mRNA_A-nodosum_M_contig10436.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10436.8.1
Unique NamemRNA_A-nodosum_M_contig10436.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10436.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10436contigA-nodosum_M_contig10436:7532..8300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size332
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866418.5774777-UTR-A-nodosum_M_contig10436:7531..75531680866418.5774777-UTR-A-nodosum_M_contig10436:7531..7553Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10436 7532..7553 +
1680866418.7913935-UTR-A-nodosum_M_contig10436:8266..83001680866418.7913935-UTR-A-nodosum_M_contig10436:8266..8300Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10436 8267..8300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866418.713174-CDS-A-nodosum_M_contig10436:7553..76061680866418.713174-CDS-A-nodosum_M_contig10436:7553..7606Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10436 7554..7606 +
1680866418.7774868-CDS-A-nodosum_M_contig10436:8043..82661680866418.7774868-CDS-A-nodosum_M_contig10436:8043..8266Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10436 8044..8266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10436.8.1prot_A-nodosum_M_contig10436.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10436 7554..8266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10436.8.1

>prot_A-nodosum_M_contig10436.8.1 ID=prot_A-nodosum_M_contig10436.8.1|Name=mRNA_A-nodosum_M_contig10436.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
MLTSGEGKILTNPTQGNRRFSRGSKVSPCCSSNMTCMTSGVTFGVQPSGR
LDQKVAIHELRQLLRRRIGKKRELFIGLISTGSRYELLCWV*
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mRNA from alignment at A-nodosum_M_contig10436:7532..8300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10436.8.1 ID=mRNA_A-nodosum_M_contig10436.8.1|Name=mRNA_A-nodosum_M_contig10436.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=769bp|location=Sequence derived from alignment at A-nodosum_M_contig10436:7532..8300+ (Ascophyllum nodosum dioecious)
GGCTCGAGCCGTCCCTTCGAAGATGCTGACCTCTGGGGAGGGCAAGATTT
TGACGAACCCTACACAGGGGAACAGGTGATGGACCGGACCGAGGCTGGAA
ACAAACCCCCATAGCTCTAGACGGATAGGTTGTACTAATATCAATATTAA
AGTTCGTGCATGAGCCCAGCTCCATTGGGCCTTTCACTTATAGCCGATGG
ACCTCATCATTACCATCCTGCCTGTGGTCACTAAGGATCTTCCCATCTCT
CCCCGGTTCACGCCTTACGATTTTTTATCGCGATGCAAGTTCAGCACTCT
TACAACTCGTCAACCAATGGTTGAATTTAACAAACCAAAAATCAACCAGA
CCAGGTACTTGTGTTCCTAGTCTCCAATTTGTCGGAAGCGGCAGCCGTGG
AGCAACGCCTCCCCAAGGTGACTACCGCTATTTATATCATTGACGAAGCA
CCTGGACTACGTGTTCCCCGTGTTCCTCGTTTCGTGTGCCTCGCTTGTCT
CGCGTCTTGCAGGCGATTTTCGAGGGGTTCTAAGGTTTCCCCGTGTTGCT
CAAGTAACATGACTTGCATGACATCGGGTGTAACATTTGGTGTGCAACCT
TCGGGGCGCTTGGATCAAAAGGTTGCGATTCATGAGCTACGTCAACTCCT
ACGCCGCCGCATCGGCAAGAAACGGGAGCTATTCATAGGCTTAATTTCTA
CCGGTTCGCGCTATGAGTTGCTCTGCTGGGTTTGAGTGAGCGTTTCTTCT
CTTCTGGCATTTGGCTATT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10436:7532..8300+

>mRNA_A-nodosum_M_contig10436.8.1 ID=mRNA_A-nodosum_M_contig10436.8.1|Name=mRNA_A-nodosum_M_contig10436.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig10436:7532..8300+ (Ascophyllum nodosum dioecious)
ATGCTGACCTCTGGGGAGGGCAAGATTTTGACGAACCCTACACAGGGGAA
CAGGCGATTTTCGAGGGGTTCTAAGGTTTCCCCGTGTTGCTCAAGTAACA
TGACTTGCATGACATCGGGTGTAACATTTGGTGTGCAACCTTCGGGGCGC
TTGGATCAAAAGGTTGCGATTCATGAGCTACGTCAACTCCTACGCCGCCG
CATCGGCAAGAAACGGGAGCTATTCATAGGCTTAATTTCTACCGGTTCGC
GCTATGAGTTGCTCTGCTGGGTTTGA
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