mRNA_A-nodosum_M_contig10380.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10380.2.1
Unique NamemRNA_A-nodosum_M_contig10380.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10380.2.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 4.460e-5
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:  136 GRSIVSGVLLDPS-IYPPGDSTLPDPISHWYGYSASHK*LFGTTTLFVFRPLLMDIKSM 309
            GR+ V+GV+     +Y PG   L DPI  + GY+ SHK LFG+  L VFR LL  + +M
Sbjct:  432 GRAHVTGVVRQRGGLYGPGALPLKDPIKDYTGYTGSHKGLFGSVQLIVFRGLLASVGAM 490
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10380.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K953_9PHAE4.460e-545.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10380contigA-nodosum_M_contig10380:10627..11260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size309
Hectar predicted targeting categoryother localisation
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866407.7493985-CDS-A-nodosum_M_contig10380:10626..107201680866407.7493985-CDS-A-nodosum_M_contig10380:10626..10720Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10380 10627..10720 +
1680866407.7619538-CDS-A-nodosum_M_contig10380:11045..112001680866407.7619538-CDS-A-nodosum_M_contig10380:11045..11200Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10380 11046..11200 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866407.7704356-UTR-A-nodosum_M_contig10380:11200..112601680866407.7704356-UTR-A-nodosum_M_contig10380:11200..11260Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10380 11201..11260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10380.2.1prot_A-nodosum_M_contig10380.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10380 10627..11200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10380.2.1

>prot_A-nodosum_M_contig10380.2.1 ID=prot_A-nodosum_M_contig10380.2.1|Name=mRNA_A-nodosum_M_contig10380.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
MRSRKYQDRVQKESTKLPRGSTTAKKLSTKTEPFGLRSFTVYGKDGRSIV
SGVLLDPSIYPPGDSTLPDPISHWYGYSASHK*
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mRNA from alignment at A-nodosum_M_contig10380:10627..11260+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10380.2.1 ID=mRNA_A-nodosum_M_contig10380.2.1|Name=mRNA_A-nodosum_M_contig10380.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=634bp|location=Sequence derived from alignment at A-nodosum_M_contig10380:10627..11260+ (Ascophyllum nodosum dioecious)
ATGCGCTCGCGCAAGTATCAGGACCGCGTGCAAAAGGAGTCGACTAAGCT
ACCGAGAGGTAGCACTACCGCGAAGAAACTCTCGACGAAAACAGGTGTCA
ATGTCATGGATCTTGAAGCACCACGGTCTCCTGTTATTGATCTCATCACG
ACAGGGGAATCTGCGCGAGTTGCCGTCGCGGAGATCTTGCACCTCGACCC
CTTGGTATGTCAGGTGTCCCCTGAGGCCCCTACACTTGTCGTGAAGGATC
TTGGAGGATACTGCGGAAGAGAAAAGTTGACATGAAACACACTTTGCGCC
ATGGATACGTTTTTCGACAAAAAAACGTATTATCGGGGTTGGTTGTGATC
AAGTGCAAACCATTCGCGCACTTAGATGCCCCTTCCCCATCCCTTCCCTT
TTGACGTGCTTCGCCGCAGAACCATTTGGGCTTCGTTCTTTCACGGTTTA
TGGCAAGGACGGGCGATCCATCGTGTCGGGAGTCCTGCTTGACCCCTCTA
TCTACCCACCTGGGGATTCTACGCTGCCGGATCCCATCTCCCATTGGTAT
GGATACTCCGCTTCGCACAAATGACTGTTTGGCACGACCACGTTGTTCGT
TTTTAGGCCACTGCTGATGGACATCAAGAGCATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10380:10627..11260+

>mRNA_A-nodosum_M_contig10380.2.1 ID=mRNA_A-nodosum_M_contig10380.2.1|Name=mRNA_A-nodosum_M_contig10380.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig10380:10627..11260+ (Ascophyllum nodosum dioecious)
ATGCGCTCGCGCAAGTATCAGGACCGCGTGCAAAAGGAGTCGACTAAGCT
ACCGAGAGGTAGCACTACCGCGAAGAAACTCTCGACGAAAACAGAACCAT
TTGGGCTTCGTTCTTTCACGGTTTATGGCAAGGACGGGCGATCCATCGTG
TCGGGAGTCCTGCTTGACCCCTCTATCTACCCACCTGGGGATTCTACGCT
GCCGGATCCCATCTCCCATTGGTATGGATACTCCGCTTCGCACAAATGA
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