mRNA_A-nodosum_M_contig10458.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10458.1.1
Unique NamemRNA_A-nodosum_M_contig10458.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10458.1.1 vs. uniprot
Match: D8LL82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL82_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 2.180e-44
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 1
Query:    1 VACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQVLDDERVTSLAVGFQQVLVLCESGRVYGWGKSLRGQLGIG 261
            VACSAALTVVL EDG+VYCMGYNRWGQCGQG DNVFT+FEPLRVGG+ L+ E V  LAVGFQQVLVLCESGRV+GWGK LRGQLG+G
Sbjct:  167 VACSAALTVVLGEDGKVYCMGYNRWGQCGQGPDNVFTVFEPLRVGGRALEREAVVKLAVGFQQVLVLCESGRVFGWGKGLRGQLGVG 253          
BLAST of mRNA_A-nodosum_M_contig10458.1.1 vs. uniprot
Match: A0A6H5JG88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG88_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 2.450e-42
Identity = 70/87 (80.46%), Postives = 78/87 (89.66%), Query Frame = 1
Query:    1 VACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQVLDDERVTSLAVGFQQVLVLCESGRVYGWGKSLRGQLGIG 261
            VACSAALTVVL EDG+VYCMGYNRWGQCGQG +N FT+FEPLRVGG+ L+ E+V  LAVG QQVLVLCESGRV+GWGK LRGQLG+G
Sbjct:  183 VACSAALTVVLGEDGKVYCMGYNRWGQCGQGPENEFTVFEPLRVGGRALEREQVVKLAVGLQQVLVLCESGRVFGWGKGLRGQLGVG 269          
BLAST of mRNA_A-nodosum_M_contig10458.1.1 vs. uniprot
Match: A0A5D6XTS7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTS7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.740e-14
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 VACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQVLDDERVTSLAVGFQQVLVLCESGRVYGWGKSLRGQLGIG 261
            + CSAALT+VL+E GR++  G N +GQCG   + V    EP+RV    LD + V  +A G+Q  L +  SG V+ WGK  RGQLG G
Sbjct:  138 LVCSAALTLVLAESGRLFAFGANTFGQCGNDREGVSEP-EPVRVA---LDGDDVVDVAAGYQHALAVTRSGAVFAWGKGERGQLGFG 220          
BLAST of mRNA_A-nodosum_M_contig10458.1.1 vs. uniprot
Match: A0A196SGG2_BLAHN (Ankyrin repeat-containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SGG2_BLAHN)

HSP 1 Score: 73.9 bits (180), Expect = 1.640e-13
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 VACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQVLDDERV-TSLAVGFQQVLVLCESGRVYGWGKSLRGQLGIG 261
            VA S AL+  L++   +Y  GYNR+GQCG    +V  ++ P +V   +LD++ +   LA GFQ    LCESGRVY WGK+  GQLG G
Sbjct:  143 VAASMALSFCLTDTHHIYAYGYNRYGQCGVDMKDV-NLYAPKQV---MLDEDEIPVKLACGFQHACCLCESGRVYAWGKANHGQLGRG 226          
BLAST of mRNA_A-nodosum_M_contig10458.1.1 vs. uniprot
Match: A0A484E934_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E934_BRELC)

HSP 1 Score: 70.5 bits (171), Expect = 2.750e-12
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 VACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQVLDDERVTSLAVGFQQVLVLCESGRVYGWGKSLRGQLGIG 261
            + CSAALT +L+E G+++ +G N +GQCG G + V ++  P  V     D ++V  +A G+Q  L + E+G V+ WGK  RGQLG G
Sbjct:  143 IVCSAALTFILTECGKLFTLGANGYGQCGIGEEGV-SVQLPTHVR---FDGDKVVDIASGYQHGLAVTENGTVFCWGKGERGQLGFG 225          
BLAST of mRNA_A-nodosum_M_contig10458.1.1 vs. uniprot
Match: B7G4H9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G4H9_PHATC)

HSP 1 Score: 67.8 bits (164), Expect = 2.600e-11
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    1 VACSAALTVVLSEDGRVYCMGYNRWGQCGQG--SDNVFTIFEPLR---------VGGQVLDDERVTSLAVGFQQVLVLCESGRVYGWGKSLRGQLGIG 261
            V+CSAALT +++E G+VY  G N +GQCG G  S++V+    PLR           G++     V  +A+G Q  + L E G V+ WGK  RGQLG G
Sbjct:  184 VSCSAALTAIVTESGKVYAFGLNGFGQCGIGMTSNHVWNPSSPLRGLTSEFANQPRGEMEQSYPVVDVALGLQHGICLNEVGEVFCWGKGERGQLGQG 281          
BLAST of mRNA_A-nodosum_M_contig10458.1.1 vs. uniprot
Match: A0A7S2RFP8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RFP8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.720e-10
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 VACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQVLDDERVTSLAVGFQQVLVLCESGRVYGWGKSLRGQLGIG 261
            +AC   +T +L+ +GRVYC GYN  GQCG G  N    ++   V G V  + +  + A G + VL +  +G +Y WG + RGQLG G
Sbjct:   84 IACGNEITCLLTNEGRVYCCGYNDSGQCGTGDTNRVRTWQ--LVEGLVGKNVQALASANGCEHVLAITNNGELYAWGYNSRGQLGHG 168          
BLAST of mRNA_A-nodosum_M_contig10458.1.1 vs. uniprot
Match: UPI0009956F70 (X-linked retinitis pigmentosa GTPase regulator-like n=1 Tax=Pseudomyrmex gracilis TaxID=219809 RepID=UPI0009956F70)

HSP 1 Score: 60.5 bits (145), Expect = 1.000e-8
Identity = 32/86 (37.21%), Postives = 47/86 (54.65%), Query Frame = 1
Query:    1 VACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQVLDDERVTSLAVGFQQVLVLCESGRVYGWGKSLRGQLGI 258
            VAC    T+VL+E+G +YC G N  GQ G G+ NV  +  P  +   V  DE++  +  G     +L ESG++Y  G    G+LG+
Sbjct:  252 VACGGHHTLVLAENGSIYCTGSNASGQLGLGT-NVHEVLTPKLLSSGVYQDEKIVKIVCGESHSAILTESGKLYMCGDGRHGKLGL 336          
BLAST of mRNA_A-nodosum_M_contig10458.1.1 vs. uniprot
Match: A0A026WPV5_OOCBI (X-linked retinitis pigmentosa GTPase regulator n=4 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WPV5_OOCBI)

HSP 1 Score: 59.7 bits (143), Expect = 1.870e-8
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1
Query:    1 VACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQVLDDERVTSLAVGFQQVLVLCESGRVYGWGKSLRGQLGI 258
            V C    T+VL+E+G +YC G N  GQ G G+ NV  I  P  +    L DER+  +A G     +L ESG+ +  G    G+LG+
Sbjct:  250 VVCGGHHTLVLAENGNIYCSGSNASGQLGMGT-NVVEIHTPKLLPRGALQDERIVKIACGESHSAILTESGKFFTCGDGRHGKLGL 334          
BLAST of mRNA_A-nodosum_M_contig10458.1.1 vs. uniprot
Match: A0A7S4INV5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4INV5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.470e-8
Identity = 34/100 (34.00%), Postives = 48/100 (48.00%), Query Frame = 1
Query:    4 ACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGG----------------QVLDDERVTSLAVGFQQVLVLCESGRVYGWGKSLRGQLG 255
            A +    VV   DG +Y  G N  GQCG G +    +++P+ V G                +   D  + S+++G Q  L L + GR+YGWGK  RGQLG
Sbjct:   95 ASAGVTAVVGKRDGTLYAFGLNHRGQCGVGDERSNNVWDPMPVMGMGPFNVAEGVDGKGRLRRRQDRPIVSVSLGLQHGLALDDEGRLYGWGKGNRGQLG 194          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10458.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL82_ECTSI2.180e-4483.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG88_9PHAE2.450e-4280.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XTS7_9STRA1.740e-1447.13Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A196SGG2_BLAHN1.640e-1346.59Ankyrin repeat-containing protein n=1 Tax=Blastocy... [more]
A0A484E934_BRELC2.750e-1242.53Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
B7G4H9_PHATC2.600e-1141.84Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2RFP8_9STRA1.720e-1040.23Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
UPI0009956F701.000e-837.21X-linked retinitis pigmentosa GTPase regulator-lik... [more]
A0A026WPV5_OOCBI1.870e-838.37X-linked retinitis pigmentosa GTPase regulator n=4... [more]
A0A7S4INV5_9STRA2.470e-834.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10458contigA-nodosum_M_contig10458:4494..4754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LL82
PFAMsRCC1,RCC1_2
Model size261
Max annot lvl2759|Eukaryota
KEGG koko:K19607
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.58e-45
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Descriptionguanyl-nucleotide exchange factor activity
Cds size261
COG categoryDZ
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866420.0456479-CDS-A-nodosum_M_contig10458:4493..47541680866420.0456479-CDS-A-nodosum_M_contig10458:4493..4754Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10458 4494..4754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10458.1.1prot_A-nodosum_M_contig10458.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10458 4494..4754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10458.1.1

>prot_A-nodosum_M_contig10458.1.1 ID=prot_A-nodosum_M_contig10458.1.1|Name=mRNA_A-nodosum_M_contig10458.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=87bp
VACSAALTVVLSEDGRVYCMGYNRWGQCGQGSDNVFTIFEPLRVGGQVLD
DERVTSLAVGFQQVLVLCESGRVYGWGKSLRGQLGIG
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mRNA from alignment at A-nodosum_M_contig10458:4494..4754-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10458.1.1 ID=mRNA_A-nodosum_M_contig10458.1.1|Name=mRNA_A-nodosum_M_contig10458.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig10458:4494..4754- (Ascophyllum nodosum dioecious)
GTCGCATGCTCCGCGGCCCTCACAGTGGTTCTAAGCGAGGATGGTCGTGT GTACTGCATGGGCTACAACCGGTGGGGTCAGTGCGGTCAGGGTTCAGACA ACGTGTTCACGATCTTCGAGCCCTTGCGTGTGGGCGGGCAGGTGCTGGAC GACGAGCGAGTGACGTCTCTGGCGGTGGGGTTTCAACAGGTCTTGGTCCT CTGCGAAAGCGGCCGAGTGTATGGATGGGGCAAGTCTCTCAGAGGGCAGC TTGGCATCGGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10458:4494..4754-

>mRNA_A-nodosum_M_contig10458.1.1 ID=mRNA_A-nodosum_M_contig10458.1.1|Name=mRNA_A-nodosum_M_contig10458.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig10458:4494..4754- (Ascophyllum nodosum dioecious)
GTCGCATGCTCCGCGGCCCTCACAGTGGTTCTAAGCGAGGATGGTCGTGT
GTACTGCATGGGCTACAACCGGTGGGGTCAGTGCGGTCAGGGTTCAGACA
ACGTGTTCACGATCTTCGAGCCCTTGCGTGTGGGCGGGCAGGTGCTGGAC
GACGAGCGAGTGACGTCTCTGGCGGTGGGGTTTCAACAGGTCTTGGTCCT
CTGCGAAAGCGGCCGAGTGTATGGATGGGGCAAGTCTCTCAGAGGGCAGC
TTGGCATCGGA
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