mRNA_A-nodosum_M_contig10436.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10436.1.1
Unique NamemRNA_A-nodosum_M_contig10436.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10436.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10436contigA-nodosum_M_contig10436:235..3836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866418.541917-CDS-A-nodosum_M_contig10436:234..3381680866418.541917-CDS-A-nodosum_M_contig10436:234..338Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10436 235..338 +
1680866418.5511987-CDS-A-nodosum_M_contig10436:3769..38361680866418.5511987-CDS-A-nodosum_M_contig10436:3769..3836Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10436 3770..3836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10436.1.1prot_A-nodosum_M_contig10436.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10436 235..3836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10436.1.1

>prot_A-nodosum_M_contig10436.1.1 ID=prot_A-nodosum_M_contig10436.1.1|Name=mRNA_A-nodosum_M_contig10436.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
MRTTFIITTADQLVRKVSIQWLSGASEQVAEDRERVRNRWIRRWPPLHYC
PTTTLR*
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mRNA from alignment at A-nodosum_M_contig10436:235..3836+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10436.1.1 ID=mRNA_A-nodosum_M_contig10436.1.1|Name=mRNA_A-nodosum_M_contig10436.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3602bp|location=Sequence derived from alignment at A-nodosum_M_contig10436:235..3836+ (Ascophyllum nodosum dioecious)
ATGCGAACAACTTTCATCATTACCACAGCTGATCAACTGGTCAGAAAAGT
CTCGATTCAATGGCTCAGCGGCGCTTCTGAGCAGGTTGCCGAAGACAGAG
AGAGGTCAGTTCAGTTTGATGGAACAAGTTTCATTTCAAGTACTTGTACT
GAACTTCGGTCGGGCTAGGTGGCTAGGTGTGTGACCCTTTCTCTAATACT
ATTGATACCGTCAATTTTGCAAGGAGATGCCGGTGTGTAGGTCTTTTGTC
TCTTGCCGTGCTTGAACAGCACCGCACGGTAGTACGCTGTAGCACGTATT
CACTACTGTACAAACAGCGACTATGACTGGCGTCCTCGAGAGCGGAAGGA
AGGAGAGTAACCCGTGCCAAGCACCAGATTCGGCCTGGGTGTAGAGAATG
ATCGGGCTGACGTGGGACGGGACGGCCGAACCTATCTCGCGAGACCAAAT
TCTTCGGAGTGAACGGGGGCAGGGCAGGGAAAATTTATTTTATTTTTCCC
TGTTGAGCCAGCTGACCACGAACAGGATTGGCAAGCATGCAGGTCGATGC
AATGCACAATCTGTTTCCATGCTATTAATAGCTACTGGTGCTGTACTTGT
TCCTCAGGTTTCATGCTGGCTGTCTTTAGCTTCACCTGCCATCCTGAGTG
TCAAACTGTACCCGAAGGCTGGGGACGCCCGGCGCAACGGCTGCATACGA
AGTGGGCGCCTCTTGATTCGTGTTGGTGTCCGTTTGCATTGCAACCTCTA
CACGACCAAGTGCTCTCCGCTACCATGGCCCCGAACACCCGCTGTACACT
TGATCCCGATGTCGATGTCGGCGTGATTCGTTTGTCCAGCCTGATGACCT
CGCACGGAAGAGCGGATTCTATGCCACTCGCACGAATTGATCCTCCCAAG
GCAAGGGAAGGGGGGATCAACGATTCTATTACGAAAACATCTGATCAGAC
GCGACAAAGATATCTGTGTGTTTTGTGTTCTTTTCATTAACCGACCGGGC
CTCAACCATACCCAGTAGTATACGCGGTTGCCAATCCGGTACGTGGTCTG
CTGGACAGGAAAAAAAGCGGACCATAGACTACATATTGTACATGCATAGA
CTAGACTACAAACATGGCTCCTGCAAAAGACAAACAGTGCTGTTAGCGAA
AAGTTATCATTATGGTCTATTAGAGAGGGTCAGTACAAGTACTCGCATTG
CGTTTTATCTTCGACCAGTTCCTGGTAAATAGTACATACAGTATTGTACC
GCGCCGCAGATCAGATGCAGCATTAGTCTTATCGAATCACGAGTTCAAAT
GGACCCCAAGTGTCAGCATCAGCATCAGCTCGTCTTACCTCTGATTTCTC
TCGCTCCCCCTCGATGTTCCTCAATCATGGCATGGCACCCAACAAAAGAC
ACGATTTTCTTGAGATACAGTAGGTGTAGTTGCAGGCTCTCCATGAACTC
TTAACTATTACTACACTGCGGGTGAAGATTAAAGATACTCTACTGTTCTC
CATCATCCTCGACTCCCCGTGTCACGGCCAGGTGACGCCTACTTGCTGAA
AAAACTCCCACGCGTTGGGACCTCGGTAAAAATATTTCTACCACAGGCGC
AGCAACCCATATTAGTCAGTGCAGTTCATCAACTACTGCGCAGCTCTCCC
CGTAGCGACTACCCCATTCGAAGGTGAGTTCAAAGTTCGAGAGCGTGCGC
TCAGGCCCGATCCTGGCCAATGTGCACTCGATCCTCGTTTGAACGCCAAA
GTTCTGCGTTTGATAGCTTCGTTGTCTACAAGCCGCCGGTTTCAATTGCT
CGTACTTTGGCCTTCCGAGCTGCTTCGAGCTCCACCGAACGACACGGCGC
GTGTCGTCTCGTCTCGTCGCATCTCGTCTCGTCTCGTCTCGTCGCGTCTC
GTCTCGTCGCCTCTCGTCTCGTCTCGTCTCGTCTCGTCGCCTCTCGTCTC
GTCTCGTCTCGTCTCGTCGCGTCTCGTCTCGTCTCGTCGCGTCTCGTTGC
GTTGCTCTGCTTGCTTGGGGCATGCGCAGACTACCCAGACTGCTATCGAT
CGATCGGTGCGTGTTCGTCCGAGAGGTTTTGATTACCGTTTACCGTTTAA
CGTTGACTAATAATATTAATAGTAGAGTATCTCGTCACCGCCCCCGTTCA
TTCTACACCACAGCAGAATATCTCCGGAGAAGTTAAAAGATGAAGATAGC
GAGCCCAAACAATGGGGCGGAGCAGTGTGGCTGCCCCGGCTGGCCACTGG
TGAGGAAGAGCGAGAGCACTCGTATGAATCGATTATATATTTTGCTACTG
TACATTATTATATTAAATAGCTCTATAGCCTAGAGCTATATATTAATATT
ATTATTACCCTAGATTCAACATAATACAATACAGTGTACTACTATACTGC
TTGATACGGTCTCAAAAAACATCCCGGGAAGGGAAGGGAAAGGAAGGGAG
ACCCTTGTTGATGTTTGTTGCTCAAGGGAAGGGAAACCGGACAGGAGACT
CGGCCCCAGCGCATGTGTGTGTGTGTGTGTTTTCTTCCCCTTTATTCTGG
ACATCAAGTTCTTTGGATATACCAGCCGGGGTAACACATGATTTCACATA
ACCTTCCTTCTGCGGTGCGCGCCTTAATTTTTCTCGCGGGAAGAATTCAG
CCTTTCCTTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTACGAACGAT
TTAGTCTAATCATTCTCCACTGGTTGGGCATTTTTATTTTATTTTATTTT
ATTTTATTGTTTTTAGTGAGAAAAATCCCGTTTACCGGGATCGAACTCAC
GTCCCAGCGTGTCAGAACGGGATCGAACTCACGTCCCAACGTGTCGGAAC
GGGATCGAACTCACGTCCCAACGCGTCAGAAGGTTACGAGGTTACCTCTG
AGCTACCGGGGCGACCGGTAGCATGTGCAAGAAAAAAATCCAATACCTGG
TAAAGGGATTGTGGTGCGCTGCAAGATCAAGAGCACTGCGAGCAGAGGTC
CGATTCCATTCCATTCCCGCTTATGTCCGGTGTGACACGTCAATATCAAT
ATCCTTACGTTAAATGTCTAAATTCTAAATTACGTCCGCCCCCCGTAAAC
GCATTCCCGCTTATGACCGGTGTAAGCAGTTGAAGAAGCTGTGGGAGCAG
CTCACGATGCCGCTCTCCCGCTGCTTTGGTGGCGTCGGTATAGACATCGA
GAGTGACGGCGATGTCAAGAGCGAGAGTGACGGCGATGTCGACAGCGATG
TCGACGACGAGTTCGAAAGCGATGTCGACGACGAATGGGTGAGCTATTTA
ATAATGTTAGTAGTGCACGTACTGTTGCCTTCAGGGGATGGGATTCTCGT
GATGACCGTCCTTGGGCTGTTGGGGATTTTATTTTTTCCTTCATTGGACG
CTTGCTTGCAGCGCTGGTAAAATACAAATACGATAGATAGCGTGGGTTTG
CAGTTTGCCCTGAAAGTAACACGACCTCACAATTCTACTCCATTGTCCCC
GATATCTCCCGACACCTCCGAATCGACCGACGCAGAGTCAGAAATCGCTG
GATTCGGAGATGGCCTCCTCTCCATTATTGCCCGACTACGACGTTGAGGT
GA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10436:235..3836+

>mRNA_A-nodosum_M_contig10436.1.1 ID=mRNA_A-nodosum_M_contig10436.1.1|Name=mRNA_A-nodosum_M_contig10436.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig10436:235..3836+ (Ascophyllum nodosum dioecious)
ATGCGAACAACTTTCATCATTACCACAGCTGATCAACTGGTCAGAAAAGT
CTCGATTCAATGGCTCAGCGGCGCTTCTGAGCAGGTTGCCGAAGACAGAG
AGAGAGTCAGAAATCGCTGGATTCGGAGATGGCCTCCTCTCCATTATTGC
CCGACTACGACGTTGAGGTGA
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