6921554-CDS-A-nodosum_M_contig1049:35288..358311680866423.6921554-CDS-A-nodosum_M_contig1049:35288..35831Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1049 35289..35831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1049.2.1prot_A-nodosum_M_contig1049.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1049 35289..35831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1049.2.1

>prot_A-nodosum_M_contig1049.2.1 ID=prot_A-nodosum_M_contig1049.2.1|Name=mRNA_A-nodosum_M_contig1049.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=181bp
MKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTL
EGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSG
ASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVA
SAEQHTDIITKVLSRANFQYHRKHLMNLLE*
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mRNA from alignment at A-nodosum_M_contig1049:33721..36511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1049.2.1 ID=mRNA_A-nodosum_M_contig1049.2.1|Name=mRNA_A-nodosum_M_contig1049.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2791bp|location=Sequence derived from alignment at A-nodosum_M_contig1049:33721..36511+ (Ascophyllum nodosum dioecious)
AGTCCGACCTCGACATGACGGAGATGTGGCCCCCGGTGCCACCCACATCG CGCGAGGCGCCAGCGGCAGAATCTGGAGCCGGGGCCGGGGGGAGGGGGTA CGGAAGGCAACCCCCCGACACTATCGGTCTCCCCCAGGAGGGCCGATTCG ATGGCATCAACGACAGCAGTAGCAGCAGCAGCAGCGATGACAGCCGCACC AGCAGTTACAGCAGCAATAGCAACGAAAGCGGGGACCTTCCCGCGCTTAT GGGGAGACCTTTGCAGGATCTGGAGGTTTTCGGTGAGCTCCTCGCACTGC AAAGCAGACGCACGAGGTCCCAGTCGCGGGGCTTGACCATGAGCGCACCC TGCGTGGATGCCCTGCTGACGTATCCCATGAGGACCGTGGAGGAGGAGGC CGCGGAAACCGAACGAGCTCACGATTCAATGCTGAAAGAGCGCCTGGAGA AGGAGCGTGAGTGGCTCGAGGAACTCGAGAGGCGCGGTGCGCTGCTGAAG CAACGCGGGGAGTAGCAGGACACGGACTACCCCCTCGTAATGGCGGTCGG ACAACAACCCGAGCTAAGTATTCCATCACCAATCGGGAGGAAACCCAGCA AAGTAGAGTCGCCCCCACACACTGTAGCAGGGGTAGAAGGGTCTGTTTAC CGAGAGGGTTGAAACAGTCCATGCAATCAGAGTTCGAGAGGCACATGAAA GCGGGAACCTTCTCGATGGTAGACAGGGTACCGGAGAGACGTAAGCCTGT AGACTCTAAAGGTGTTTCGACTATAAAACAGACAAGGAGGGAAAGATCGT CAAGTTTAAACCAAGGTTAGTTGTCAGGGGATCCACGCAGATCCGTAACG TGGATTACACCCACCCATCTTCCCCCTGTTCGTCATCGGCATCCAAAAAG CTGGTACTCGCAGTAGCAAACCAAGGGGGGTTGCCACTGTGCCATTTCGA CGTAGCACAGTCGTACATTCGAGCCTCACTAGACGAAAAGGTTTACATGA AACGCCCCGGCGGCTGTGGTGAAAACTCGAAAAAGACCGCCAAGTTGGAG AGGGCGGTTTACGGTCTGAAGCAGAGTGGGCGCAAATGGGGTCATTTGTG TGCGGATACTCTGATAGCGGATGGTTTTGAACAGTGTATGGCTGGCCCAT GCATTTTCCGCAAGATTATCGACGAGGTCATAGTCATGATCATTGGTGTC TACGATCGTTACTATTGTCTCTGAACAAAAGTTTCCAACCAACGGCTTAG GAGAGTACACCTGGTACGATGTGTATGGCATCGAGAGGAACGCAGAGGTA GGTACGATCAGACAGACTGTCGCATGACGCATACGTCGAGAGCTTGATTA AACGCTTTGATTTACACACCACTTCCGACATCCCTGCTTCCCCCGGTGCC GATCTAGGGACAAAACGGTATGATGAGTCGGGAGGGGGCTGGCCTGTGAG GGAAGCCGTCGGCAGCCTATTGTGGCTATCGACCATAACGCGACCGGACA TCAGGAATGCCGTGCGAGCTGTGGCGCGCTACGCCCATACCCCAACTGAG AGGCTCTGGCAAGCGATAATGAAGATATTGTGGTACCTTAATGGAACCAA AAGCTTTGTGATTACCTATTTGCGGGGATCGGGCCTGGGGCTAGAAATGT ATACGGATGCCGACTACGCCGACAAGGCTAATAATAGACGTTCGGTGTCC AGGATAGCAGTAACTTTGGAAGGTGCTGTTGTAAGCCACCCCAGTAAGAC ACAGCACGTCGTGTCGTTGTCGACCTCAGAGGCAGAGTACATTGCGGCTG GGGACGGGGTCAAGGAAGCTATGCTTGTGCGTACCGTCCTGTCGTTCATT GCGCCCGAGATGAGTGGGGCAAGCATTAAGGTCCTTGAGAACATTCAGGG GGCTAAAGCGCTGATTGAGAATCCCCTGAGCTCTGCTAGGAGCAAACACG TCGACGTGCGTTTCCACTTCATCCGTGATCTATTCAGAACACGGAGAATC AGTGAAGAGTGTGTAGCGTCGGCCGAGCAGCACACAGACATTATCACTAA GGTTCTGAGTAGGGCCAATTTTCAGTACCACCGTAAGCATTTGATGAACC TTTTGGAATAAAGTATGTAAGCACCAAGCAGGTTGTTTCAAGCAGTAAAT GTACCAGAACGTCGCCCGAGGCAGGTAGGCTTAGGACTAAGCTAGTGACA GGCAATGCATCTGACAAAGCCCCATGTACCAAGATGCGGTCCTCTGATAG CAAGTAGGCTTAGGGTACGTAACTCACGCGGGGCTTAGATTTGTTTCTTA GTTCTGCTTAATCCCCTTGCTTTGGAAGTGCGACCGTTGGAATTCTTTGT GATAGCGACGGTTCTTATTTGGGATTTTATGCTTGGGGCTTTTGATCGGC GGGTCCGGTTTTCCCCTTGCATCGTTTCGGGTTACTTGGGTATGATCCAG GGGCAGCTATATCCCTTAATTGAATGTTAGTCACTTGCGTGGAGAACCAG GGAGGGTGTCCGTACGAAGACGTAGGGTACGGTGATCTACCTGTAGTGAC GGTTTCATGTTTTTGGACCAATCATGTTGAGTCACGTGTGGGCGTGGGTA CGCCGCACTTTGGGAGACAGATGCACTGCTCTCACTCCCTTTTTCATCAG TGTTCTTTAATAAACGTGTTAAAACAAGACTCTCATGGCTCCTTTGCGTG AGGTTGTGCAGCCCTTGAATGTCGAAGCTATCAATATGCACCATGCATCC GCTTTTATTTTATGGGGTCTCTGAGCGTCTCTGCATCCTCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1049:33721..36511+

>mRNA_A-nodosum_M_contig1049.2.1 ID=mRNA_A-nodosum_M_contig1049.2.1|Name=mRNA_A-nodosum_M_contig1049.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig1049:33721..36511+ (Ascophyllum nodosum dioecious)
ATGAAGATATTGTGGTACCTTAATGGAACCAAAAGCTTTGTGATTACCTA
TTTGCGGGGATCGGGCCTGGGGCTAGAAATGTATACGGATGCCGACTACG
CCGACAAGGCTAATAATAGACGTTCGGTGTCCAGGATAGCAGTAACTTTG
GAAGGTGCTGTTGTAAGCCACCCCAGTAAGACACAGCACGTCGTGTCGTT
GTCGACCTCAGAGGCAGAGTACATTGCGGCTGGGGACGGGGTCAAGGAAG
CTATGCTTGTGCGTACCGTCCTGTCGTTCATTGCGCCCGAGATGAGTGGG
GCAAGCATTAAGGTCCTTGAGAACATTCAGGGGGCTAAAGCGCTGATTGA
GAATCCCCTGAGCTCTGCTAGGAGCAAACACGTCGACGTGCGTTTCCACT
TCATCCGTGATCTATTCAGAACACGGAGAATCAGTGAAGAGTGTGTAGCG
TCGGCCGAGCAGCACACAGACATTATCACTAAGGTTCTGAGTAGGGCCAA
TTTTCAGTACCACCGTAAGCATTTGATGAACCTTTTGGAATAA
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