mRNA_A-nodosum_M_contig1041.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1041.4.1
Unique NamemRNA_A-nodosum_M_contig1041.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1041.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1041contigA-nodosum_M_contig1041:73558..76179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size615
Hectar predicted targeting categoryother localisation
Exons2
Cds size615
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866413.659073-CDS-A-nodosum_M_contig1041:73557..740941680866413.659073-CDS-A-nodosum_M_contig1041:73557..74094Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1041 73558..74094 +
1680866413.672145-CDS-A-nodosum_M_contig1041:76101..761791680866413.672145-CDS-A-nodosum_M_contig1041:76101..76179Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1041 76102..76179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1041.4.1prot_A-nodosum_M_contig1041.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1041 73558..76179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1041.4.1

>prot_A-nodosum_M_contig1041.4.1 ID=prot_A-nodosum_M_contig1041.4.1|Name=mRNA_A-nodosum_M_contig1041.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=205bp
LPSNNEPQIAKTGQGTEGRMNARGQLRKMGQGNLELDSPVDRKTGRRSSQ
QELSPQRTSRRTCSVSSSGGDGDRILKRRVSFHASVEVVLVPTRHELKSK
ELGEDVAGEPGHKNDSDNGIWWTVSDCFGFRKAYRRQLIASGVKCTSLLC
PTSVVFLIGAEDDDEDVGNEEKSSCEVREVRHSRRNKSSNGTGTPKGRRR
RQKHV
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mRNA from alignment at A-nodosum_M_contig1041:73558..76179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1041.4.1 ID=mRNA_A-nodosum_M_contig1041.4.1|Name=mRNA_A-nodosum_M_contig1041.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2622bp|location=Sequence derived from alignment at A-nodosum_M_contig1041:73558..76179+ (Ascophyllum nodosum dioecious)
CTCCCATCAAATAATGAACCACAGATAGCAAAAACCGGTCAGGGCACTGA
AGGCCGAATGAACGCACGGGGTCAACTTCGAAAAATGGGACAAGGAAATC
TAGAACTGGATTCCCCTGTCGACAGGAAGACGGGCCGGAGGTCCTCGCAG
CAGGAATTGTCGCCGCAACGAACGAGCAGAAGAACCTGTAGTGTTAGCAG
CTCTGGTGGCGACGGTGACAGAATCCTCAAACGGAGGGTCAGCTTCCACG
CCAGCGTCGAGGTCGTCCTTGTGCCCACCAGGCACGAGCTGAAAAGTAAG
GAGCTTGGAGAGGACGTGGCCGGTGAGCCGGGACATAAGAACGACAGCGA
CAACGGTATCTGGTGGACGGTGAGCGACTGCTTCGGGTTCCGCAAGGCGT
ACCGGCGCCAACTAATCGCGTCGGGGGTGAAATGTACGTCACTGCTTTGC
CCTACTAGCGTTGTCTTCCTGATCGGAGCTGAGGACGACGACGAGGATGT
GGGGAATGAAGAGAAATCCAGCTGCGAAGTCAGAGAGGTATGTAGAGCCG
TTCCGAGTGCAGCTGCATGCCTCTCCTGGGTATCGCCGACGCTGCTGTAT
AGCGTGCAGCACCGGGGAAATCCGTAGTCTACTGTTCCTTTTCGGGGAAT
GGCCCTTCAAAGTTTTCATCCAAGTCGGATTTTTCGTCAGAGCTGGAGAC
GGTTGGTCCTTTGCATTCGTGTCGTTGTACAAGACAGTAGTACGGAGTAT
ACTGCACAACCAGTAAGGTAGTGTACTCGTACTTACCTTTTGTACTATGA
ACAACAATATACTGTACTGTATGTATAGTCACACATATAGTAAGAGCATA
GATAAACCGGGTAAGGTTGCCAATCCTGCACGTGGTCTGCTGAACATGGA
AAATTAATACCAGGTATTTCCCTGTCCGCGTTCGTGTTTGAGAATTTGGT
CTCGCGAGACGGGTCCGGCAGTCCCGTACCGCGTCAGCCTGCTCATCTCC
ATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTTCTCCCGAGTTCCG
CGGCGGCGTCCATTTATTCATTTATAACTGCCATACGCCATCGGGTCAGT
CCCGAGTTTATCGGATCACGCAATTGCGTACCGATGGCGTTCACTGCCGA
GAGTCCGCCGGCACGGAGCCAGTAAACCTCAATGTAGTTCCGAACGAGTG
CTGCCTTGGCAGGTCGCCATGGACCAATTAATATTCGTCCCTCTTTCCCA
CACCCACTATTGGTATGAAGTGCGCATGTTGAAAGTACCGGCGGGACATA
CAACTGCAACTGTACTGGACATAAAACTACAACTACTGCAAAGTCAGACC
TCCAGATTAAATGGGATGACAACGCACACACAACACAGATATTCTCCACA
CACAGATTTTGCTTAACTTCAAACTATCAAATATCCTTCCTCGTACAGGT
ACAAAGCGTTTGCTGCGCTGTTCTTCAAGGAAAAATACGAACGCGTCTAA
CAAATAACTACTTTGCGTGAACCTCGTGAGCAGTACCGTACGGAGCATAC
AGTAAGTTAGTTGCTATATTCACTCGTACGTGAGTTTGTAAATAATACTG
CACTACTGTAGTGGACATTCAACTGGACAATCCTGTGTGACCCTCCTCCC
TGTGTGACCCCGGCTGGTACGTCCACAAACCTGGCGTCTAGAATAAATGG
GAAAATAATACATGCAACTACAACAGCACTACTACTAGTCTAGAGCTCTG
ATGTTCTCTCTGATGTATTACAGCTAATACTGTACTGCATTCTCTCCACA
GCACAGATTGTGCTCAACTTCAAACTACCCCTTCTCGTACAGGTACAAAG
ACAAAGCATTTGCTGCGCTGTTCTTCAAATAAAAATACGAACGCGTCCAC
CATTAGTACAATAATTACGTGAACCTTGTGAGCATCCAATCAGTGAGGGT
GGAAATTGCCAAAACGGTTAGATGGGAACATTGGCCTCTCGTGATTATTG
AAGGGTTATGCTCCCCTAAACGCTAAAAGCACTCTCTCTCACCCGTGTGT
ACAGTACCGGCGTTTCAGTACCGCAGCATTACTGTAGTTGAAAGTCTAAA
TGAATATCGCTACTGCTGTACTTCACGAACTTCACGATACAAGCATGTAG
TGTGCGACTTGTGCTACAACAGTTAAATCAGTAAAATGCTAGAGCGATAG
TCGTACGTAGGTGTATAGAGCTTTCGATATACCTGGTAGACGGAACTACA
GCAGTAGTAGTAGTCTAGTATCAACACTTTGTTTCTTCATTTGCTTCCTT
TTGGCGGGGTGTTGTTTGTTGTTGTTTTGTCTTGACATTAAAAACCGTTC
TGACCTCTCAGCTCTGTCCAGCACCTTTTCTTTCTCTTACTCTTGAAGGC
AAAGAAATGAATTTCCGTGGTCACAAGCTACAGAAAAAAAGAACGTCGAA
ACACGCCAGAATTACTCTTAACTGCTGTACTGCCTGCGACCATCTTTTCC
CTTGTGATGCGTACGTGGTACCACGTTTTTTCGACCTGATCCAGGTTCGG
CATTCTAGAAGGAACAAAAGCTCTAACGGCACAGGCACGCCTAAGGGGAG
GCGGAGGAGGCAGAAGCATGTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1041:73558..76179+

>mRNA_A-nodosum_M_contig1041.4.1 ID=mRNA_A-nodosum_M_contig1041.4.1|Name=mRNA_A-nodosum_M_contig1041.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=615bp|location=Sequence derived from alignment at A-nodosum_M_contig1041:73558..76179+ (Ascophyllum nodosum dioecious)
CTCCCATCAAATAATGAACCACAGATAGCAAAAACCGGTCAGGGCACTGA
AGGCCGAATGAACGCACGGGGTCAACTTCGAAAAATGGGACAAGGAAATC
TAGAACTGGATTCCCCTGTCGACAGGAAGACGGGCCGGAGGTCCTCGCAG
CAGGAATTGTCGCCGCAACGAACGAGCAGAAGAACCTGTAGTGTTAGCAG
CTCTGGTGGCGACGGTGACAGAATCCTCAAACGGAGGGTCAGCTTCCACG
CCAGCGTCGAGGTCGTCCTTGTGCCCACCAGGCACGAGCTGAAAAGTAAG
GAGCTTGGAGAGGACGTGGCCGGTGAGCCGGGACATAAGAACGACAGCGA
CAACGGTATCTGGTGGACGGTGAGCGACTGCTTCGGGTTCCGCAAGGCGT
ACCGGCGCCAACTAATCGCGTCGGGGGTGAAATGTACGTCACTGCTTTGC
CCTACTAGCGTTGTCTTCCTGATCGGAGCTGAGGACGACGACGAGGATGT
GGGGAATGAAGAGAAATCCAGCTGCGAAGTCAGAGAGGTTCGGCATTCTA
GAAGGAACAAAAGCTCTAACGGCACAGGCACGCCTAAGGGGAGGCGGAGG
AGGCAGAAGCATGTT
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