mRNA_A-nodosum_M_contig10436.12.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10436.12.2
Unique NamemRNA_A-nodosum_M_contig10436.12.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.12.2 vs. uniprot
Match: D7FR38_ECTSI (AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR38_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.720e-29
Identity = 59/100 (59.00%), Postives = 70/100 (70.00%), Query Frame = 2 
Query:    2 YENLEHVALMEKCLGQFPSAMLTQAPRRADFFDEDTGMCWGTTECKLPQRYNIWRMRRL-------QRTGFGDLLEKLLAIDPGRRATATEALRHRFFKD 280
            + NLEH+ALMEKC+G FP  ML +APR  DFFD  +G+C G TEC    R +I RM+RL       + TG GDLL+KLL +DP RRATATEAL HRFF D
Sbjct:  240 HHNLEHLALMEKCVGLFPPNMLLKAPRSRDFFDLTSGLCKGATECDSENRRHIRRMKRLGDITESVEDTGMGDLLDKLLTLDPKRRATATEALSHRFFDD 339
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.12.2 vs. uniprot
Match: A0A6H5L2A1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A1_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.470e-28
Identity = 59/100 (59.00%), Postives = 70/100 (70.00%), Query Frame = 2 
Query:    2 YENLEHVALMEKCLGQFPSAMLTQAPRRADFFDEDTGMCWGTTECKLPQRYNIWRMRRLQR-------TGFGDLLEKLLAIDPGRRATATEALRHRFFKD 280
            + NLEH+ALMEKC+G FP  ML +APR  DFFD  +G+C G TEC    R +I RM+RL+        TG GDLL+KLL +DP RRATATEAL HRFF D
Sbjct:  647 HHNLEHLALMEKCVGLFPPNMLLKAPRSRDFFDLTSGLCKGATECDSENRRHIRRMKRLEDITESVEDTGMGDLLDKLLTLDPKRRATATEALSHRFFDD 746
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.12.2 vs. uniprot
Match: A0A024URA3_9STRA (CMGC/CLK protein kinase n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024URA3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.890e-14
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 2 
Query:    2 YENLEHVALMEKCLGQFPSAMLTQAPRRAD-FFDEDTGMCWGTTECKLPQRYNIWRMRRLQRTGFGD-------LLEKLLAIDPGRRATATEALRHRFFKDV 283
            +ENLEH+AL+EKC+G FP  M+  A R+A  +F  D  +CW           ++ +M+ L+    GD       LL ++LA+DP  R +A +ALRH FFK V
Sbjct:  396 HENLEHLALIEKCIGSFPVEMVANADRQAQKYFTADRSLCWPQGASTRESVDHVRKMKSLEEIIDGDDAQELLDLLTRMLAMDPKDRISAADALRHPFFKGV 497
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.12.2 vs. uniprot
Match: A0A6A5AP55_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AP55_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.200e-13
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 2 
Query:    2 YENLEHVALMEKCLGQFPSAMLTQAPRRAD-FFDEDTGMCWGTTECKLPQRYNIWRMRRLQRTGFG------------DLLEKLLAIDPGRRATATEALRHRFFKDV 283
            +ENLEH+AL+EKC+G FP+ M+ +A R+A  +F +   +CW           ++ +M+ L+    G            DLL ++LA+DP  R TA +AL+H FFK V
Sbjct:  226 HENLEHLALIEKCIGSFPADMVARADRQAQKYFTDHGALCWPQGAATRESVDHVRKMKSLEEIIDGGGDDDDGAHELLDLLTRMLAMDPTERVTAADALQHPFFKGV 332
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.12.2 vs. uniprot
Match: W4HB90_9STRA (CMGC/CLK protein kinase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HB90_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.760e-13
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 2 
Query:    2 YENLEHVALMEKCLGQFPSAMLTQAPRRAD-FFDEDTGMCWGTTECKLPQRYNIWRMRRLQRTGFG------------DLLEKLLAIDPGRRATATEALRHRFFKDV 283
            +ENLEH+AL+EKC+G FP+ M+ +A R+A  +F +   +CW           ++ +M+ L+    G            DLL ++LA+DP  R TA +AL+H FFK V
Sbjct:  396 HENLEHLALIEKCIGSFPADMVARADRQAQKYFTDHGALCWPQGAATRESVDHVRKMKSLEEIIDGGGDDDDGAHELLDLLTRMLAMDPTERVTAADALQHPFFKGV 502
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.12.2 vs. uniprot
Match: A0A397F2Z1_9STRA (Protein kinase domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F2Z1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.820e-13
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 2 
Query:    2 YENLEHVALMEKCLGQFPSAMLTQAPRRAD-FFDEDTGMCWGTTECKLPQRYNIWRMRRLQRTGFG------------DLLEKLLAIDPGRRATATEALRHRFFKDV 283
            +ENLEH+AL+EKC+G FP+ M+ +A R+A  +F +   +CW           ++ +M+ L+    G            DLL ++LA+DP  R TA +AL+H FFK V
Sbjct:  611 HENLEHLALIEKCIGSFPADMVARADRQAQKYFTDHGALCWPQGAATRESVDHVRKMKSLEEIIDGGGDDDDGAHELLDLLTRMLAMDPTERVTAADALQHPFFKGV 717
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.12.2 vs. uniprot
Match: A0A835Z1U5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.160e-13
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:    2 YENLEHVALMEKCLGQFPSAMLTQAPRRADFFDEDTGMCWGTTECKLPQRYNIWRMRRLQR-------TGFGDLLEKLLAIDPGRRATATEALRHRFF 274
            ++N+EH+ALME+C+G FP  M+  +P  A +FD      W    C    R +I RM  ++        +G G LLE +L +DP +R  A++ALRHRFF
Sbjct:  410 HDNMEHLALMERCVGPFPRHMVRASPVGAKYFDSRGVSRWRRA-CPEDSRAHIRRMPTIEELVAQDEPSGLGGLLEGILELDPDKRLRASDALRHRFF 506
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.12.2 vs. uniprot
Match: A0A6G0XF87_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XF87_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.540e-12
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 2 
Query:    2 YENLEHVALMEKCLGQFPSAMLTQAPRRAD-FFDEDTGMCWGTTECKLPQRYNIWRMRRLQRT-----GFGDLLEKLLAIDPGRRATATEALRHRFFKDV 283
            +ENLEH+AL++KC+G FP  M+ +A R+A  +F ED  + W           ++ +M+ L+          DLL K+LA+DP  R TA +AL H FF  V
Sbjct:  276 HENLEHMALIQKCIGAFPPDMVAKADRQATKYFSEDHKLKWPEMSSSQESLDHVRKMKALEEIIEDEPELLDLLTKMLAMDPAERLTAAQALEHPFFIGV 375
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.12.2 vs. uniprot
Match: A0A5D6XR46_9STRA (Protein kinase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR46_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.120e-10
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 2 
Query:    2 YENLEHVALMEKCLGQFPSAMLTQAPRRADFFDEDTGMCWGTTECKLPQRYNIWRMRRLQR--------TGFGDLLEKLLAIDPGRRATATEALRHRFF 274
            +ENLEH+AL+E+C+G  P+ M+ +A ++A  F     + W           ++ +MR L++         G  DLL+ +L +DP  RATATEAL + FF
Sbjct:  387 HENLEHLALIERCIGPLPAHMVAKACKQASKFFRRDKLDWPAGASSDESVEHVRKMRTLEQLVAPEDAAAGLLDLLKMMLVLDPENRATATEALNNPFF 485
[Close]
BLAST of mRNA_A-nodosum_M_contig10436.12.2 vs. uniprot
Match: A0A2D4BTH7_PYTIN (Serine/threonine protein kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTH7_PYTIN)

HSP 1 Score: 64.7 bits (156), Expect = 4.200e-10
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 2 
Query:    2 YENLEHVALMEKCLGQFPSAMLTQAPRRADFFDEDTGMCWGTTECKLPQRYNIWRMRRLQR--------TGFGDLLEKLLAIDPGRRATATEALRHRFF 274
            ++NLEH+AL+E+C+G  P  M+ ++   A+ F     + W           ++ RMR L++        TG  DLL+ +L +DP  R TA EAL HRFF
Sbjct:  331 HDNLEHLALIERCIGPLPQHMVERSAPHAERFFRRHRLDWPAGAQNEESVEHVRRMRSLRQILRPEDAATGLLDLLQLMLVLDPENRITAKEALNHRFF 429
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10436.12.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR38_ECTSI1.720e-2959.00AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinas... [more]
A0A6H5L2A1_9PHAE2.470e-2859.00Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A024URA3_9STRA6.890e-1440.20CMGC/CLK protein kinase n=3 Tax=Aphanomyces invada... [more]
A0A6A5AP55_9STRA1.200e-1337.38Protein kinase domain-containing protein (Fragment... [more]
W4HB90_9STRA1.760e-1337.38CMGC/CLK protein kinase n=2 Tax=Aphanomyces astaci... [more]
A0A397F2Z1_9STRA1.820e-1337.38Protein kinase domain-containing protein n=7 Tax=A... [more]
A0A835Z1U5_9STRA6.160e-1339.80Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6G0XF87_9STRA3.540e-1239.00Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A5D6XR46_9STRA3.120e-1036.36Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A2D4BTH7_PYTIN4.200e-1036.36Serine/threonine protein kinase n=1 Tax=Pythium in... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10436contigA-nodosum_M_contig10436:12156..13135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008862520.1
PFAMsPkinase
Model size286
Max annot lvl2759|Eukaryota
KEGG koko:K00924,ko:K08287,ko:K08823
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010468,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031974,GO:0031981,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045111,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0140096,GO:1901564
Exons2
Evalue1.13e-09
EggNOG OGsKOG0667@1|root,KOG0671@2759|Eukaryota
EC2.7.12.1
Descriptionprotein serine/threonine/tyrosine kinase activity
Cds size258
COG categoryQ
BRITEko00000,ko01000,ko01001,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866418.9391503-UTR-A-nodosum_M_contig10436:12155..121831680866418.9391503-UTR-A-nodosum_M_contig10436:12155..12183Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10436 12156..12183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866418.9538379-CDS-A-nodosum_M_contig10436:12183..123361680866418.9538379-CDS-A-nodosum_M_contig10436:12183..12336Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10436 12184..12336 +
1680866418.9638252-CDS-A-nodosum_M_contig10436:13030..131351680866418.9638252-CDS-A-nodosum_M_contig10436:13030..13135Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10436 13031..13135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10436.12.2prot_A-nodosum_M_contig10436.12.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10436 12184..13135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10436.12.2

>prot_A-nodosum_M_contig10436.12.2 ID=prot_A-nodosum_M_contig10436.12.2|Name=mRNA_A-nodosum_M_contig10436.12.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
MEKCLGQFPSAMLTQAPRRADFFDEDTGMCWGTTECKLPQRYNIWRMRRL
QRTGFGDLLEKLLAIDPGRRATATEALRHRFFKDV*
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mRNA from alignment at A-nodosum_M_contig10436:12156..13135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10436.12.2 ID=mRNA_A-nodosum_M_contig10436.12.2|Name=mRNA_A-nodosum_M_contig10436.12.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=980bp|location=Sequence derived from alignment at A-nodosum_M_contig10436:12156..13135+ (Ascophyllum nodosum dioecious)
GTACGAGAATCTCGAGCATGTGGCGTTGATGGAGAAGTGCTTGGGACAGT
TTCCGTCGGCGATGCTGACCCAAGCTCCCCGCAGGGCCGATTTCTTCGAC
GAGGACACCGGCATGTGCTGGGGCACAACCGAGTGTAAGCTCCCACAGCG
CTACAACATTTGGCGCATGAGGCGGCTACAGGTGAAATTCGGCCGATCCT
GTCTGTTATTTCATTGCTCGAAGCATTGTGTGATTATTCTGAAGTACAGT
ATAATTACAATAAGCCCTTTTGGCTGTTGAGAATGTACAGTGCCACATAT
AACACTTGTTTTCTCCGAACGAGTCCGAACGAGTCCGAACGAGTCCGAAC
GAGCAGCGTGCCGTGTAAAGTAAGTAGGTAGGTTTTTCGGGTATAATAGG
AAACCAATACCCTGAATATATGTGAGAAACAACAAGAACAAGACCAAGAA
CAAGAACGACTCAAGTACTTTGAAACTTTCCACTGAATGTAGATGATAAA
CCCTAGCCCTCCCTCCCCTCTCTTGATGCTCTCTTGAGTCTACCCTTCAC
CCTTCACCCTCTGCGTCAGGCTGTCTTTTTGTCTTTTGTCTTTTGTCGCC
TATTGAGTCTGATGAAAGATGAAGATGAAACCAAACACGCGCCACTCCAC
CCATCACCCCGTCCACGACCCACTCGAGATGACTCGAGATGACTCGAGAT
GACTCGAGATGACGCCCCGGGCACACTGTTTTGGTGTAGAGGATCGATCG
ATCGATCGATCTCCTGTGATTTGTGATTTCTCCCACGTTTACCCCGCTGT
CCGATCTTGAACTGTATTGTAGACCAATACACCACGTACTGTATTGCCTA
CCAGGACATCACTGCTCCTGTCGAGAGGACGGGGTTCGGGGACCTTCTGG
AGAAGCTTCTGGCGATCGATCCCGGGAGACGCGCCACAGCAACTGAGGCC
CTTCGTCACCGATTCTTCAAGGACGTGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10436:12156..13135+

>mRNA_A-nodosum_M_contig10436.12.2 ID=mRNA_A-nodosum_M_contig10436.12.2|Name=mRNA_A-nodosum_M_contig10436.12.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig10436:12156..13135+ (Ascophyllum nodosum dioecious)
ATGGAGAAGTGCTTGGGACAGTTTCCGTCGGCGATGCTGACCCAAGCTCC
CCGCAGGGCCGATTTCTTCGACGAGGACACCGGCATGTGCTGGGGCACAA
CCGAGTGTAAGCTCCCACAGCGCTACAACATTTGGCGCATGAGGCGGCTA
CAGAGGACGGGGTTCGGGGACCTTCTGGAGAAGCTTCTGGCGATCGATCC
CGGGAGACGCGCCACAGCAACTGAGGCCCTTCGTCACCGATTCTTCAAGG
ACGTGTAG
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