mRNA_A-nodosum_M_contig1038.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1038.4.1
Unique NamemRNA_A-nodosum_M_contig1038.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1038.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1038contigA-nodosum_M_contig1038:9747..10539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog203908.EGG07045
Model size223
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.23e-05
EggNOG OGs2CY2J@1|root,2S1HF@2759|Eukaryota,3AIB2@33154|Opisthokonta,3PB7J@4751|Fungi,3V4R7@5204|Basidiomycota,2YG7C@29000|Pucciniomycotina
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866406.9761233-CDS-A-nodosum_M_contig1038:9746..98251680866406.9761233-CDS-A-nodosum_M_contig1038:9746..9825Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 9747..9825 -
1680866406.9868956-CDS-A-nodosum_M_contig1038:10065..101571680866406.9868956-CDS-A-nodosum_M_contig1038:10065..10157Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 10066..10157 -
1680866406.9967644-CDS-A-nodosum_M_contig1038:10488..105391680866406.9967644-CDS-A-nodosum_M_contig1038:10488..10539Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 10489..10539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1038.4.1prot_A-nodosum_M_contig1038.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1038 9747..10539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1038.4.1

>prot_A-nodosum_M_contig1038.4.1 ID=prot_A-nodosum_M_contig1038.4.1|Name=mRNA_A-nodosum_M_contig1038.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=74bp
AARCFDGIWPDPLKRPQLIFYDLACRRLRYLQNQGDLSWEATTWMVDRFH
FETHTDAFCLVFTNPEDRTNPFTW
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mRNA from alignment at A-nodosum_M_contig1038:9747..10539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1038.4.1 ID=mRNA_A-nodosum_M_contig1038.4.1|Name=mRNA_A-nodosum_M_contig1038.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=793bp|location=Sequence derived from alignment at A-nodosum_M_contig1038:9747..10539- (Ascophyllum nodosum dioecious)
GCCGCGCGCTGTTTCGACGGAATATGGCCTGATCCGTTAAAGCGGCCACA
AGTGAGTAACCCCCCCCCCCCTCCCCAGGCGCGTATTCCTCTAGCGTAAC
CACAGTTGTACGACGCGAAAACAAACGGTGTTCGAAAATACATGTCTAGG
ATTACAACGATAGAAGGAAGAAGTACTGTATCTCAGGCTCCTCTTATAGC
GAGTGAACTGTGAAAAACATGGAGTTATGTTTACCATGGTGAATTATGTC
AGTTCGCACGGAGAAAGAAGCGATAAATAACAAGTAAACATTATAGCAAT
GTTCTTTAGCCAGCAGTTATGAAGGTTTCGTGAACGACTCTATTATGGCA
AATGCTCTTCGTTCGATGCCCGTACGGTGCAGTTGATCTTCTATGATTTG
GCTTGCCGCCGACTTCGGTACTTGCAGAACCAAGGAGATCTGAGCTGGGA
GGCGACGACATGGATGGTTGACCGGTTAGTCAGGCCACCGCGAAAATTAT
GTGTAGCGCATATCCGCTCCTTTTACCATGCTTGACCTATGGTCGGTGAT
AAGTAATCGCTCTTGGTCCTTTTCGACCTATTCGTTAACAATGGGAATAT
CTGGTCGACGTTGGGGCCGACCAAGAAACTGCATATTCCAAACAGGCATC
CGTTACAGTGCAACAAAAAGAAACCAAAAACATTCCCTACTCTCTTGTGC
ACGCAAAAAATCAGGTTTCACTTCGAAACACACACTGACGCGTTCTGCCT
CGTATTCACAAACCCCGAGGACCGGACGAACCCTTTCACCTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1038:9747..10539-

>mRNA_A-nodosum_M_contig1038.4.1 ID=mRNA_A-nodosum_M_contig1038.4.1|Name=mRNA_A-nodosum_M_contig1038.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at A-nodosum_M_contig1038:9747..10539- (Ascophyllum nodosum dioecious)
GCCGCGCGCTGTTTCGACGGAATATGGCCTGATCCGTTAAAGCGGCCACA
ATTGATCTTCTATGATTTGGCTTGCCGCCGACTTCGGTACTTGCAGAACC
AAGGAGATCTGAGCTGGGAGGCGACGACATGGATGGTTGACCGGTTTCAC
TTCGAAACACACACTGACGCGTTCTGCCTCGTATTCACAAACCCCGAGGA
CCGGACGAACCCTTTCACCTGG
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