mRNA_A-nodosum_M_contig1042.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1042.17.1
Unique NamemRNA_A-nodosum_M_contig1042.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1042.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1042contigA-nodosum_M_contig1042:142408..148583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size376
Hectar predicted targeting categoryother localisation
Exons2
Cds size198
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866414.2663314-UTR-A-nodosum_M_contig1042:142407..1425341680866414.2663314-UTR-A-nodosum_M_contig1042:142407..142534Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1042 142408..142534 +
1680866414.2960484-UTR-A-nodosum_M_contig1042:148532..1485831680866414.2960484-UTR-A-nodosum_M_contig1042:148532..148583Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1042 148533..148583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866414.2769182-CDS-A-nodosum_M_contig1042:142534..1427051680866414.2769182-CDS-A-nodosum_M_contig1042:142534..142705Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1042 142535..142705 +
1680866414.2853377-CDS-A-nodosum_M_contig1042:148505..1485321680866414.2853377-CDS-A-nodosum_M_contig1042:148505..148532Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1042 148506..148532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1042.17.1prot_A-nodosum_M_contig1042.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1042 142535..148532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1042.17.1

>prot_A-nodosum_M_contig1042.17.1 ID=prot_A-nodosum_M_contig1042.17.1|Name=mRNA_A-nodosum_M_contig1042.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=66bp
MSNHPAPIGEPGSWVRPVPVLVPGDRCWNGWLDTEFSAVINTAPTCFEAL
IACLHLKVRRFGQVA*
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mRNA from alignment at A-nodosum_M_contig1042:142408..148583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1042.17.1 ID=mRNA_A-nodosum_M_contig1042.17.1|Name=mRNA_A-nodosum_M_contig1042.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6176bp|location=Sequence derived from alignment at A-nodosum_M_contig1042:142408..148583+ (Ascophyllum nodosum dioecious)
ATACTCTCTGTCAAGATCCCCCGTTACAGGTTACTGACTGTATCATATGA
CTACAGCAGTGTACTACAGGCACCAGTACACATATTTGTACCAGAGTCGT
GCAGTTTTAGGCGTATGACCGTGACTCATGTCCAATCATCCTGCGCCAAT
CGGTGAGCCTGGAAGTTGGGTGAGGCCCGTGCCCGTGCTTGTCCCTGGAG
ACCGCTGCTGGAATGGCTGGCTGGATACAGAGTTTAGTGCTGTTATTAAT
ACTGCACCTACCTGCTTCGAAGCACTTATTGCTTGCTTACATCTGAAGGT
AAGAGCTTTGCTCACGACGTTACTGCATCGCAGTATAATAAACTGTTCAA
GCCTCTCCCTTTCCGCAAGAAACAGTAGCATTCTCCGGCAATCTCACCTG
CTCTTGACCATCGCCGGGTCTGAACACTTTGTCAAAGGCTCTCTCGCTCC
AAGAGCACCCTACCCGTAGATTCACAGTGTCCTGCTCGCTGACGGCCTGC
TCCCCGCTGGCGCTTTCGCTGAACCGCAGCCAGTCGCGGGAGGAGTCGAG
CGACTCCTCCTCCTGGAAGCACTTGAAGCGGCATAAGACACTCACACGAC
CGTCGGAATCGCCCGGGAGAGTCTGAGCGACTTCGCTCTTCACCGTACCG
TTTGCATCGATGTCGGTGGTATTGGATGAGAGAACTCCTCCTGCCTGATC
TTGACTTGGGATAGCGACTGTTGCAGTCATTGCCACCGGGCTGGGTGTCG
GCGGAGTCGGCAGGATTTCGATACCCGCCGGGCCATGTTCGCCATTAGTC
AGGCAATCGCTGCCTCTGACGCCGTTGCTACCGCAGTCACCACAACTGCT
GTTGTTGCTGCTGACAAACATGCTCGATGCACGCAATGTGTTGGGAGACG
ACAGCGATTTGGCCCGATCGCCGTCGCGGGCAATACCGGCATCGCCGTCA
ATGTCGGCTTCAGTATCACCCGGTCTGGCAGCCAAAGGTGCCTCAGAGGA
GGAGTACGAGGATCGCCTAGAAATAGCCGCTCCGCATTGGGCACTTAGCA
TTCCTTCCGCTCCTGATCTCTCTAATCCACCTTTCCTTGTAGAGAGCTCC
GCCCTGTGCGAGTCGATGGTACTTTGGGCATTGGCAGCTCCCGCGGCGTC
TGGTTCGCTGTTTTCCAAGTCGGTCCCCGAAATCACAGATGGAAGTTTCT
CTGAAACAGACGCTTTCCCCATTGTCCCCAAAGTGCTTGACCCTCGACTC
AATTTATGGGCGTGGTGGTGGCCGCGATCGGCGCGATTCGCCCTATCACC
CTTGCCGTAAGAATAAGCTAGTGCTTCTGATCCCTTTGAAAGCGGAGACT
TGCCTCTGACCATCTCAAAATACGACAACCAGCAACAACACGGGTGCCCT
GAACTCCGGCAAGAGGCGAGTGATACTTGTAATAATGTGAAGAGAAAAAT
GCTTCGTAAAAGTTGGAAGTGACGTCAGAGTGTAAGAGTTGTCTCCCGCA
GAAGTGCTCTTCTCTCAGTCTGTTTTTTTTATGTACCAGTACAACAGAGT
ATACCTCCTACAAGCCGCACGCCGAAAGCTCCAGTACAGGTACTGACTGA
CCTACACAGAGTACTCCGTATTTTATTTACTGTACCGAAAATCTAACGAA
TCGAGGCCAACTGAACAGACTCTAGAATCCTGAATGAAACATATGGCAAA
ATTTCAAATTTCGGCTCTGGGGTGTTTTTCATCGAAAAATAAAAAATACA
GAAATACTGAACCTTGCGACCGCCCGGAGCAGACCAGGGGGACCAGGGGT
CTCTGCCAGATTCATGAATGCTACATAAGGAAAAGCGAGGACAACCTACT
TGCTTTGATTTTGGCGAAAACCTTGAGTACGACTTCGCAACGTCCTTGTG
AGTTGGCGGGTGCGCGCATCATGCCGAAGATGGAACTCTAAACTTATTTT
TAAACGTTGCCAACATCCATGCTCTCTGGGAGGACTCGCCGAGAGTTGAC
TTGTATACCGGTAATGTAATCTCAGTGGTCGCTACTCTCTGTTATGTTAT
GGCGACTATGAACGTACATCTAGACCTTCTGAGCATCCCCCAGTCAGGGG
GAAAAAATGTCAAAACATTTAGGTGATCCATCAATCGCCGGACACCAACC
CAGCACTTGTGTATAAAGAAAAGGCATTTGTTTTTTCTTTTCCTTTCTTT
TTTCAAAATCTTGTCGTTTTTGCCATGTTTTTGCCATGTTTTCCTGTCCA
GCAGACAACGTACCGGATTGGCAACCGCATATATTACTGGGTATAGATCA
ACCGGGTAAGGTTGCCAATCCTGCACGTGGTCATCTGAACAAGGAAAATC
AATATTTCCCTGTCCGCGTTCGTGCCTGAGAATTTGGTCTCGCGAGACGG
GTTCGGCAGTCCCGTCCCGCGTTAGCCTGCTCATCTCCATACTCAGGCTG
AATATGGTGCTCACTTGCGGGATCCCTCCCGAGTTCCGCGGCGGCGTCCA
TTATTTTATTTAAAACTGACATACTACGTCATCGGGTCAGTCCGGAGTTT
ATCGGGTCACGCAAATGCGAACCGATGGCGTTCACTGCCGAGAGTCCGCC
GGCACAGGGCCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTGGCTGGT
GGCTGGACCTTTTCACCATGTTGACCTTTTTCTTGTGGCGATTAACATTG
TTTCTGTTTTCTTATCCATTTTGATGTCGTTGGTGTCCCAGGAGGAAGGT
CACACAGATTTTTGCTCTTGATTTTGGCGATACCAACGAATTAATCGTTC
TCCACCCGTTGGGCAATTTTGGTTTTTTTAGTTTTTAGTGAGAAAAATCC
CGTTTGCCGGGATCGTACGTAAAGGCGAGGGCTTCTCGACCGGTTTGTAC
AGATTATAAAGGCGGGCTGTTGACCTAATGTTACTATTAATATTAATACC
ATCGGGGAACCCGTTTAAATGCCATGAAGAGGTTTCGTATTTCGATTTGC
AGCCCATGATCCCACCTAAACGTTTTGACATTTTTCCCCCTGATGGGGGG
GATGCTCAGAAGGTCTAGGCGTGTTCAGATTTTTCTTTAAACACACAGAA
GGTCTAGATGCGTTCAGATTTTTCTTTAAAACACACACACAGAAAGTCTA
GGCGCGTTCAGATTTTTCTTTAAACACACACAGACACGGTAGACGGGCAG
TACGGGCAGCACTCCAGACAGAAGAAAGAAACTGTAGTTCGTAGCCGAAG
ACATTTAACCGCCTCCGATACTTTCTGTATCAAACATATTATACACTATA
CACTATACACTATACACTATTCATTGTAAAACAAAAATAAAAATGCCCAA
CGGGTGGAGAACGATTAAATCGTTAGTACACAAAATTCGACTTCACGGTC
GACGAGGGAAAGGAATGGCTGAATCCTTCTCGCGAGAAAAATAAAGGCAC
GCACCGCAGAACGAAGGTGGATGAGAAATCCTGTGTGACCTTCCTCCAGT
GTGACCCCGGCTGGTACGTCCAACGAACTTGATGTCTAGAATGAATGGGA
AGAAAACACACTACACACACAGTATTCATTGTGCATGCCAATAACAGTAT
AGTGGGTGCGCGAAGAGTGAGGCGCATAAAAAATTGGTCCATGCATGAAA
CCTGAAAAGGCAGATCTCATTATTGTAACTGCCTTGAGGACTATACTGGC
CTTGTGTCTGTGGACTCACGGCAGCAAACGGCATCGGTACGCATTTGCGT
GACTCGATACGTTTGGGACTGACCTGACTGCGGTTGATGTCATATTTGGA
CGCCGTCGCGAAAAATTGGAGGAATCCCGTGAGTAAGCACCAGATTTAGC
CTGGGTGTGGAGAATGAGCAGGCTGACGTGGGACGGGACGGCCGAACCCG
TCTCGCGAGATCAAATTCTCGGGCGCGAGAACGGGGACAGGGAAATATTC
ATTTTCCCTGGTCAGCTGGCCACGAGCAGGATTGGCAACCCTACCCGGTT
GATCCATACTCTACTGAAAGTACCGACCATACATTATCTTGACGTGTATA
AGTTTCCGGTATTCTCAGGTGATTGGACCTGAGCAAGAATTTTGTCGCAA
TTTTGATCCATGTTGGTTTAGGTAGCGGCTTGTCACCATGATGCCACCCG
TTGACTTTCGTACCTCTTTGTGATGATCACGTTTGGCAACCGCTTACGAA
TTATATTACTGGGTATGGTTGAGGCCCGATCGGTCGATGTGAAGAACACA
CAAAATACCACACGAGGATAGGGATGGGGGCTAGAAGGGGAGCGGGAACG
GGGACGAGAATAAAGATAACGGTGGAGGGGAGAGCGAGCCTGGGAACCTA
CGAAGTAGCTATTATCGAGGTGGATCGGAAGACGCGAGCGTAGGGGCGAC
GCCAGCGAGTAATCAGCAATCACAGCCGCAAGAAGACCCGACGCCCCAGC
GAGACCATCGTCGAAATGGTACCCTTTATGTTAAATCTGAAAGTATAAAA
GGGCTGGCATATAACGTTTCAATGATTGAAATATCATCACTGAGAGCGAG
CATTATTGCGAAATGATTCTGGCTTTCTGAACCTGCTGGGGTTTTTCCGT
TGTACTGACATTTTCGTCGTGTAAAGGAACCAAAGAATCGAGAACGACGA
AATTCTGAATTGAGTTCTTTTTTTAAGACGTTTTTAGCAGTGGATACTAT
TTCCCGCACGTTTTGAATTCAAATGCATGCTGCCTTTTCAGCGCTCATTT
GCGAAGTTAATCTCGTAATTTCGACGGCTGATTTTTAGATTATTTGAAGT
CCACGAGTAGTATCAATTTTCTCTCCTGTTAGTTGGCAAAAAGTCTGACT
GGTGTCTAAAGTTCGAATGCTTTTTGACTCTGATCTTTGGCGGTACGATT
ATCACTGTCTTGTAAAATCTATGTGAGGGTATTCGAGTATATAGATTTTA
CTACGTCAGTGAAGGTAATATTATCACGATAATTCTTCAGAAAGTTGATA
CGTACTACAGCATACCCTTCTTGAGCGTATGCGATGGTGACGGAGATGAT
ACCCCTCTCCTTAGTCTCTCCTCAAGCCTCTTTCGCGGCTCTCCTATGAA
CGGCTTCAATAATTATAATATGTTATTTGTGATAAAATCTCCCACTCATC
AGTGAAGGAGGTCTACGATTGTTTACTGCTCTGTTGTAAATTTGCACAAA
TATTTTGTAAATGTACACTTTCTAATTACATTTTTCGATATCGTTCCGGA
AGGGTGCTCATGAATGATAAAACAGGTTTTAAGGGGAAATGATCTTGTAT
CATAGCCGGGAGCTGGTGCGAGTTTATATTTTTAGAAAAGCGGGGGTTTA
TGGTCTCGGTTTCGAGTCGCAATGCTGAGGTTGTTGTTGTTTATCTCACG
TTAACTGATCTGCTACGAATCCAGCCGTGGTCACAAGATAGACGGAACCA
AACCAAATCAAACCGGTAACACTATGGATAGCGAAATTTGTCTATGAACA
GGAGCAAGCCGACGAGATGCAGCTTCAATGGAGTGCTGAACGACCTGCAT
CGCGTGACCAAACTAAGCGAACTAATAAGAGTGAAGTGGGGGGATATGTG
ACGGGACGATCCCTGATCTCTTGATACCATTACAGGCGCCCGCGGGACTG
GGCGGCAAGGAAACTTAAACACGTTCAACGGAATGGCCCATCGAAAAAAA
CTACCGCAAGATAAAAAATAACTCAAGAAGAGCTGTTTGCATAACTGTTC
ACGGGGATGCCTGAAGCAATGGTTACAAACGTATAACAAAGGACGAAAGC
CGTTGTCAATTTGACTTTGGAGCTATGATACTCCTGCTCTTGCCCTCGTT
GTAGCGTTTCTTTTCGTCTCTCTAAAAGCTCAGTCTTTTTATCTGAACAA
ATAATCGCTATTTATAGGCAGTTCCTTTCCCTTGCACCACAAACGTTTAC
ATATATATCGGGAACAGTTCTATCACGTCTCGGCGGAGAAAAATGCCCGG
TAAATCTCGGGCAGGAACTCGCTCTCAGCACCGCTTGCTACAGCCACCAC
ATCGAAGCCCAGCTCCGAAACCCCTGTAACTTCCGGCAACTCCAACAGGT
CCGCAGGTTCGGGCAAGTCGCTTAGAAACATCTGCACCCGACCGCCGCAG
GCTGGCACCGGCATCTGACCTAATCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1042:142408..148583+

>mRNA_A-nodosum_M_contig1042.17.1 ID=mRNA_A-nodosum_M_contig1042.17.1|Name=mRNA_A-nodosum_M_contig1042.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=198bp|location=Sequence derived from alignment at A-nodosum_M_contig1042:142408..148583+ (Ascophyllum nodosum dioecious)
ATGTCCAATCATCCTGCGCCAATCGGTGAGCCTGGAAGTTGGGTGAGGCC
CGTGCCCGTGCTTGTCCCTGGAGACCGCTGCTGGAATGGCTGGCTGGATA
CAGAGTTTAGTGCTGTTATTAATACTGCACCTACCTGCTTCGAAGCACTT
ATTGCTTGCTTACATCTGAAGGTCCGCAGGTTCGGGCAAGTCGCTTAG
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