mRNA_A-nodosum_M_contig1047.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1047.9.1
Unique NamemRNA_A-nodosum_M_contig1047.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1047.9.1 vs. uniprot
Match: D7FLT8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT8_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.850e-25
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 QEWMGKREITEKTFTYTKSISFGLVMAIVVFPMVLYGNIKSGMETKDAKLGRKREYL 171
            +EWMGKREI+EKTFT+T  +S GL+MAIVVFP+V+YGNIK+GMETKDAK GRKREY 
Sbjct:   42 EEWMGKREISEKTFTFTPKVSLGLLMAIVVFPVVVYGNIKAGMETKDAKEGRKREYF 98
[Close]
BLAST of mRNA_A-nodosum_M_contig1047.9.1 vs. uniprot
Match: A0A7S3UZX4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZX4_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 9.180e-11
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 QEWMGKREITEKTFTYTKSISFGLVMAIVVFPMVLYGNIKSGMETKDAKLGRKREYL 171
            +EW GKREITE+TFTYT   +  L+M + VFP  +Y   K  +E +DA  G++REY+
Sbjct:   48 EEWNGKREITEQTFTYTGQTTRSLLMWMGVFPAFVYVMTKGELEKRDASKGKRREYM 104
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1047.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLT8_ECTSI2.850e-2577.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3UZX4_HETAK9.180e-1149.12Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1047contigA-nodosum_M_contig1047:49247..49420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size174
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001290.1
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866422.283115-UTR-A-nodosum_M_contig1047:49246..492551680866422.283115-UTR-A-nodosum_M_contig1047:49246..49255Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 49247..49255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866422.3060176-CDS-A-nodosum_M_contig1047:49255..494201680866422.3060176-CDS-A-nodosum_M_contig1047:49255..49420Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 49256..49420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1047.9.1prot_A-nodosum_M_contig1047.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1047 49256..49420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1047.9.1

>prot_A-nodosum_M_contig1047.9.1 ID=prot_A-nodosum_M_contig1047.9.1|Name=mRNA_A-nodosum_M_contig1047.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=55bp
MGKREITEKTFTYTKSISFGLVMAIVVFPMVLYGNIKSGMETKDAKLGRK
REYL*
back to top

mRNA from alignment at A-nodosum_M_contig1047:49247..49420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1047.9.1 ID=mRNA_A-nodosum_M_contig1047.9.1|Name=mRNA_A-nodosum_M_contig1047.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:49247..49420+ (Ascophyllum nodosum dioecious)
CAGGAGTGGATGGGCAAGCGGGAGATAACGGAGAAGACCTTCACCTACAC
CAAGAGCATCTCGTTTGGCCTCGTCATGGCCATTGTGGTGTTTCCTATGG
TCCTATACGGCAACATCAAGTCGGGGATGGAAACCAAGGATGCCAAGTTG
GGTCGGAAACGGGAGTACTTGTAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1047:49247..49420+

>mRNA_A-nodosum_M_contig1047.9.1 ID=mRNA_A-nodosum_M_contig1047.9.1|Name=mRNA_A-nodosum_M_contig1047.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=165bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:49247..49420+ (Ascophyllum nodosum dioecious)
ATGGGCAAGCGGGAGATAACGGAGAAGACCTTCACCTACACCAAGAGCAT
CTCGTTTGGCCTCGTCATGGCCATTGTGGTGTTTCCTATGGTCCTATACG
GCAACATCAAGTCGGGGATGGAAACCAAGGATGCCAAGTTGGGTCGGAAA
CGGGAGTACTTGTAG
back to top