mRNA_A-nodosum_M_contig1046.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1046.8.1
Unique NamemRNA_A-nodosum_M_contig1046.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1046.8.1 vs. uniprot
Match: D8LRV0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRV0_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 4.200e-12
Identity = 47/101 (46.53%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:   34 AMFPPGCFACHVDCATGCA-DDQPYNHP-YALTTNYEADENAVDENRPSHPDSRSTTLHTK---------------------EASAVMRFVLWVLDVKTDT 267
            A   PGCFACHVDCATGCA DDQP++HP YA       DE   DE      + RST LH+                      E S++MRFVLW L+VKTDT
Sbjct:    3 ATTVPGCFACHVDCATGCAADDQPFDHPDYADYKIPSFDEKDADE-----AELRSTRLHSNNSKEEPQDSDKGMEISTDEPAEGSSLMRFVLWALNVKTDT 98
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1046.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRV0_ECTSI4.200e-1246.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1046contigA-nodosum_M_contig1046:88696..93289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1688
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866420.882227-UTR-A-nodosum_M_contig1046:88695..901071680866420.882227-UTR-A-nodosum_M_contig1046:88695..90107Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1046 88696..90107 -
1680866420.9346962-UTR-A-nodosum_M_contig1046:93259..932891680866420.9346962-UTR-A-nodosum_M_contig1046:93259..93289Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1046 93260..93289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866420.9047368-CDS-A-nodosum_M_contig1046:90107..901761680866420.9047368-CDS-A-nodosum_M_contig1046:90107..90176Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1046 90108..90176 -
1680866420.9258647-CDS-A-nodosum_M_contig1046:93082..932591680866420.9258647-CDS-A-nodosum_M_contig1046:93082..93259Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1046 93083..93259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1046.8.1prot_A-nodosum_M_contig1046.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1046 90108..93259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1046.8.1

>prot_A-nodosum_M_contig1046.8.1 ID=prot_A-nodosum_M_contig1046.8.1|Name=mRNA_A-nodosum_M_contig1046.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=82bp
MAMFPPGCFACHVDCATGCADDQPYNHPYALTTNYEADENAVDENRPSHP
DSRSTTLHTKEASAVMRFVLWVLDVKTDTSF*
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mRNA from alignment at A-nodosum_M_contig1046:88696..93289-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1046.8.1 ID=mRNA_A-nodosum_M_contig1046.8.1|Name=mRNA_A-nodosum_M_contig1046.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4594bp|location=Sequence derived from alignment at A-nodosum_M_contig1046:88696..93289- (Ascophyllum nodosum dioecious)
GAATCGTCACGTTCTTAGAAGGCTGAAGCTATGGCGATGTTCCCACCGGG
TTGCTTCGCGTGTCATGTAGACTGTGCGACGGGGTGCGCAGATGACCAGC
CGTACAATCACCCGTACGCGTTGACGACGAACTATGAAGCAGACGAAAAC
GCCGTGGACGAAAATCGGCCATCACATCCAGACTCTAGGTCGACTACACT
TCACACGGTAAGGTCCTTCCTAGTAAAAAACATGTTGTATTCGAACGTAT
CCCAGGTAGCCCTAGTGGATTGGAGTGAAAAAGAATGCTTTCGGCGAATG
GCAGATGCGTCCGGTTGGTTGTTGGAGTAATTAGAGTAAACGGGGTACGT
CGAGACAGTACAAGTAGTAATCATCCAGGAGAAGCCCTGCACTACCCGCC
CATACTACAAACAGGGGTAAACAGAGTACTATATAGTCCACAGGTGCAGC
AAATTTTTCTTTAAAAAGGCGCTGCACTCTATGTATGAGTATGCAGAGAA
CAGTACGTTGAACTGAATGTTGTACCTGTACTACTGTAGTGCCCCGATCC
TACGCCGTGCGCTACCTTTCCATAACACCGGACATCACCTGCTTCCCAGC
AACGTAGTAGCTGGGCACACGGGATCACCTACAAATCCCAAATCCCTGAA
GACCCGTTTTTCAAATTTCCAGCATTTTTCGGATCTTTTTCCTGGAGCAT
TTATTTTCTGCAATGTACAAGCAGCTTTTCCCTGACCTTTTTGTTGTAAC
CGGTGAACTTCCCGTATCAACAGACATACCAGTACAGACGAGTGTATAAA
GAAAAATCAGAACGCACCTAGACCTTCTGAGCATCCCCCGGTACTTTCAG
GACCATATTTAATCTGAATGTGGAGAATGAAGACGCTTACGCGGGACGGG
ACGGCGGAACCTGTCTCGCTAGAACAATTTCTCCGGCGCGAACGGAGACA
GGGAAAAAACACGGAGCAGGAGCGGCAACCGTACCCGGTTGATCCATACT
CTGCTGAAAGTGCTGACCTTACATACTCTACTACAAGTTACGGCCATACG
TACACCACTGATCCATACTCTGCCGAAAGTGCTGACCATACATACTCTAC
CATAAGTTATGGCTATACATACACTACTGATCCATCTGCTGAAAGTGCTG
TCCATAAATATTCTACTATTAATACCTGGTGTAAGTTATGGCTGGCCATA
CATACAATACTGATCAATACTTTGGTGAAAGTGCTGACTATACATACATA
CAGAACCTCCTGAGCCCTCCAGATATAACATGAAATATCCGTTACGTACC
ATATGGAAGGGGGTTGCGCTGCCAGACTTTTTAAAAAGAAAAATTTGAAC
GCATCTAGACCTTCTGAGCATCCCCCAGTCAGGGGGAAAAAATGTCAAAA
CGTTTAGGTGGGATCATAGGCTGCAAAGACAAAACCTTTTCATGGCATTT
AAACGGGTTCCACGATGGTAGTAACATTGTGTAACAGTATAATGTCGGGG
AGAAGCCCACCGTTATACTGGTATTATATTAATAATGTCTTTTTGTTCTC
TTTCCCCTGTTCAGCAGACCACGAGCGGGATTGGCTATCGTGCAAAGTAC
CTTAGTTTTTTCGGTTTCCGCTGCCAATGCGCCGAATGTGAGAAACATTT
TGACATTTTCCCCACCGACTGGGGGATGCTCAGACACAGAAGGTCTACTA
GCCTAGATGAGTTCAGATTTTTCTTTAAACAAAACCTAGGTGTTGTCTTT
GCAGCCTATGATCCCATCTAAACGTTTTGACATATTTCCCCCTGACTGGG
AGATGCTCAGAAGGTCTACAGTAGATGCGTTCAGACAGCCAACGTTCCCA
CCTAAACGTTTTGAACTTTCCCCTTGTTGGGTGGATGTTATTATTAATAA
CAGAAGGTTGTTCAGGTTTTTCTTTCAACAAACCTCTGGTACAGCTCACA
AGGTCTAGGTGCGTTCTGATTTTTCTTTAAAAACCTCTGGTACAGTAGTT
GTATCGCTGAAAATGCTGCTGTAGATGTTAAACGTATCATTTTTGTTGTT
GGTCCCTTGGTCCCTTGGTTCACGAATGTTACGGTTGACGCTCTCCTAAA
ACCTTCTAAAGATGTGAACAACGCGAAATTATTTTGTGCCATTCGGAAGA
ACATGCGCCGGCGATTGTCGTTGAATGCGTAGAACTGTACCACTACAGAA
ACAAGTTTGTACCGATTCTGGGTTGGTCTATAGACTACCCAAGCACCGGT
CCAAGTTGCAGAATGCTCACATTTGACACTCTAAATAACGAAGGCGATTG
GTCACATTATTTGACACTTGCTAACGAACTCGATAGTCTGATGTTCACCC
AAGTCGCGGTCGATGGTCATGTCGAGGAGTCAAAACCAGCCGAAAAAGTC
TGATCACTTGTACTGAAGTGTTCGCAGTGCATGCGGTAGGTACTTCAATC
GTCGAAACCATTACATATGAACTCAACTGCTCCAATCAGACTTTTACCGT
CCTACTACCAGTACTTGAGCCAAAACGATCGAACACCACAGCTTCATCAG
AGCGCTTACAAGAAAAAATAATTTCGGCTATGGGTTTGTATCGACTCATA
GTTTTTGGGTCGTGAACGCAGCACACAACGGTACCCCGCGTACGGAGGGA
GTCCTTCGTACAACGTGGCAGTTGCTGCAATGAGCGATGCTTGAGGGATT
TTTCAACAGTACTAACTTGTTACTTACTGGTATTGCTATAACAGCTACGG
GTATGACGATCTCGGTTTGATCTGACGTTGAGGTTATGTGAAAGCAAAGT
CGATCAAAAGGTGTCCTATTACTATAAAATTACTGTATACTGTATACTGC
ATTCGCACAACGGGGAAGTAGGTCTAAGTTTCTCCCTTAAGGCGGCAGCC
TGACAACGGTATCCATGTAACATTGAATCTTGAACGCTTAATATGATCAA
CCTACTGTACTGTACTGTACTGCATTTCCTCTCATACTCCATTCGGAATG
CGCCGGGAAATACTTGTTCTCATCCCGATTTGTTTTCCCATTGTCCGTCC
GCCTGTTATCTTCTCGCCCGATGAATGCCATTAACGCTGTGCTGGGGTGA
ATGTTCGATGCAGAAGGAGGCTTCAGCCGTGATGCGTTTTGTTCTCTGGG
TTCTTGACGTGAAGACCGACACGAGCTTTTGAGAGCCTTGAGTCGGAGCT
CAACCGACGGACGTGCAGAGATCTCCATTATATTACTAGTTGTACATGTT
CCTCTATTCCTCTTTGTTCCCCTGTTTAGTGTAAGGGTGTGGTGTCGTTG
TGACCAAGCGTTGTGTGGTGGTAACTCGTGTCTCGTGTCCCCTGGCGAGC
GAGCCTGCGAATATAGTGGCGACTGTGGTCGAAGGTGTGGTTATTCCCGT
TACTTTTTTTACGCTTGTCTGTGTCCTTTATTCACGGCCCACTCCGCATG
TTTTTTGGTTTGTGCTTCGTGTATGGTTTTTGGTGTTTTCTAGTGTATGA
AGTAAAAGTAATCGAGGGTCAGATTGGGGGTACAGCAAGGGGAAAAGTTT
TGGTGGTCAGATTGTCCGTTCTAGAGGTGAACCTATCCCTCGCTCTTCCA
ATACAGTACATGTAGCTCTACAGTACGAGGTGTCATTTTCGGCGCTTACT
TTGACTGACTGTGCGTGGTGGAGTTTCCTTCGTATTGAAATACAGTTCGT
GGACTTCCAAACGTTGGTACTTCGGTTTCTGTATCACCTAAGCCTTGTTG
GCAACGTTGAGTTCACCACTTTTCCCGAATTAGCGGCGCAATCACATTAT
TTTTTTTAGGTTCTATGTGAGACATGGCTAGCATGTAAAATAAAGCAATA
AAGTCGGAACATAATTTGGACGAGGGTACGTGTAAAAAAAAAGATCGCAC
CCTCTGCGTTGATTTCTTGTCAACCCTCAGTGATCGGTTCCGTGGAATCA
AAATACGTAGAGAGACATTATATAGTTTTTGAACATAAGTCAAGAGGCTT
CGCGAGAACGGTGATCTATGCATAGGTCGGGGTATCTGATCTCTGCAGTA
TGATACATTATGATACAGTACAGTAAGCCGAAAATTGTTGTGAGGGTGGG
GGCAAGCGGGGCGCTTGTAGCTGCCCCGTTTTCTTGGAAACTGAATCACT
GCCTTGAGCGATCCTCGACCAAGCTGGCTTGTTGCAAGCGATGCATTCGC
CTTTGAATTACCTGAAAGTGCACGCGCACACGTTTGGTGAGAAAAAAACA
CCCGTGTATCAACCATAAGACTGCACGTATCAGGTACGGGTGATTGGCCC
TAGGAAGCACGGAAATCCCACCGCAAACAAGGACCGCTGCTCGATCGCTG
TTGATGCACTGCGTGCGGGAAGGTGGGCACCTTTCACAGTCTTTTGACAA
CAACGTCGCTGAAATTCCTCTAAGAAACCCTAGGTTTCTAGAGGCTTCAC
CGGACCAAAAAGAAAAACATGAATGAATGAATGAGTGTCCGGTCTCACAA
CGAAAGCCCGAACAACGCATTTTTTTGAGCCGAACGCCCGCGGCGCGAGA
AGCTGTCCCATCGCTCACCTCATACGATTGTAGACGCCCTCAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1046:88696..93289-

>mRNA_A-nodosum_M_contig1046.8.1 ID=mRNA_A-nodosum_M_contig1046.8.1|Name=mRNA_A-nodosum_M_contig1046.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at A-nodosum_M_contig1046:88696..93289- (Ascophyllum nodosum dioecious)
ATGGCGATGTTCCCACCGGGTTGCTTCGCGTGTCATGTAGACTGTGCGAC
GGGGTGCGCAGATGACCAGCCGTACAATCACCCGTACGCGTTGACGACGA
ACTATGAAGCAGACGAAAACGCCGTGGACGAAAATCGGCCATCACATCCA
GACTCTAGGTCGACTACACTTCACACGAAGGAGGCTTCAGCCGTGATGCG
TTTTGTTCTCTGGGTTCTTGACGTGAAGACCGACACGAGCTTTTGA
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