mRNA_A-nodosum_M_contig10455.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10455.1.1
Unique NamemRNA_A-nodosum_M_contig10455.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10455.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10455contigA-nodosum_M_contig10455:3240..4406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size479
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866419.9377897-UTR-A-nodosum_M_contig10455:3239..35361680866419.9377897-UTR-A-nodosum_M_contig10455:3239..3536Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10455 3240..3536 +
1680866419.9668062-UTR-A-nodosum_M_contig10455:4404..44061680866419.9668062-UTR-A-nodosum_M_contig10455:4404..4406Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10455 4405..4406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866419.95038-CDS-A-nodosum_M_contig10455:3536..35991680866419.95038-CDS-A-nodosum_M_contig10455:3536..3599Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10455 3537..3599 +
1680866419.958877-CDS-A-nodosum_M_contig10455:4287..44041680866419.958877-CDS-A-nodosum_M_contig10455:4287..4404Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10455 4288..4404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10455.1.1prot_A-nodosum_M_contig10455.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10455 3537..4404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10455.1.1

>prot_A-nodosum_M_contig10455.1.1 ID=prot_A-nodosum_M_contig10455.1.1|Name=mRNA_A-nodosum_M_contig10455.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=60bp
MLDSFFEFIRDKCGGSVTDCQWDRNGRFYRCFLMLGGAAHFSSRGVQKVV
QNYARIILL*
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mRNA from alignment at A-nodosum_M_contig10455:3240..4406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10455.1.1 ID=mRNA_A-nodosum_M_contig10455.1.1|Name=mRNA_A-nodosum_M_contig10455.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1167bp|location=Sequence derived from alignment at A-nodosum_M_contig10455:3240..4406+ (Ascophyllum nodosum dioecious)
CGAGGCTGTCAGGCTCTAGTTCGTGCATGTTGGCAATCCTCGACGCAAGA
GTTGAAGGTCACAGAGGCCTCTTATAAACATACGCTATGCTCTGGGGGTA
CCAAGAATGCAAGCCCAAGAGCTCTGCGGGCCGAGGCTGCCAAATTCATT
AATTCGAATACAAATAAGACGGCATCATCATTGAAGAACTCATTAAAGTC
CCAGACGGGGTGCGGTAAGCTGAACGGACCTTCCGCCAGTCGCCTCCGCA
AGGAGATTCTCGGTACAGGGGATAAAGAAGTCTCGGCATCGTATACGATG
CTCGATAGCTTCTTCGAGTTCATACGTGACAAGTGCGGAGGAAGCGTTAC
CGACTGTCAGGTGAGAGCTAGCCCGAAAAGAGGGAATGCTTGAGCGCAGT
GGGCCTGTATGCCTTTTGGTCCGGGACCCTGTGTCCATCACGTCCGTGTC
CTCATCGGAAAATTTCGTTAGTTTGTACTAGAGTCCTTATATCACTGTCT
GTAGTTCGATTTTGAGTCACACTTTTGAATTTGAATTTGATTTTGAGTCC
AAATGATTTCTGAATGGGTGGCAACTGCTGTAACTGAACATATCTGTTCA
AAGATGAGACAACTTTCAACGTCCATGAAAATTTCGCGTAATTGTGTGTG
TCTGTCTTCGAAAATTGCTGTCATTATTTTACGCAATGGGACAGTAGAGT
CTAGGCTATCACTGTCTGTAATTCGATTTTGAGTTACACTTTAGAATTTG
AATTTGACTTTGAATCCAAATGATGTTTGTTTTTGTGAATTCCGTCCGTG
TTCTCATCGGAAAATTTCGTTAGTTTGTACTATTAATAGAGTTCTCATAT
CACTGTCTGTAGTTCGATTTTGAGTTAAACTTTTGAATTTGAATTTGACT
TCCAAATGATTTATGAATGGGTGGCAACTGCTGTAACTGAACATATCTGT
TCAAAGATCGGACAACTTTTCAACTTTTCAAAGTCCATACAAATTTCGGG
TAATTACGTCTGTCTTCGAAAATTGCTGTCATCCCTTATTTTACACAGTG
GGACAGGAACGGCCGATTTTACCGGTGCTTCCTTATGCTTGGTGGAGCGG
CTCACTTTTCTTCCCGGGGCGTTCAAAAGGTTGTCCAAAACTACGCCCGC
ATTATTTTGCTCTAGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10455:3240..4406+

>mRNA_A-nodosum_M_contig10455.1.1 ID=mRNA_A-nodosum_M_contig10455.1.1|Name=mRNA_A-nodosum_M_contig10455.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=180bp|location=Sequence derived from alignment at A-nodosum_M_contig10455:3240..4406+ (Ascophyllum nodosum dioecious)
ATGCTCGATAGCTTCTTCGAGTTCATACGTGACAAGTGCGGAGGAAGCGT
TACCGACTGTCAGTGGGACAGGAACGGCCGATTTTACCGGTGCTTCCTTA
TGCTTGGTGGAGCGGCTCACTTTTCTTCCCGGGGCGTTCAAAAGGTTGTC
CAAAACTACGCCCGCATTATTTTGCTCTAG
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