mRNA_A-nodosum_M_contig10436.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10436.6.1
Unique NamemRNA_A-nodosum_M_contig10436.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10436.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10436contigA-nodosum_M_contig10436:6696..7525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog13037.EHJ66911
PFAMsPkinase
Model size338
Max annot lvl33208|Metazoa
KEGG koko:K04345
KEGG Pathwayko01522,ko04010,ko04014,ko04020,ko04024,ko04062,ko04113,ko04114,ko04138,ko04140,ko04211,ko04213,ko04261,ko04270,ko04310,ko04340,ko04341,ko04371,ko04530,ko04540,ko04611,ko04713,ko04714,ko04720,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04750,ko04910,ko04911,ko04912,ko04913,ko04914,ko04915,ko04916,ko04918,ko04919,ko04921,ko04922,ko04923,ko04924,ko04925,ko04926,ko04927,ko04934,ko04961,ko04962,ko04970,ko04971,ko04976,ko05012,ko05020,ko05030,ko05031,ko05032,ko05110,ko05146,ko05165,ko05166,ko05169,ko05200,ko05203,ko05205,ko05414,map01522,map04010,map04014,map04020,map04024,map04062,map04113,map04114,map04138,map04140,map04211,map04213,map04261,map04270,map04310,map04340,map04341,map04371,map04530,map04540,map04611,map04713,map04714,map04720,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04750,map04910,map04911,map04912,map04913,map04914,map04915,map04916,map04918,map04919,map04921,map04922,map04923,map04924,map04925,map04926,map04927,map04934,map04961,map04962,map04970,map04971,map04976,map05012,map05020,map05030,map05031,map05032,map05110,map05146,map05165,map05166,map05169,map05200,map05203,map05205,map05414
KEGG ModuleM00695
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004690,GO:0004691,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005952,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0031588,GO:0032991,GO:0034237,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051018,GO:0061695,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1902911,GO:1990234
Exons3
Evalue2.28e-06
EggNOG OGsKOG0616@1|root,KOG0616@2759|Eukaryota,38C4N@33154|Opisthokonta,3BD0W@33208|Metazoa,3CR67@33213|Bilateria,41U8T@6656|Arthropoda,3SGRC@50557|Insecta,448FT@7088|Lepidoptera
EC2.7.11.11
DescriptionExtension to Ser/Thr-type protein kinases
Cds size252
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866418.8695812-UTR-A-nodosum_M_contig10436:6695..67731680866418.8695812-UTR-A-nodosum_M_contig10436:6695..6773Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10436 6696..6773 +
1680866418.8796928-UTR-A-nodosum_M_contig10436:6974..69801680866418.8796928-UTR-A-nodosum_M_contig10436:6974..6980Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10436 6975..6980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866418.8912573-CDS-A-nodosum_M_contig10436:6980..71471680866418.8912573-CDS-A-nodosum_M_contig10436:6980..7147Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10436 6981..7147 +
1680866418.904025-CDS-A-nodosum_M_contig10436:7440..75251680866418.904025-CDS-A-nodosum_M_contig10436:7440..7525Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10436 7441..7525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10436.6.1prot_A-nodosum_M_contig10436.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10436 6981..7525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10436.6.1

>prot_A-nodosum_M_contig10436.6.1 ID=prot_A-nodosum_M_contig10436.6.1|Name=mRNA_A-nodosum_M_contig10436.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=84bp
MFEMAKGRTPFEDCPATLASRRRPLLFSGDNDPVEDVIAKTMTFDPDERV
INVGVGFAALRSHSWFLEFDWEELRANRLPAPWV
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mRNA from alignment at A-nodosum_M_contig10436:6696..7525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10436.6.1 ID=mRNA_A-nodosum_M_contig10436.6.1|Name=mRNA_A-nodosum_M_contig10436.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=830bp|location=Sequence derived from alignment at A-nodosum_M_contig10436:6696..7525+ (Ascophyllum nodosum dioecious)
ATGAATGCTATTCTGTAACTGTGGCGCAACATGTGACTTGGAGTTGGAGT
TATACCGTTGACCCCGTCAGTTGATCCAGTGAGTCACCGCGTCTACCACG
TGGCGGGGGGAGTTCCGGGAAGCGCTATTTACAGGACGTACGAGTTCCGG
TACTGTACAAGTACTACTGTATGCAGTACCTGGTAAAACCGGAGTGCAGT
ACTTTTGTATACTGTATACTGTATCTGGAACGGTAATCCTTTTTTGCTTA
CCGTATCGTATTGCGCATGGACACGACAGGTCATCATGTTCGAGATGGCG
AAGGGGCGGACGCCTTTCGAGGACTGTCCCGCGACGTTGGCATCTCGAAG
GAGGCCCCTTTTATTTTCCGGCGACAATGACCCCGTCGAGGATGTTATCG
CCAAGACGATGACGTTCGACCCGGACGAGCGGGTCATCAACGTTGGAGTA
GGGTGAGGAGCAAGGTTTTACATATTAATATTATAGTAGAAATACAGCAG
CGAGCGTCGCGGCCCCGGTGCGACTATTAACATTGTCCTCTTGTTTGTGA
GAAGCCCGTCCGTTGCCTTCGAACGTGTACGCGACTCGAGGTCAAGCAGG
CCTCTGGCATGCCTGGATCGACCCCTCAGCACCGATTTTCATTAATCCAG
TAATCGTACTTTGGAGCCAAACGCCTCAGCGCGATTTCCGATACGATACG
GCCCCCGCAACGATCCTCTCTCTAAATCTACCGTACATTTCAAAGGTTTG
CCGCGCTGAGGAGCCACTCGTGGTTTCTTGAGTTCGACTGGGAGGAGCTT
CGGGCCAACCGATTGCCGGCGCCGTGGGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10436:6696..7525+

>mRNA_A-nodosum_M_contig10436.6.1 ID=mRNA_A-nodosum_M_contig10436.6.1|Name=mRNA_A-nodosum_M_contig10436.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at A-nodosum_M_contig10436:6696..7525+ (Ascophyllum nodosum dioecious)
ATGTTCGAGATGGCGAAGGGGCGGACGCCTTTCGAGGACTGTCCCGCGAC
GTTGGCATCTCGAAGGAGGCCCCTTTTATTTTCCGGCGACAATGACCCCG
TCGAGGATGTTATCGCCAAGACGATGACGTTCGACCCGGACGAGCGGGTC
ATCAACGTTGGAGTAGGGTTTGCCGCGCTGAGGAGCCACTCGTGGTTTCT
TGAGTTCGACTGGGAGGAGCTTCGGGCCAACCGATTGCCGGCGCCGTGGG
TG
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