mRNA_A-nodosum_M_contig1049.2.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 345 bits (885), Expect = 1.230e-104 Identity = 182/301 (60.47%), Postives = 231/301 (76.74%), Query Frame = 3
Query: 1203 RSLLLSLNKSFQPTA*--ESTPGTMCMASRGTQR*VRSDRLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMN 2099
+ LL SLNK+F PT E C R + + R+S AY++S++ RFD+ +TS IPASPG D+G KR DESGG WPVREA+GS++W+ST +RPDI AVRAVAR+AH P ER W+AI+KIL YL T+ ITY RGSGLGL +Y DA YAD A +RRSVS +A T+ G V+SH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSFIAPE SG+SI+VLE+ QGA AL++NPLSSARSKH+DVR+HFIR LFR+ IS + V+++EQH D++TK LS+++ QYHR+ LMN
Sbjct: 210 KELLASLNKAF-PTKDLGECVWFDGCAVERDLE--AGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 342 bits (878), Expect = 1.860e-100 Identity = 228/524 (43.51%), Postives = 300/524 (57.25%), Query Frame = 3
Query: 576 SPIGRKPSKVESPPHTVAGVEGSVYREG*NSPCNQSSRGT*KREP----SRW*TGYRRDVSL*TLKVFRL*NRQGGKDRQV*TKVSCQGIHADP*RGLHPPIFPLFVIGIQKAGTRSSKPRGVATVPFRRSTVVHSSLTRRKG-----LHETPRRLW*KLEKDRQVGEGGLRSEAE--WAQMGSFVCGYSDSGWF*TVYGWPMHFPQDYRRGHSHDHWCLRSLLLSLNKSFQPTA*ESTPGTMCMASRGTQR*VRSD--RLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
SPIG++PS VESPP TVAGV SVYREG + G RW T ++ + TLK R+ +G Q+ + +S P I + + +K + A V L G + + R ++ + RQ G + E + Q + C + V ++ G D LL SLNK F PT ++ +R V + R+S AY++S+++RFD+ +TS IPA+PGADLG KR D+ GG WPVREAVGS++W+ST +RPD+ AVRAVAR+AH P +R W AI KIL YL GT+ ITY RGSGLGL +Y DA YAD +RRSVSR+A T+ G VVSH SK + +VSLS++EAEYIAAG+GVKEA+ VR VLSF+APE G+SI+VLE+ QGA AL++NPLSS KH+DVRFHFIR LFR+ S + V + EQH DI+T+ LSRA+ QYHR+ LMNL E
Sbjct: 330 SPIGKRPSDVESPPMTVAGVNKSVYREGWEQAMREEFEGHLGHGDVFIRRRWKTN--KEGKIDTLKARRV--ARGFS--QITSIISIPSSSPCP---SSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED---CEELLASLNKKF-PT--KNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYAD-TEDRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQALSRASLQYHRRKLMNLPE 837
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 350 bits (897), Expect = 4.560e-100 Identity = 229/532 (43.05%), Postives = 302/532 (56.77%), Query Frame = 3
Query: 576 SPIGRKPSKVESPPHTVAGVEGSVYREG*NSPCNQSSRGT*KREPSRW*TGY---RRDVSL*TLKVFRL*NRQGGKDRQV*TKVSCQGIHADP*RGLHPPIFPLFVIGIQKAGTRSSKPRGVATVPFR-RSTVVHSSLTRRKGLH-------------ETPRRLW*KLEKDRQVGEGGLRSEAE--WAQMGSFVCGYSDSGWF*TVYGWPMHFPQDYRRGHSHDHWCLRSLLLSLNKSFQPTA*ESTPGTMCMASRGTQR*VRSD--RLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
SPIG++PS VE+PP TVAGV SVYREG + G + G RR VS + F + GK ++ +G P P K + +G+ + + H++L L + R ++ + RQ G + E + Q + C + V ++ G D LL SLNK F PT ++ +R V + R+S AY++S+++RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+ AVRAVAR+AH P +R W AI KIL YL GT+ ITY RGSGLGL +Y DA YAD +RRSVS +A T+ G VVSH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSF+APE SG+SIKVLE+ QGA AL++NPLSS R+KH+DVR+HFIR LFR+ IS + V + EQH D++TK LSR + QYHR+ LMNL E
Sbjct: 724 SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVS--SKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED---CEELLASLNKKF-PT--KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1246
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 350 bits (897), Expect = 1.160e-98 Identity = 229/532 (43.05%), Postives = 302/532 (56.77%), Query Frame = 3
Query: 576 SPIGRKPSKVESPPHTVAGVEGSVYREG*NSPCNQSSRGT*KREPSRW*TGY---RRDVSL*TLKVFRL*NRQGGKDRQV*TKVSCQGIHADP*RGLHPPIFPLFVIGIQKAGTRSSKPRGVATVPFR-RSTVVHSSLTRRKGLH-------------ETPRRLW*KLEKDRQVGEGGLRSEAE--WAQMGSFVCGYSDSGWF*TVYGWPMHFPQDYRRGHSHDHWCLRSLLLSLNKSFQPTA*ESTPGTMCMASRGTQR*VRSD--RLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
SPIG++PS VE+PP TVAGV SVYREG + G + G RR VS + F + GK ++ +G P P K + +G+ + + H++L L + R ++ + RQ G + E + Q + C + V ++ G D LL SLNK F PT ++ +R V + R+S AY++S+++RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+ AVRAVAR+AH P +R W AI KIL YL GT+ ITY RGSGLGL +Y DA YAD +RRSVS +A T+ G VVSH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSF+APE SG+SIKVLE+ QGA AL++NPLSS R+KH+DVR+HFIR LFR+ IS + V + EQH D++TK LSR + QYHR+ LMNL E
Sbjct: 1103 SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVS--SKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED---CEELLASLNKKF-PT--KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1625
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 350 bits (897), Expect = 2.050e-98 Identity = 229/532 (43.05%), Postives = 302/532 (56.77%), Query Frame = 3
Query: 576 SPIGRKPSKVESPPHTVAGVEGSVYREG*NSPCNQSSRGT*KREPSRW*TGY---RRDVSL*TLKVFRL*NRQGGKDRQV*TKVSCQGIHADP*RGLHPPIFPLFVIGIQKAGTRSSKPRGVATVPFR-RSTVVHSSLTRRKGLH-------------ETPRRLW*KLEKDRQVGEGGLRSEAE--WAQMGSFVCGYSDSGWF*TVYGWPMHFPQDYRRGHSHDHWCLRSLLLSLNKSFQPTA*ESTPGTMCMASRGTQR*VRSD--RLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
SPIG++PS VE+PP TVAGV SVYREG + G + G RR VS + F + GK ++ +G P P K + +G+ + + H++L L + R ++ + RQ G + E + Q + C + V ++ G D LL SLNK F PT ++ +R V + R+S AY++S+++RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+ AVRAVAR+AH P +R W AI KIL YL GT+ ITY RGSGLGL +Y DA YAD +RRSVS +A T+ G VVSH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSF+APE SG+SIKVLE+ QGA AL++NPLSS R+KH+DVR+HFIR LFR+ IS + V + EQH D++TK LSR + QYHR+ LMNL E
Sbjct: 1266 SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVS--SKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED---CEELLASLNKKF-PT--KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1788
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE) HSP 1 Score: 332 bits (851), Expect = 2.250e-97 Identity = 176/302 (58.28%), Postives = 221/302 (73.18%), Query Frame = 3
Query: 1209 LLLSLNKSFQPTA*ESTPGTMCMASRGTQR*VRSD--RLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
LL SLNK F PT ++ +R V + R+S AY++S++ RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+ AVRAVAR+AH P +R W AI KIL YL GT+ ITY RGSGLGL +Y DA YAD +RRSVS +A T+ G VVSH SKTQ +VSLS+ EAEYIAAG+GVKEA+ VR VL F+APE G+SI+VLE+ QGA AL++NPLSS R+ H+DVRFHFIR LF + IS + V + EQH D++TK L +A+ QYHR+ LMNL E
Sbjct: 460 LLASLNKKF-PT--KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIRGLFGSGDISVKFVPTTEQHADLLTKALRKASLQYHRRKLMNLPE 757
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5KCA5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA5_9PHAE) HSP 1 Score: 312 bits (800), Expect = 3.260e-96 Identity = 159/260 (61.15%), Postives = 201/260 (77.31%), Query Frame = 3
Query: 1344 LIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPL-----SSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
+++RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+ AVRAVAR+AH P +R W AI KIL YL GT+ ITY RGSGLGL +Y DA YAD +RRSVS +A T G VVSH SK Q +VSLS++EAE+IAAG+GVKEA+ +R VLSF+APE G+SI+VLE+ QG AL++NPL SS R+KH+DVRFHFIR LFR+ I+ + V + EQH D++T+ LSRA+ QYHR+ LMNL E
Sbjct: 1 MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTGGGTVVSHGSKKQSIVSLSSTEAEHIAAGEGVKEALFMRAVLSFVAPETRGSSIQVLEDNQGGMALVQNPLVQNPLSSGRTKHIDVRFHFIRGLFRSGDITVKFVPTTEQHADLLTQALSRASLQYHRRKLMNLPE 259
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE) HSP 1 Score: 343 bits (880), Expect = 4.160e-96 Identity = 184/304 (60.53%), Postives = 233/304 (76.64%), Query Frame = 3
Query: 1203 RSLLLSLNKSFQPTA*--ESTPGTMCMASRGTQR*VRSDRLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
+ LL SLNK+F PT E C R + + R+S AY++ ++ RFD+ +TS IPASPG D+G KR DESGG WPVREA+GS++W+ST +RPDI AVRAVAR+AH P ER W+AI+KIL YL T+ ITY RGSGLGLE+Y DA YAD A +RRSVS +A T+ G V+SH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSFIAPE SG+SI+VLE+ QGA AL++NPLSSARSKH+DVR+HFIR LFR+ IS + V+++EQH D++TK LS+++ QYHR+ LMNL E
Sbjct: 1599 KELLASLNKAF-PTKDLGECVWFDGCAVERDLEAGMTL-RISQTAYID-IVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 1898
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE) HSP 1 Score: 329 bits (843), Expect = 2.670e-95 Identity = 164/255 (64.31%), Postives = 204/255 (80.00%), Query Frame = 3
Query: 1344 LIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSRANFQYHRKHLMNLLE 2108
+++RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+ AVRAVAR+AH P +R W AI KIL YL GT+ ITY RGSGLGL +Y DA YAD +RRSVS +A T+ G VVSH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSF+APE SG+SI+VLE+ QGA AL++NPLSS R+KH+DVR+HFIR LFR+ IS + V + EQH D++TK LSR + QYHR+ LMNL E
Sbjct: 601 MVERFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 854
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 331 bits (849), Expect = 3.360e-92 Identity = 220/517 (42.55%), Postives = 291/517 (56.29%), Query Frame = 3
Query: 576 SPIGRKPSKVESPPHTVAGVEGSVYREG*NSPCNQSSRGT*KREPSRW*TGY---RRDVSL*TLKVFRL*NRQGGKDRQV*TKVSCQGIHADP*RGLHPPIFPLFVIGIQKAGTRSSKPRGVATVPFR-RSTVVHSSLTRRKGLH-------------ETPRRLW*KLEKDRQVGEGGLRSEAE--WAQMGSFVCGYSDSGWF*TVYGWPMHFPQDYRRGHSHDHWCLRSLLLSLNKSFQPTA*ESTPGTMCMASRGTQR*VRSD--RLSHDAYVESLIKRFDLHTTSDIPASPGADLGTKRYDESGGGWPVREAVGSLLWLSTITRPDIRNAVRAVARYAHTPTERLWQAIMKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLEGAVVSHPSKTQHVVSLSTSEAEYIAAGDGVKEAMLVRTVLSFIAPEMSGASIKVLENIQGAKALIENPLSSARSKHVDVRFHFIRDLFRTRRISEECVASAEQHTDIITKVLSR 2063
SPIG++PS VE+PP TVAGV SVYREG + G + G RR VS + F + GK ++ +G P P K + +G+ + + H++L L + R ++ + RQ G + E + Q + C + V ++ G D LL SLNK F PT ++ +R V + R+S AY++S+++RFD+ +TS IPA+PGADLG KR DE GG WPVREA+GS++W+ST +RPD+ AVRAVAR+AH P +R W AI KIL YL GT+ ITY RGSGLGL +Y DA YAD +RRSVS +A T+ G VVSH SKTQ +VSLS++EAEYIAAG+GVKEA+ VR VLSF+APE SG+SIKVLE+ QGA AL++NPLSS R+KH+DVR+HFIR LFR+ IS + V + EQH D++TK LSR
Sbjct: 1123 SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVS--SKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDED---CEELLASLNKKF-PT--KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSR 1630 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1049.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1049.2.1 >prot_A-nodosum_M_contig1049.2.1 ID=prot_A-nodosum_M_contig1049.2.1|Name=mRNA_A-nodosum_M_contig1049.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=181bp MKILWYLNGTKSFVITYLRGSGLGLEMYTDADYADKANNRRSVSRIAVTLback to top mRNA from alignment at A-nodosum_M_contig1049:33721..36511+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1049.2.1 ID=mRNA_A-nodosum_M_contig1049.2.1|Name=mRNA_A-nodosum_M_contig1049.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2791bp|location=Sequence derived from alignment at A-nodosum_M_contig1049:33721..36511+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1049:33721..36511+ >mRNA_A-nodosum_M_contig1049.2.1 ID=mRNA_A-nodosum_M_contig1049.2.1|Name=mRNA_A-nodosum_M_contig1049.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig1049:33721..36511+ (Ascophyllum nodosum dioecious)back to top |