mRNA_A-nodosum_M_contig104.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig104.13.1
Unique NamemRNA_A-nodosum_M_contig104.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig104.13.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 69.3 bits (168), Expect = 1.130e-12
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   70 TWTLRQDHYPKLRTVEHWVLLRIIGTQRK-RPDHRMASYNHALETTRCENIETTLR 234
            TWTL  DH+ KLR+  H VLLR+IG QR+ R DH   SY  AL  TRCE+IETT+R
Sbjct:   16 TWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIR 71
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig104.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001AA1A1FE1.130e-1260.71hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig104contigA-nodosum_M_contig104:188530..188788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size261
Hectar predicted targeting categoryother localisation
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866409.1700351-CDS-A-nodosum_M_contig104:188529..1887871680866409.1700351-CDS-A-nodosum_M_contig104:188529..188787Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig104 188530..188787 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866409.178811-UTR-A-nodosum_M_contig104:188787..1887881680866409.178811-UTR-A-nodosum_M_contig104:188787..188788Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig104 188788..188788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig104.13.1prot_A-nodosum_M_contig104.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig104 188530..188787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig104.13.1

>prot_A-nodosum_M_contig104.13.1 ID=prot_A-nodosum_M_contig104.13.1|Name=mRNA_A-nodosum_M_contig104.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
HRLPHLNHNTSAQAPWSSDFDRSTWTLRQDHYPKLRTVEHWVLLRIIGTQ
RKRPDHRMASYNHALETTRCENIETTLRVLLIEDF*
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mRNA from alignment at A-nodosum_M_contig104:188530..188788+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig104.13.1 ID=mRNA_A-nodosum_M_contig104.13.1|Name=mRNA_A-nodosum_M_contig104.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=259bp|location=Sequence derived from alignment at A-nodosum_M_contig104:188530..188788+ (Ascophyllum nodosum dioecious)
CATCGCCTGCCCCATCTGAACCATAACACGTCAGCACAAGCCCCGTGGAG
CTCGGATTTCGATCGTAGTACATGGACTCTCCGCCAGGACCACTACCCCA
AACTCCGCACCGTAGAGCACTGGGTCTTGCTTCGCATTATCGGGACTCAG
CGCAAGAGACCAGACCATCGGATGGCCTCGTATAATCATGCCCTCGAGAC
AACCCGCTGTGAAAACATAGAGACAACGTTGCGCGTACTATTAATAGAAG
ATTTTTGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig104:188530..188788+

>mRNA_A-nodosum_M_contig104.13.1 ID=mRNA_A-nodosum_M_contig104.13.1|Name=mRNA_A-nodosum_M_contig104.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig104:188530..188788+ (Ascophyllum nodosum dioecious)
CATCGCCTGCCCCATCTGAACCATAACACGTCAGCACAAGCCCCGTGGAG
CTCGGATTTCGATCGTAGTACATGGACTCTCCGCCAGGACCACTACCCCA
AACTCCGCACCGTAGAGCACTGGGTCTTGCTTCGCATTATCGGGACTCAG
CGCAAGAGACCAGACCATCGGATGGCCTCGTATAATCATGCCCTCGAGAC
AACCCGCTGTGAAAACATAGAGACAACGTTGCGCGTACTATTAATAGAAG
ATTTTTGA
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