mRNA_A-nodosum_M_contig10397.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10397.1.1
Unique NamemRNA_A-nodosum_M_contig10397.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10397.1.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.180e-26
Identity = 62/92 (67.39%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    1 ELRLYMAEDVQPEETAFSLLKFWKRR---RT---------GMPFLALIARLYIRIESTSCQAERNFSALAFLIGHLRSTSAPGKVERLMFLR 240
            ELR+Y+AED   EE  FSLL+FW+RR   RT         G+P LALIARL+  IESTSCQAERNFSALAFLIG LRS+  PGKVERLMFLR
Sbjct:  370 ELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLR 461
[Close]
BLAST of mRNA_A-nodosum_M_contig10397.1.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 5.000e-26
Identity = 62/92 (67.39%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    1 ELRLYMAEDVQPEETAFSLLKFWKRR---RT---------GMPFLALIARLYIRIESTSCQAERNFSALAFLIGHLRSTSAPGKVERLMFLR 240
            ELR+Y+AED   EE  FSLL+FW+RR   RT         G+P LALIARL+  IESTSCQAERNFSALAFLIG LRS+  PGKVERLMFLR
Sbjct:  698 ELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLR 789
[Close]
BLAST of mRNA_A-nodosum_M_contig10397.1.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.840e-19
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:    1 ELRLYMAEDVQPEETAFSLLKFWKRRRTG--------------MPFLALIARLYIRIESTSCQAERNFSALAFLIGHLRSTSAPGKVERLMFLR 240
            E+ +Y+AE+ Q +   F++L +W RR T               MP+LA IARLY+ IE+TSCQAERNFSALA LIG LR    P KVER+MF+R
Sbjct:  512 EVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIR 605
[Close]
BLAST of mRNA_A-nodosum_M_contig10397.1.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.870e-19
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:    1 ELRLYMAEDVQPEETAFSLLKFWKRRRTG--------------MPFLALIARLYIRIESTSCQAERNFSALAFLIGHLRSTSAPGKVERLMFLR 240
            E+ +Y+AE+ Q +   F++L +W RR T               MP+LA IARLY+ IE+TSCQAERNFSALA LIG LR    P KVER+MF+R
Sbjct:  707 EVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIR 800
[Close]
BLAST of mRNA_A-nodosum_M_contig10397.1.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 8.500e-18
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 ELRLYMAEDVQPEETAFSLLKFWKRRRTG--------------MPFLALIARLYIRIESTSCQAERNFSALAFLIGHLRSTSAPGKVERLMFLR 240
            E+ +Y+AE  Q +   F+L+ FW RR T               MP+LA IARL++ IE+TSCQAERNFSALA LIG+LR    P +VER+M +R
Sbjct:  404 EMLVYLAEQPQLDVDGFNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIR 497
[Close]
BLAST of mRNA_A-nodosum_M_contig10397.1.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 8.630e-18
Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 ELRLYMAEDVQPEETAFSLLKFWKRRRTG--------------MPFLALIARLYIRIESTSCQAERNFSALAFLIGHLRSTSAPGKVERLMFLR 240
            E+ +Y+AE  Q E   F++L FW RR T               MP+LA IARL++ IE++SCQAERNFSAL+ LIGHLR      KVER+M +R
Sbjct:  130 EVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIR 223
[Close]
BLAST of mRNA_A-nodosum_M_contig10397.1.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.190e-17
Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 ELRLYMAEDVQPEETAFSLLKFWKRRRTG--------------MPFLALIARLYIRIESTSCQAERNFSALAFLIGHLRSTSAPGKVERLMFLR 240
            E+ +Y+AE  Q E   F++L FW RR T               MP+LA IARL++ IE++SCQAERNFSAL+ LIGHLR      KVER+M +R
Sbjct:  695 EVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIR 788
[Close]
BLAST of mRNA_A-nodosum_M_contig10397.1.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 8.160e-17
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 ELRLYMAEDVQPEETAFSLLKFWKRRRTG--------------MPFLALIARLYIRIESTSCQAERNFSALAFLIGHLRSTSAPGKVERLMFLR 240
            E+ +Y+AE  Q +   F+LL FW RR T               MP+LA IARL++ IE+TSCQAERNFSALA LIG  R      +VER+M +R
Sbjct:  125 EMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVR 218
[Close]
BLAST of mRNA_A-nodosum_M_contig10397.1.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.030e-16
Identity = 46/94 (48.94%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 ELRLYMAEDVQPEETAFSLLKFWKRRRTG--------------MPFLALIARLYIRIESTSCQAERNFSALAFLIGHLRSTSAPGKVERLMFLR 240
            E+ +Y+AE  Q +   F+L+ FW RR T               MP+LA IARL++ IE+TSCQAERNFSALA LIG LR      KVER+M +R
Sbjct:  390 EVLVYLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIR 483
[Close]
BLAST of mRNA_A-nodosum_M_contig10397.1.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.380e-15
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 ELRLYMAEDVQPEETAFSLLKFWKRRRTG--------------MPFLALIARLYIRIESTSCQAERNFSALAFLIGHLRSTSAPGKVERLMFLR 240
            E+ +Y+AE  Q +   F+LL FW RR T               MP+LA IARL++ IE+TSCQAERNFSALA LIG L       +VER+M +R
Sbjct:  508 EMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVR 601
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10397.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE3.180e-2667.39Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE5.000e-2667.39Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JTB8_9PHAE2.840e-1951.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE2.870e-1951.06Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JXV5_9PHAE8.500e-1848.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJT6_9PHAE8.630e-1848.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE4.190e-1748.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE8.160e-1747.87Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE1.030e-1648.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE2.380e-1547.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10397contigA-nodosum_M_contig10397:3710..3949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog215358.XP_010742928.1
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size240
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.35e-06
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,39RW9@33154|Opisthokonta,3BH13@33208|Metazoa,3D40F@33213|Bilateria,48425@7711|Chordata,4931H@7742|Vertebrata,4A6M4@7898|Actinopterygii
DescriptionZinc finger BED domain-containing protein 1-like
Cds size225
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866408.0491874-UTR-A-nodosum_M_contig10397:3709..37241680866408.0491874-UTR-A-nodosum_M_contig10397:3709..3724Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10397 3710..3724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866408.0590937-CDS-A-nodosum_M_contig10397:3724..39491680866408.0590937-CDS-A-nodosum_M_contig10397:3724..3949Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10397 3725..3949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10397.1.1prot_A-nodosum_M_contig10397.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10397 3725..3949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10397.1.1

>prot_A-nodosum_M_contig10397.1.1 ID=prot_A-nodosum_M_contig10397.1.1|Name=mRNA_A-nodosum_M_contig10397.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
MAEDVQPEETAFSLLKFWKRRRTGMPFLALIARLYIRIESTSCQAERNFS
ALAFLIGHLRSTSAPGKVERLMFLR
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mRNA from alignment at A-nodosum_M_contig10397:3710..3949+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10397.1.1 ID=mRNA_A-nodosum_M_contig10397.1.1|Name=mRNA_A-nodosum_M_contig10397.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig10397:3710..3949+ (Ascophyllum nodosum dioecious)
GAGCTGCGGTTGTACATGGCGGAAGACGTGCAACCCGAGGAGACCGCCTT
TTCGCTTCTAAAGTTCTGGAAGCGTAGGAGGACAGGAATGCCGTTTTTGG
CGCTCATCGCCCGGCTTTACATCAGGATTGAGTCTACCAGCTGCCAGGCG
GAGAGGAACTTcTCAGCCCtTGCCTTCCTTATCGGCCACCTGCGCAGCAC
GTCCGCACCCGGCAAGGTCGAGCGACTGATGTTCCTGCGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10397:3710..3949+

>mRNA_A-nodosum_M_contig10397.1.1 ID=mRNA_A-nodosum_M_contig10397.1.1|Name=mRNA_A-nodosum_M_contig10397.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig10397:3710..3949+ (Ascophyllum nodosum dioecious)
ATGGCGGAAGACGTGCAACCCGAGGAGACCGCCTTTTCGCTTCTAAAGTT
CTGGAAGCGTAGGAGGACAGGAATGCCGTTTTTGGCGCTCATCGCCCGGC
TTTACATCAGGATTGAGTCTACCAGCTGCCAGGCGGAGAGGAACTTcTCA
GCCCtTGCCTTCCTTATCGGCCACCTGCGCAGCACGTCCGCACCCGGCAA
GGTCGAGCGACTGATGTTCCTGCGC
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