mRNA_A-nodosum_M_contig1047.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1047.10.1
Unique NamemRNA_A-nodosum_M_contig1047.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1047.10.1 vs. uniprot
Match: D7FLT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT7_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 5.830e-54
Identity = 107/180 (59.44%), Postives = 127/180 (70.56%), Query Frame = 1 
Query:    1 MRLLAAAVALVVPFLTYGFTP--TTPSLQRAPGSSLPLRCPSCRFNTIMNNLDSTHAKIKVAGTVLLGGALLATGLVDSAGVARADLSISPRCITGEGANCDDLAEGNELIKSLQAKSVLSKDKFFKETLEKYNEHNFKDYFRAENKHMVRHKDGRYEILTNADYDEAEKAGKVKKDVFL 534
            MRL     ALV P     F    T PS   +P S+  LRC S R    M  L +     +  G VL+GGAL+ TG +D   VARAD+SISPRCITGEGA C+DLAEGNELIKSLQAKS +SKD++F+ETL+ YN HNFKDYF+AE+KHMV+H  G+YEILTNA+Y  AEKAGKV+ DVFL
Sbjct:    1 MRLHVILAALVGPSCVESFAVLCTAPSSSTSPVSTS-LRCRSTRT---MMTLPTAGDLNRALGAVLVGGALI-TGAMD---VARADVSISPRCITGEGAQCEDLAEGNELIKSLQAKSAISKDRYFQETLDTYNVHNFKDYFKAESKHMVKHNTGKYEILTNAEYAAAEKAGKVRNDVFL 172
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BLAST of mRNA_A-nodosum_M_contig1047.10.1 vs. uniprot
Match: A0A1Z5KK89_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KK89_FISSO)

HSP 1 Score: 65.5 bits (158), Expect = 3.210e-10
Identity = 38/107 (35.51%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:  208 LATGLVDSAGVARADLSISPRCITGEGANCDDLAEGNELIKSLQAKSVLSKDKFFKETLEKYNEHNFKDYFRAENKHMVRHKDGRYEILTNADYDEAEKAGKVKKDV 528
            L    V S+  A A +S S  C  G G  C DL+EGNELI+SLQ KS ++++++ +E L+ Y   N+ D+F    K +V+  DG +  L +++ ++ ++ GKV  ++
Sbjct:   31 LVGAFVASSSPAEAVIS-SKYCSAGVGEGCGDLSEGNELIRSLQEKSAINRERYQQEALDAYYMKNYPDFFGVVGKTLVKKPDGTFVALADSEVEKLKQEGKVTFEI 136
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BLAST of mRNA_A-nodosum_M_contig1047.10.1 vs. uniprot
Match: A0A7S0CI77_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CI77_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.930e-9
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:  205 LLATGLVDSAGVARADLSISPRCITGEGANCDDLAEGNELIKSLQAKSVLSKDKFFKETLEKYNEHNFKDYFRAENKHMVRHKDGRYEILTNADYDEAEKAGKV 516
            L+A     SA  + A +  S  C  GEG+ CD++A+GN+ I+SLQ KS   K+ + KE+L+ Y   N+ D F++ ++ +V+  DG Y   T+ +  +  K GK+
Sbjct:   40 LVAASSCLSASNSNAAILQSGGCAYGEGSACDEIADGNKFIQSLQQKSAARKEIYAKESLDAYYMKNYPDMFKSMDRVLVKKPDGSYVTFTSEEASDLMKDGKI 143
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BLAST of mRNA_A-nodosum_M_contig1047.10.1 vs. uniprot
Match: A0A7S0JL08_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JL08_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 1.210e-8
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:  268 RCITGEGANCDDLAEGNELIKSLQAKSVLSKDKFFKETLEK-YNEHNFKDYFRAENKHMVRHKDGRYEILTNADYDEAEKAGKVK 519
            RC  G+G  CD LA+GNEL+  LQA+S L+K+K  ++  +K   +  + DYF A +K++V+  DG+Y++L  A+Y      GK+K
Sbjct:   80 RCEGGQGDACDRLADGNELVLQLQARSRLNKEKNERDLYDKTVRQLGYTDYFDALDKNLVQLPDGKYKLLDAAEYGRLRGEGKIK 164
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BLAST of mRNA_A-nodosum_M_contig1047.10.1 vs. uniprot
Match: A0A7S2MFL5_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MFL5_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 7.220e-6
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 1 
Query:  193 LGGALLATGLV---DSAGVARADLSISP-------------------RCITGEGANCDDLAEGNELIKSLQAKSVLSKDKFFKETLEK-YNEHNFKDYFRAENKHMVRHKDGRYEILTNADYDEAEKAGKVK 519
            LG AL A G+    ++  +A A L+ SP                   RC  GEG  C  LA+GNEL+  LQA+S  +K+K     ++K   +  + D+F A +K++V+  +G+Y  L   +Y    K GK+K
Sbjct:   22 LGAALQADGVCTRRNAISIATASLAYSPLSPARASTKETIFGIGNAERCENGEGEACARLADGNELVAKLQARSAANKEKNAAALIDKTVMQLGYSDFFDALDKNLVKLPNGKYATLDADEYSRLRKEGKLK 153
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1047.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FLT7_ECTSI5.830e-5459.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5KK89_FISSO3.210e-1035.51Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S0CI77_9STRA2.930e-935.58Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S0JL08_9EUKA1.210e-841.18Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2MFL5_9EUKA7.220e-632.58Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1047contigA-nodosum_M_contig1047:50614..55395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLT7
Model size540
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue9.55e-55
EggNOG OGs2CACH@1|root,2SH2H@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_001300.1
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866422.3368745-CDS-A-nodosum_M_contig1047:50613..507001680866422.3368745-CDS-A-nodosum_M_contig1047:50613..50700Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 50614..50700 -
1680866422.3530688-CDS-A-nodosum_M_contig1047:51318..513591680866422.3530688-CDS-A-nodosum_M_contig1047:51318..51359Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 51319..51359 -
1680866422.3617084-CDS-A-nodosum_M_contig1047:51758..518991680866422.3617084-CDS-A-nodosum_M_contig1047:51758..51899Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 51759..51899 -
1680866422.371372-CDS-A-nodosum_M_contig1047:55124..553951680866422.371372-CDS-A-nodosum_M_contig1047:55124..55395Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 55125..55395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1047.10.1prot_A-nodosum_M_contig1047.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1047 50614..55395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1047.10.1

>prot_A-nodosum_M_contig1047.10.1 ID=prot_A-nodosum_M_contig1047.10.1|Name=mRNA_A-nodosum_M_contig1047.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=180bp
MRLLAAAVALVVPFLTYGFTPTTPSLQRAPGSSLPLRCPSCRFNTIMNNL
DSTHAKIKVAGTVLLGGALLATGLVDSAGVARADLSISPRCITGEGANCD
DLAEGNELIKSLQAKSVLSKDKFFKETLEKYNEHNFKDYFRAENKHMVRH
KDGRYEILTNADYDEAEKAGKVKKDVFLE*
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mRNA from alignment at A-nodosum_M_contig1047:50614..55395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1047.10.1 ID=mRNA_A-nodosum_M_contig1047.10.1|Name=mRNA_A-nodosum_M_contig1047.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4782bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:50614..55395- (Ascophyllum nodosum dioecious)
ATGCGTCTGCTTGCTGCCGCAGTTGCCTTAGTGGTACCTTTTCTCACATA
TGGCTTCACGCCGACGACACCTTCTTTGCAGAGAGCACCAGGAAGCAGTT
TGCCCTTACGGTGTCCTTCATGCCGCTTTAATACTATCATGAACAACTTG
GATTCAACGCATGCGAAGATCAAAGTTGCTGGCACGGTGCTGCTTGGAGG
CGCGCTGCTGGCAACGGGACTCGTTGATAGCGCTGGCGTTGCGAGGGCGG
ACTTATCCATCAGTCCCAGATGTGAGCAAAGGTGCATGGACAAGTCATGG
AAGGTTTGCTTGCGTCGTTAAAGGAAGATATGAACGCATCTAGCCTAGAC
CTTCTGAGCATCCCTCAATCAGGGGGAACTGCCCGCAGGTCGAATACCTA
CTGCAAGTATGAAATAACACAACCGGTGAGAGAGGTTCGAGCACGAGATG
TTTCGTTGGGGGAGTTAGAGCCACACTCTGTACAGTACCTACTGCTGTAC
ATATGTCACTTCCTGCCGATGCGGCCTGCCATCTTGCTAAAGACAGTAAC
GATTTCCATCCCGCATGCGGTTCTAGAGAATCCCCGTGAACATAATACTA
GTCACTACACGGTTAGTAAATGCCGCCTCTGTTATTGCCGGTCGCCGGTA
GCTCAGAGGTACCTCGTAACCCTCTGACACGTTGGGACGTGAGTTCGATC
CCAGCAAACGGGATTTTTCTCACTAAAAAACTAAAAAACTAAAAAACTAA
AAAAAAAAATGCCCAACGGGTTGAGAACGATTAAATCGTTAGTACACAAA
ATTCGACTTCACGGTGGACGAGGGAAAGGAACGGCTGAATCCTTCTCGCG
AGAAAAATGAAGGCACGCACCGCAGAAAGAAGGTGGATGAGAAATCCTGT
GTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCCAACGAACTTGACG
TCCAGAATGAATGGGAAGAAAACACAGACACACACACACATTATTACGCA
CTACGTACGCGATGCAAGTTCTGCACTCCTACTGTACGTATGCCTCGTCA
GCAGATATAATGGTTGACTTTTGTCCCTACGAGCAGCGGTGCTATCTTAC
CACTGGAGATAATAGGAGTGTTTTATTTTTGTGGGCTACATACGCTGCTC
AAGCTTTCTGTGTCCTATTCAGCAGACCAAAAGCGAGATTGACCACGATG
TACAGGTAGATGTCCTCAAGCTATCTACCAAAATATCCTGGACGTGGGGA
ATGCGAGAAATCACAAACAGCAACAACTGACCTCTCGTGACCCTCTATGA
TACGGAAATGAAGAAAAAAATCAACTAGAAGAGATTCGACCTCACATATT
CCGGGTAACACAGGTGCTGTATTGCAGTCATTCTTTCGACGCAGACCGAC
GGGGGAGTACTATTGATATGTAGCGTGTAGGACCCCAGACCTTAGACGTG
TACTGGAGTATGTAGATCTTCGCAACACGAAAATTCCTGGGTGTCTTCCT
GAGAATCGTTTTTTTCGTCCCGCAGCGTTAATCCCACCATAGGTCTGCGA
GTGAAATCGCCTCCCAAGAAAGCGTGTCAAGCCCTCCTCCTCGTGTTCAG
CTGCGGTCTTCTGCCGCCGCGGCCGTTGCTATTGTTTCCGGTTCTCGATT
TTTCATAGCGTTCTCGTTACGACCGAGCCAACGTGCGACGCATGTGTCGT
GTCATCACGCTCTCAATCCTAAACCTCTGGCTTCACAACTATGATACCAA
TCAACTACCAATCCCGACTATGACCGCAAAGAGGTATTAAGACCGGACTC
AGTCACTCAGTCTCTGAGGCACTCCTCTACGCACGTGGACAGTGATCCGA
AAAGTAGATCCAGATTTGCTCTATTACAGTCCATAGTTCTGTGGATAAAA
GGAGGTATATTCCACAGAGTAGGCGGCAACAGCTTTGTGGTTGCCAATCC
CGCTTGTTTAAGGAAAAATCAGAACGCACCTAGTTCTTGTTTCTTGTTTA
TCTCACATTATGAACTGATCCGCCACGAACCTAATAGTCTAGTGCTACAG
CCGCGGCCACAATATAAGCGGAGCCAAACCAAATCAAACCGGGAACACGG
TCAGAGAAAAAAAGCGGGGAAAACAGACAGAAGGGAACGGACAAGAAAGT
AGCCAGCAAAGAACATCGTCGCCAGGAAGGGACGCAGAAGAAACAAAAAG
AAAATAGAGAAAGAAAAATGAAACCAAAGCCTAATTTTCCCGGCCGCCTT
CCCCCCTGAAAATTTGATACTGTATCGCGAGATAAGAGATGATTCGGATG
TCCCGTCCCGCCCCTCATCAGCCCGCTCATCCTCCACACCCAGGCTGAAT
CTGTTAATATCAATAGTGCTTATCCTTACCCATGGGTTTCTCTCCTTTCT
CGTGCTTTCCGCGATATCATAGTGATAGATAACGGTGCCCATCTATACCT
TCAACCGCTATCGGGCCAGTCCCGAGTTTATCAGGTCGCGCAGTTGCGTC
CCGATGCCGTTCTCACTGCCGAGAGTCCGCCGGCACACGACCAGCAGTCC
CCATCGTCCCTAGAGTGACGTTGGGGTGCTGCCTGTTCAGATAAGCCCTT
GGACCAATCAATGACATCCCCTTGTCCTACAGCCACCACTTGTACTACTG
TATTGCTGTTACTGTATATTAATACTTCCTCGTCCAGTGGGCATGTGAGG
CGGTCAGATTTCAGTATATTGCAGCATGCGTGGTCAAGAAAAAAGGACAT
ACACGGTACGGAACTCCGCTCAATTTTTTTTTTTTTTTTTTTACTCCGAC
GATCGACACTCTGCTCCTTATGATTACTGTCATATCCTCTGAGTTCCCCC
CCCAAAAAAACTTTGGCCGAAATGGGCATACAAACGTTGAGCTATCCCAG
GGGGATTTTTATCTATCTATTTTTTTAAAGATCTCCCCCCCTACCTTTGA
GTTAACCCCGGGGGGATCTTTTTTCGCAAAAAAAACGCCCGCCCCCGGGG
GGAACACAGAATAATCGGCAATATGTTTGCTGTTGTCGTTATGTTGGTAC
TCTCGTCCCCGTTTGCTCTTCCCGTTGCTGTCGGAGGAGGTGTCATCGCA
GCTAACCGAGGCAGGGCGTAAGCTCCCCCAACTGTTGTCCTTGTGCCTCC
TAAATCGTTTCTCGTAGATGCTGTTTAGACCCGACATCGTGGGAGCTGCA
GTGTGTGTGAGGTGTGTGTGTCGTGCTTTTCGGAAGATCCCCCCGGAGAC
TTTTCCCCCCGGGGTGTTTTTTATGTATTTATTTTAAGATCCCCCCCCCT
CCCCTACCTTTGAGTTACCCCCGGGGTGATCGTTTTCCGCAAAAAATATA
CATCCCCCCGCGGGGGGAACTCAGAGGATATTACGGTATGTAGTACAAGA
GATTACATTACATTACATTATATAACATAACATGCAAGCAGTACGGTGCT
GACAAAGGGCCCTTGGCGTTGGGATGACGTTCACGGCCACGTGCAGGTAT
CACAGGCGAGGGCGCGAACTGTGATGACTTGGCAGAGGGGAACGAACTTA
TCAAGAGCCTTCAGGCCAAGTCGGTTCTTTCGAAGGACAAGTTCTTCAAG
GAAACGCTCGAAAAGTACAACGAGCACAACTTTAAAGGTGTGCTACAAGT
GCTACAACTGCAGGCTCTCCTCGACCCAATCTGTTGGTACCTATTACTAG
TATTCCAAAGACTATGAATGGTACATATTAGGGGTTATCGGCCTGCTGAC
TCACGCAACTGTACTGGACGCGTCCTGGTTTCCTTCGTATTCCAATGCGC
GTTCGCGTGTGCTTTATGTAGACCCATCTATATCCATTTTCGCCCTTATC
TATATCCATTTTCGCTGAAGCTGAAAGGTCGGGAGCCAATTATTAATTAC
CCGACTCGGTAACGGCAATCAGAGTTGAAAGCAGGTGTGATGGAACACAT
CTGGTAACGGCAATTACTGTACGTGTGATGGAACACATCTGGTAATGAAA
TCGGCCGCCCCCACGATGCGCTTACATTTTGCGCAGATTATTTTCGCGCA
GAGAACAAGCACATGGTCAGGCACAAGGTGAGCTGGATGACTCCATCGCC
TTGTCATCGCAGGTTCTTTGTCGATAATGCTGCCATCCGCATGACTGGCT
ACGATGGAGCACTTCTCTGTTCGGGATTCGCATGTACATGTGCCTTTAAT
CTGCCACAAGTATTGAACCTACTTTCACAAGCTTTCTGAGGGTCTCTGCG
GCAGCAAATACGAGATGGCAGCCAAATACCACGTTGTTGGCCGACCAGGG
GCTGAACTTGTGCAGGGCACGTACCGTGATACGATTCCCATCAAACACAA
AAACCACTGTACTGAGAGAAAACACCTTTATGAAGATGAATTGAGGTCCC
GTCTCAATTTTCGGGTTTTTGTTAAGATTTGGACGTCAAAAACTCCTGTG
TCGCATCGGTCGGCTACTGCACAATACTCGTTTGTACCCTACATTAGACA
TTAGAGGACGGTACAAAGTACGTCAATCGCGATTCCTACTGCCTACTTGT
AAAAGGCGTTTTTGAAACAGCTAAAAATTATACAATTATGTCCTTACACC
TTTCCCAGCAGAGTATTACTAATATTTATCCTGATTGTTGCCCACTGCCG
TAAAACCCCTTTTTCACTGCTGGCGGTTATGCTCGTTTCTCCCAGGACGG
ACGGTACGAGATTCTCACGAATGCGGACTATGACGAAGCAGAGAAGGCTG
GGAAGGTCAAGAAAGACGTTTTCTTGGAATGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1047:50614..55395-

>mRNA_A-nodosum_M_contig1047.10.1 ID=mRNA_A-nodosum_M_contig1047.10.1|Name=mRNA_A-nodosum_M_contig1047.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:50614..55395- (Ascophyllum nodosum dioecious)
ATGCGTCTGCTTGCTGCCGCAGTTGCCTTAGTGGTACCTTTTCTCACATA
TGGCTTCACGCCGACGACACCTTCTTTGCAGAGAGCACCAGGAAGCAGTT
TGCCCTTACGGTGTCCTTCATGCCGCTTTAATACTATCATGAACAACTTG
GATTCAACGCATGCGAAGATCAAAGTTGCTGGCACGGTGCTGCTTGGAGG
CGCGCTGCTGGCAACGGGACTCGTTGATAGCGCTGGCGTTGCGAGGGCGG
ACTTATCCATCAGTCCCAGATGTATCACAGGCGAGGGCGCGAACTGTGAT
GACTTGGCAGAGGGGAACGAACTTATCAAGAGCCTTCAGGCCAAGTCGGT
TCTTTCGAAGGACAAGTTCTTCAAGGAAACGCTCGAAAAGTACAACGAGC
ACAACTTTAAAGATTATTTTCGCGCAGAGAACAAGCACATGGTCAGGCAC
AAGGACGGACGGTACGAGATTCTCACGAATGCGGACTATGACGAAGCAGA
GAAGGCTGGGAAGGTCAAGAAAGACGTTTTCTTGGAATGA
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