mRNA_A-nodosum_M_contig104.65.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig104.65.1
Unique NamemRNA_A-nodosum_M_contig104.65.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig104.65.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.230e-17
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    7 ERGTTYGGDGNDRIVMQAFVDSDHATCLDTRRSTSGGTVLLGGGAISWFSRGQATTAEGTSEAEYVAMSEIVKDVLCLRQVQAFIMP 267
            ERG   G      + MQ FVD+D+A+    RRS SGG V+ GGG ++WFSR Q      T+EAEYVA+++++K+VL LRQV  F++P
Sbjct:    6 ERGVVTG------MSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLP 86
[Close]
BLAST of mRNA_A-nodosum_M_contig104.65.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.700e-16
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    7 ERGTTYGGDGNDRIVMQAFVDSDHATCLDTRRSTSGGTVLLGGGAISWFSRGQATTAEGTSEAEYVAMSEIVKDVLCLRQVQAFIMPSLESN 282
            ERG   G      I MQ F+D+D+A+    RRS SGG V+ GGG ++WFSR Q      T+EAEYVA+++++K+VL LRQV  F++P   +N
Sbjct: 1255 ERGVVTG------ISMQVFLDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAATN 1340
[Close]
BLAST of mRNA_A-nodosum_M_contig104.65.1 vs. uniprot
Match: A0A6H5LB33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB33_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.920e-16
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:   46 IVMQAFVDSDHATCLDTRRSTSGGTVLLGGGAISWFSRGQATTAEGTSEAEYVAMSEIVKDVLCLRQVQAFIMPSL 273
            + +Q + D+D A+    RRS SGG V  GGGA+SWFSR Q      T+EAEYVA+ ++VK++L LRQ+  F++P +
Sbjct:   25 LSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQV 100
[Close]
BLAST of mRNA_A-nodosum_M_contig104.65.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.440e-16
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    7 ERGTTYGGDGNDRIVMQAFVDSDHATCLDTRRSTSGGTVLLGGGAISWFSRGQATTAEGTSEAEYVAMSEIVKDVLCLRQVQAFIMP 267
            ERG   G      + MQ FVD+D+A+    RRS SGG V+ GGG ++WFSR Q      T+EAEYVA+++++K+VL LRQV  F++P
Sbjct:  158 ERGVVTG------MSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLP 238
[Close]
BLAST of mRNA_A-nodosum_M_contig104.65.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.730e-16
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:    7 ERGTTYGGDGNDRIVMQAFVDSDHATCLDTRRSTSGGTVLLGGGAISWFSRGQATTAEGTSEAEYVAMSEIVKDVLCLRQVQAFIMPSL 273
            +RGT  G        +Q + D+D A+    RRS SGG V  GGGA+SWFSR Q      T+EAEYVA+ ++VK++L LRQ+  F++P +
Sbjct:   18 QRGTVEG------FSLQVYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQV 100
[Close]
BLAST of mRNA_A-nodosum_M_contig104.65.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.290e-16
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    7 ERGTTYGGDGNDRIVMQAFVDSDHATCLDTRRSTSGGTVLLGGGAISWFSRGQATTAEGTSEAEYVAMSEIVKDVLCLRQVQAFIMPS--LESNPV 288
            +RGT  G      + +Q + D+D A+    RRS SGG V  GGGA+SWFSR Q      T+EAEYVA+ ++VK++L LRQ+  F++P   +  NPV
Sbjct:  163 QRGTVEG------LSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCNPV 252
[Close]
BLAST of mRNA_A-nodosum_M_contig104.65.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 5.210e-16
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    7 ERGTTYGGDGNDRIVMQAFVDSDHATCLDTRRSTSGGTVLLGGGAISWFSRGQATTAEGTSEAEYVAMSEIVKDVLCLRQVQAFIMP 267
            ERG   G      + MQ FVD+D+A+    RRS SGG V+ GGG ++WFSR Q      T+EAEYVA+++++K+VL LRQV  F++P
Sbjct:  213 ERGVVTG------MSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLP 293
[Close]
BLAST of mRNA_A-nodosum_M_contig104.65.1 vs. uniprot
Match: A0A6H5K0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C0_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.410e-16
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    7 ERGTTYGGDGNDRIVMQAFVDSDHATCLDTRRSTSGGTVLLGGGAISWFSRGQATTAEGTSEAEYVAMSEIVKDVLCLRQVQAFIMP 267
            ERG   G      + MQ FVD+D+A+    RRS SGG V+ GGG ++WFSR Q      T+EAEYVA+++++K+VL LRQV  F++P
Sbjct:   50 ERGVVTG------MSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLP 130
[Close]
BLAST of mRNA_A-nodosum_M_contig104.65.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.870e-16
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    7 ERGTTYGGDGNDRIVMQAFVDSDHATCLDTRRSTSGGTVLLGGGAISWFSRGQATTAEGTSEAEYVAMSEIVKDVLCLRQVQAFIMPSLES 279
            ERG   G      + MQ FVD+D+A+    RRS SGG V+ GGG ++WFSR Q      T+EAEYVA+++++K+VL LRQV  F++P   S
Sbjct: 1185 ERGVVTG------MSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGS 1269
[Close]
BLAST of mRNA_A-nodosum_M_contig104.65.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.670e-16
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    7 ERGTTYGGDGNDRIVMQAFVDSDHATCLDTRRSTSGGTVLLGGGAISWFSRGQATTAEGTSEAEYVAMSEIVKDVLCLRQVQAFIMP 267
            ERG   G      + MQ FVD+D+A+    RRS SGG V+ GGG ++WFSR Q      T+EAEYVA+++++K+VL LRQV  F++P
Sbjct:  275 ERGVVTG------MSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLP 355
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig104.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTT9_9PHAE4.230e-1748.28Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKY9_9PHAE1.700e-1646.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LB33_9PHAE1.920e-1647.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE3.440e-1648.28Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI51_9PHAE3.730e-1644.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLT9_9PHAE4.290e-1644.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE5.210e-1648.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0C0_9PHAE5.410e-1648.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU31_9PHAE5.870e-1647.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JEF2_9PHAE6.670e-1648.28Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig104contigA-nodosum_M_contig104:557459..557756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42374.XP_002422367.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size299
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.52e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,3RTT4@4891|Saccharomycetes,47E39@766764|Debaryomycetaceae
DescriptionTransposable element
Cds size297
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866411.6082935-CDS-A-nodosum_M_contig104:557459..5577561680866411.6082935-CDS-A-nodosum_M_contig104:557459..557756Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig104 557460..557756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig104.65.1prot_A-nodosum_M_contig104.65.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig104 557460..557756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig104.65.1

>prot_A-nodosum_M_contig104.65.1 ID=prot_A-nodosum_M_contig104.65.1|Name=mRNA_A-nodosum_M_contig104.65.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=99bp
APERGTTYGGDGNDRIVMQAFVDSDHATCLDTRRSTSGGTVLLGGGAISW
FSRGQATTAEGTSEAEYVAMSEIVKDVLCLRQVQAFIMPSLESNPVGIV
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mRNA from alignment at A-nodosum_M_contig104:557459..557756-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig104.65.1 ID=mRNA_A-nodosum_M_contig104.65.1|Name=mRNA_A-nodosum_M_contig104.65.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=298bp|location=Sequence derived from alignment at A-nodosum_M_contig104:557459..557756- (Ascophyllum nodosum dioecious)
GCCCCGGAAAGGGGGACGACCTACGGCGGAGACGGGAACGACCGGATAGT
AATGCAAGCATTCGTCGATTCAGACCATGCTACGTGTCTGGACACAAGAC
GATCGACTTCAGGTGGGACGGTACTTTTGGGCGGTGGCGCTATCAGCTGG
TTTTCGAGGGGTCAGGCGACCACCGCGGAGGGAACTTCGGAGGCAGAGTA
CGTGGCTATGTCGGAGATCGTGAAGGATGTACTATGTCTCCGTCAGGTAC
AGGCCTTTATCATGCCTTCCCTCGAGAGTAACCCCGTCGGCATCGTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig104:557459..557756-

>mRNA_A-nodosum_M_contig104.65.1 ID=mRNA_A-nodosum_M_contig104.65.1|Name=mRNA_A-nodosum_M_contig104.65.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig104:557459..557756- (Ascophyllum nodosum dioecious)
GCCCCGGAAAGGGGGACGACCTACGGCGGAGACGGGAACGACCGGATAGT
AATGCAAGCATTCGTCGATTCAGACCATGCTACGTGTCTGGACACAAGAC
GATCGACTTCAGGTGGGACGGTACTTTTGGGCGGTGGCGCTATCAGCTGG
TTTTCGAGGGGTCAGGCGACCACCGCGGAGGGAACTTCGGAGGCAGAGTA
CGTGGCTATGTCGGAGATCGTGAAGGATGTACTATGTCTCCGTCAGGTAC
AGGCCTTTATCATGCCTTCCCTCGAGAGTAACCCCGTCGGCATCGTG
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