mRNA_A-nodosum_M_contig1038.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1038.7.1
Unique NamemRNA_A-nodosum_M_contig1038.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1038.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1038contigA-nodosum_M_contig1038:11123..12462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5346.XP_001830943.1
Model size321
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons4
Evalue0.000886
EggNOG OGs2CY2J@1|root,2S1HF@2759|Eukaryota,3AIB2@33154|Opisthokonta,3PB7J@4751|Fungi,3V4R7@5204|Basidiomycota,226FJ@155619|Agaricomycetes,3W93G@5338|Agaricales
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866406.7057714-CDS-A-nodosum_M_contig1038:11122..111551680866406.7057714-CDS-A-nodosum_M_contig1038:11122..11155Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 11123..11155 -
1680866406.7275681-CDS-A-nodosum_M_contig1038:11850..119641680866406.7275681-CDS-A-nodosum_M_contig1038:11850..11964Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 11851..11964 -
1680866406.7362137-CDS-A-nodosum_M_contig1038:11973..120281680866406.7362137-CDS-A-nodosum_M_contig1038:11973..12028Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 11974..12028 -
1680866406.7491765-CDS-A-nodosum_M_contig1038:12343..124621680866406.7491765-CDS-A-nodosum_M_contig1038:12343..12462Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 12344..12462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1038.7.1prot_A-nodosum_M_contig1038.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1038 11123..12462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1038.7.1

>prot_A-nodosum_M_contig1038.7.1 ID=prot_A-nodosum_M_contig1038.7.1|Name=mRNA_A-nodosum_M_contig1038.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp
MQGGPILVQAAVCDGNANVGYRRCAVKNCPLDIADNNRDRFCPVHAYHEN
ACLLCEEEGFQTCEAHASNETAWERYQYRGSYNLRRRAAAAGEEYEAGEY
RALKAAF
back to top

mRNA from alignment at A-nodosum_M_contig1038:11123..12462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1038.7.1 ID=mRNA_A-nodosum_M_contig1038.7.1|Name=mRNA_A-nodosum_M_contig1038.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1340bp|location=Sequence derived from alignment at A-nodosum_M_contig1038:11123..12462- (Ascophyllum nodosum dioecious)
ATGCAGGGTGGGCCAATCCTTGTCCAGGCAGCGGTTTGCGACGGCAACGC
CAACGTGGGATACAGGCGTTGCGCTGTGAAAAACTGCCCTTTAGACATAG
CGGATAACAACCGCGATAGGTAAGGCTCCCCTTTCGCCCTCTATTTCCTT
GCGACGGTCGCACATAGTAAGTGGCGCCCAAACTTGGAAATCACTATTTC
GCACGCATTGCGTGGTGCTCGCTTGAAATTATGGCTCTCATTAGTTCTCG
GGAGTACTGCTTTCTGGTGCTGTTTTGTTTTGCCAGACGTATATTTTGAC
GCCGTGTTGTGACAAGTCCGCCCATGCGGAACTGGAAGGGCTTCACCAGT
GTGTCTTGAAGAAATTTTGATGGAAACTTCGTCGGTGCCAGATGATCTAC
TGTGCGCGTCACGTGTTTCTGTTGTTATTAACAGATTCTGTCCGGTTCAT
GCGTACCACGAGAATGCCTGCCTGCTATGCGAGGAGGAGGCGAGGGAGGG
GTTCCAGACATGCGAAGCCCACGCATCTAATGAGACGGCCTGGGAACGAT
ATCAATACCGTGGGTCCTATAACTTGCGGCGGCGAGCGGCGGCTGCCGGA
GAGGAGTACGAGGTGAGTGAAAACAAACATGCCGGGGATGCAGACTGGCG
TGATACAGAATGTGCATATATGTATATGTTATAAAAAACGCGAACCTATA
TGAAACCCGTATTTCGCTGGGAACGCCTATTTGCAGTCCATGGACTTTCA
GAGAGAACCACAGTCCAAACATCATCTTTACTTCTTATATTGCTTTTACC
AACCCGACCCATATCGCTAACGCTAACCCAGACCCCCACCCCAGCTGACC
GCGTGGTCCCAATTCATAGCTGGCGTCCGCTTGGTCATAGTACCGTGTGG
GCTGATTTTGTGTGCGTCTCTGGTTCGGTTTTTGTATCTGGTGCGAACCC
AATCTAAGAAGTAAAGATCCATGGCAGTGGGCTGGTTTCTCCTCTTCACA
GTATAGATGATGTTTGGACTGTGGTTCTCTCTGAAAGTCCATGGACTGCA
AATAGGTAAATCCTATTTCGCTTTGGACTCGTGGAATTCGCAATTTGTGA
AAGCGTAAAGTAGAATAAAAGATCTTGCAGTGGGGTTACCCCCGCGGGCG
CAGGAAAAGGTCGTCCGGCATTACAACCACCACGAAGTATTATCGAACTC
ACACGTATCCCATCTTGAATACAGACCAGCCGATTAGCGCCCGTAAATGT
TTAATGTGCTGTTGAAACGGTTGTTTCCCTTAACGTGCGCTCCGCTGGAT
GGTCCAGGCCGGCGAATACCGGGCGCTTAAGGCCGCGTTC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1038:11123..12462-

>mRNA_A-nodosum_M_contig1038.7.1 ID=mRNA_A-nodosum_M_contig1038.7.1|Name=mRNA_A-nodosum_M_contig1038.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig1038:11123..12462- (Ascophyllum nodosum dioecious)
ATGCAGGGTGGGCCAATCCTTGTCCAGGCAGCGGTTTGCGACGGCAACGC
CAACGTGGGATACAGGCGTTGCGCTGTGAAAAACTGCCCTTTAGACATAG
CGGATAACAACCGCGATAGATTCTGTCCGGTTCATGCGTACCACGAGAAT
GCCTGCCTGCTATGCGAGGAGGAGGGGTTCCAGACATGCGAAGCCCACGC
ATCTAATGAGACGGCCTGGGAACGATATCAATACCGTGGGTCCTATAACT
TGCGGCGGCGAGCGGCGGCTGCCGGAGAGGAGTACGAGGCCGGCGAATAC
CGGGCGCTTAAGGCCGCGTTC
back to top