mRNA_A-nodosum_M_contig1038.21.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1038.21.1
Unique NamemRNA_A-nodosum_M_contig1038.21.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1038.21.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 546 bits (1407), Expect = 5.590e-175
Identity = 324/713 (45.44%), Postives = 419/713 (58.77%), Query Frame = 1
Query:  580 LGDVQHALELVSKFDSDGRYYSPSGKMLYLKDNPWKMPPEAVVEQGLEAIKIFLGDVRKARENGAQVRSLKHLKVVLVGSASAGKTSLMESIIKGTKSPTEGTLEEASTVGIDLRHHLLQGTKVEFYDCAGQVDYAGMHQTFLTRRALYLLLWDVTLFHGLDPRYLEKAVYRNIMRWLYTLHLRAPGATMILVANKCDGSLADFAESTERVKILVDRLLKEWQSRRSSNHRNGGDVTVVRLLDGISRTSCVDYG-----GIDELVERFSKESATSIQVPPAWDLALEVLDDLRAGGDPLQAARAHLCLKE---TKGTNKKVINTFRTKNQLLKLWEDIVRQVSEELQSAKDMAAVSNWENALDGALWINEFAGQILRIDRDEGIFLDVVWLSKVLSPILSHKLHAEDFPTI-----------DLKRQGYPSSSRCSPVGFCTTHLERCPDPCRTGIKGKIDVN*IYFPCSPQAWRDPSPGTAGLFVRPQRVARVTWRRRI*RYVGNHASGRGM*R*TAKSY*FFCRECTPGLSG------VKLKWECDAAQSPYGLVERLISSCNVIGEVEQDLCWRYGALFTSPEMIWGDDRQVRLYKFLISYDN-----RMLSLRIIGLFSDDRVLAALRYVASAMVVLSMEWPGVQWEGWLDCLNHPQARIYLTPPGETRIGGPLLDQGAYAHSMMCDCRREADGVLRLVRQRLGTVVDT 2628
            LG+ + AL LV +           G  LYL  NPW MPPE VVE GL A+K +L DVR+A++ GA V SL+ LKVVLVGSASAGKTSLM SII G  SPTEGT  +ASTVG++LR   LQ TKVEF+DCAGQVDYAGMHQTFLTRRALYLL+ D+T +HG+D   L+KA++ +IMRWLY L+LRAPG+T++LVANKCDGS+  FAE+ ER++  V  L+  W   R    R+ G VT + LL G+SR SC + G     G+  L+   S+++AT+I VPPAWDLALEV+  LRA  +P+ AAR  L L       G        F +K++L + W  +V  + +++ +A     +SNWE+AL+GALWI++FAG  LR+D  +GIFLDV+WLSK LSPILSHKL  + F               + R+ +        VG      E   +   + +  K+ V       +  A  D S  TA   V       V  R  +      H                  R    GL+       V LKWE D A  PYGL+ERLI+SC+V+GEVE   CWRYGA+F S +M + + R VR YK  +S  +     R+ + ++ G    +RV  A+RYVASAM+ LS EWPGV W GWLDC  HP   +Y+    E R+G PLL   A   +  CDC  E  GVLRL  + LG V+DT
Sbjct:    9 LGETEDALRLVERL----------GDSLYLHGNPWIMPPEGVVEAGLTAVKRYLVDVREAKKAGADVTSLQLLKVVLVGSASAGKTSLMHSIIAGRGSPTEGTPAQASTVGMELRPCQLQDTKVEFFDCAGQVDYAGMHQTFLTRRALYLLVVDITKYHGVDD--LDKAIHDDIMRWLYYLYLRAPGSTVVLVANKCDGSIDKFAETAERIQRRVRELVAVWHEARGLRGRSKGHVTDLTLLPGMSRVSCQEKGSPEASGLPALIALISRQAATAIHVPPAWDLALEVIGALRASCNPIAAARDKLGLPNPLPADGVADVHAFAFISKDELSRKWRSVVDNLRDDVPAAM----ISNWESALEGALWISDFAGHTLRVDGGDGIFLDVLWLSKCLSPILSHKLKNQPFENRWLWMRDDLAGDGILRREFALHIWRESVGEVVMESEEVAEALFS-VLIKLGVALPMGRRTLLAHSDRSTPTAPSDVSGSNDMLVIMR--LSETCNEHQ-----------------RTLFDGLASKMPRDRVTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGAVFQSHDMRFVEGRNVRFYKIALSMTSYNESERVFTAKVFGPLDSERVWVAIRYVASAMINLSKEWPGVLWTGWLDCEKHPSQHLYMASSVEARVGDPLLPAAA-PDARRCDCLLEPGGVLRLAVEELGPVIDT 684          
BLAST of mRNA_A-nodosum_M_contig1038.21.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 509 bits (1310), Expect = 7.250e-159
Identity = 313/715 (43.78%), Postives = 420/715 (58.74%), Query Frame = 1
Query:  580 LGDVQHALELVSKFDSDGRYYSPSGKMLYLKDNPWKMPPEAVVEQGLEAIKIFLGDVRKARENGAQVRSLKHLKVVLVGSASAGKTSLMESIIKGTKSPTEGTLEEASTVGIDLRHHLLQGTKVEFYDCAGQVDYAGMHQTFLTRRALYLLLWDVTLFHGLDPRYLEKAVYRNIMRWLYTLHLRAPGATMILVANKCDGSLADFAESTERVKILVDRLLKEWQSRRS-SNHRNGGDVTVVRLLDGISRTSCVDYGGIDELVERFSKESATSIQVPPAWDLALEVLDDLRAGGDPLQAARAHLCL--KETKGTNKKVINTFRTKNQLLKLWEDIVRQVSEELQSAKDMAAVSNWENALDGALWINEFAGQILRIDRDEGIFLDVVWLSKVLSPILSHKLHAEDFPTIDLKRQGYPSSSRCSPVGFCTTHLER------CPDPCRTGIKGKIDVN*IYFPCSPQAWRDPSPGTAGLFVRPQRVARVTWR--RRI*RYVGNHASGRGM*R*TAKSY*FFCRECTPGLSGVKLKWECDAAQSPYGLVERLISSCNVIGEVEQDLCWRYGALFTSPEMIWGDDRQVRLYKFLISYDN------RMLSLRIIGLFSDDRVLAALRYVASAMVVLSMEWPGVQWEGWLDCLNHPQARIYLTPPGETRIGGPLL-DQGAYAHSMMCDCRREADGVLRLVRQRLGTVVDTRLF-VPEVRGEKRS 2667
            +G+ +HAL  +++          S  ++ L  NPW MPPE VVE+GL A++ +L DVRKA E GA+V++LK LKVVLVGS+ AGKTSL+ SI++G   PT GT  E STVGI+L  H LQGT VEFYDCAGQVDY GMHQ FLTRRALYLL+WDV   HG     L++ ++++IMRWLY LHLRAPG+T+ILVANKCDGS+ DF  +   V+  V  L KEW+  R  S+ R   D+TV   L+  S  SC+D  G+ E+++R + +SA S++VPPAW LAL  LD LR   DP QA R  L L  +   G +++   +F T+N L++ W+ +V+ V  EL+S  +  AVS+ + A++GALWI+EFAGQ+LR+   +G+FLDVVWLS  L PIL HKL  + FP      +     +    + F   HL         P+     +   I    +  P  P +   P  G A    RP  ++R       R+    G     + +     + +    RE T       L W  D+A  PYGLVER+I+SC+ +G VE  LCWRYGA+F S  M   D    RLY F++ YD+      R+LS+R+ G   D+RV AALR+VAS++V +S +WPGV WEGW  C    + R Y     +  IG  LL D    A    CDC      VLRLV +RLG VVDT+     +V G +R+
Sbjct:  161 VGEAEHALRWLTR---------RSECLIVLGGNPWIMPPEGVVEKGLPAVESYLLDVRKAEEAGAEVKTLKLLKVVLVGSSQAGKTSLVNSIVEGRGLPTVGTPAEVSTVGIELLRHNLQGTAVEFYDCAGQVDYYGMHQNFLTRRALYLLVWDVLRCHGKTDDDLDEVIFQDIMRWLYVLHLRAPGSTVILVANKCDGSIEDFTGTAAVVEERVAVLRKEWRKARGFSSTRMDMDMTV---LERSSLVSCLDGVGLQEMIDRIAAQSAASMRVPPAWGLALTFLDALRDSRDPQQACRDCLSLGSRPKVGADREPGRSFFTENSLVEQWKGVVQNVEGELRSDAEKMAVSDPDGAIEGALWISEFAGQVLRVANGDGVFLDVVWLSTALKPILDHKLVHKVFPQHFAGMRNELVHNGILRIAFAE-HLWSDVMEITVPEEVLDALCRVIVNLGVALPLEPASLL-PGSGRALATGRPN-ISRQDMLVIMRLPETCGAEHELQELISDQMRRH--SDREVT-------LMWRFDSAGPPYGLVERVIASCHAVGVVEMGLCWRYGAVFQSRAMATSDGSD-RLYTFVVRYDSAVGNERRILSMRMFGPLQDNRVWAALRWVASSVVNISKDWPGVLWEGWPQCARRHRNRTYFATSDKASIGDFLLADAATGATRRGCDCLAVEGTVLRLVLERLGKVVDTQAPPASDVEGVRRT 850          
BLAST of mRNA_A-nodosum_M_contig1038.21.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 490 bits (1261), Expect = 6.810e-150
Identity = 303/733 (41.34%), Postives = 395/733 (53.89%), Query Frame = 1
Query:  574 SDLGDVQHALELVSKFDSDGRYYSPSGKMLYLKDNPWKMPPEAVVEQGLEAIKIFLGDVRKARENGAQVRSLKHLKVVLVGSASAGKTSLMESIIKGTKSPTEGTLEEASTVGIDLR-HHLLQGTKVEFYDCAGQVDYAGMHQTFLTRRALYLLLWDVTLFHGLDPRYLEKAVYRNIMRWLYTLHLRAPGATMILVANKCDGSLADFAESTERVKILVDRLLKEWQSRRSSNHRNGGDVTVVRLLDGISRTSCVDYGGIDELVERFSKESATSIQVPPAWDLALEVLDDLRAGGDPLQAARAHLCLKETKGTNKKVINTFRTKNQLLKLWEDIVRQVSEELQSAKDMAAVSNWENALDGALWINEFAGQILRIDRDEGIFLDVVWLSKVLSPILSHKLHAEDFPTI------------------------DLKRQGYPSS----SRCS---------PVGFCTTHLERCPDPCRT-GIKGKIDVN*IYFPCSPQAWRDPSPGTAGLFVRPQRVARVTWRRRI*RYVGNHASGRGM*R*TAKSY*FFCRECTPGLSGVKLKWECDAAQSPYGLVERLISSCNVIGEVEQDLCWRYGALFTSPEMIWGDDRQVR-LYKFLISYDN------RMLSLRIIGLFSDDRVLAALRYVASAMVVLSMEWPGVQWEGWLDCLNHPQARIYLTPPGETRIGGPLL-DQGAYAHSMMCDCRREADGVLRLVRQRLGTVVDTR 2631
            S LG  + AL+ V++          SG+ L L+DNPW MPPE +V +GL A++ +L DVR+A E GA+V++L  LKVVL+GS  AGKTSL+ SI+    S T GT EE STVGI+LR HH   G  VEFYDCAGQVDY GMHQTFLTRRALYLL+WDV+  HG +   L+K V  +IM+WLY LHLR PG+ ++LVANKCDGSL +F  +   V+    R L+EWQ  R S       VT + +L   S  SC D GG+ E++ R   + ATSI VPP+W LAL  LD LR   DP  A R  L L           ++F T++ L + W D V+ V+ EL S  +  AVS+   A++GALWI+EFAG ILR+   + IFLDVVWLS  L PILSHKL +  FP                          DL+ +  PS     + C          P+G    H     DP    G  G+ D+  +     P    +   G     VR              R+ GN                            V LKW  D A + +GLVER+I+SC+ +G V   LCWRYGA+F S      DD  +  LY F+I YD       R+L++ + G  ++DR+ AALR+VAS++V  S  WPGV+WEG   C  H + R+Y   P E RIG P+L D        +CDC       +RLV +RLGT++DT+
Sbjct:  316 SALGQAEQALQFVARLGQ-----LASGQNLRLQDNPWVMPPEGIVNEGLPAVEKYLRDVREAEEAGAEVKTLNVLKVVLIGSPGAGKTSLLNSIVNERGSRTVGTSEEVSTVGIELRRHHQRNGRIVEFYDCAGQVDYYGMHQTFLTRRALYLLVWDVSRCHGKESNDLDKVVSEDIMKWLYALHLRVPGSAVLLVANKCDGSLQEFVGTAGAVESSARRQLQEWQGNRKSP-----GVTKLTILQQPSLVSCDDGGGLSEVIARVDAQGATSIVVPPSWGLALAFLDALRDSRDPEPATRRFLHLDFDAEVGAAQGSSFMTESTLFQRWNDTVKSVAGELTSPAERMAVSDHHGAMEGALWISEFAGHILRVAHSDVIFLDVVWLSAALKPILSHKLESHFFPRSELTAMKDELVDNGVLRLKFAEYLWDLEMEAPPSEEVMDALCGVLHSLGVALPLGREERHTASAIDPAAAHGQIGRQDM--LVIMRLPDTCEENIQGELQELVRDLSE----------RHGGNE---------------------------VTLKWRFDGAGASHGLVERVIASCHEVGSVRSGLCWRYGAVFQSYAR--ADDGGLNWLYSFVIRYDEEVGSGERVLAVTMFGPTAEDRLWAALRWVASSVVNTSTGWPGVRWEGGPACAIHARGRMYFKTPIEARIGDPILTDPDPRTAPNVCDCYTTEGNAMRLVLERLGTIIDTQ 997          
BLAST of mRNA_A-nodosum_M_contig1038.21.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 7.440e-48
Identity = 187/689 (27.14%), Postives = 294/689 (42.67%), Query Frame = 1
Query:  649 SGKMLYLKDNPWKMPPEAVVEQGLEAIKIFLGDVRKARENGAQVRSLKHLKVVLVGSASAGKTSLMESIIKGTKSPTEGTLEEASTVGIDLRHHLLQGTKVEFYDCAGQVDYAGMHQTFLTRRALYLLLWDVTLFHGL-----------DPRYLEKAVYRNIMRWLYTLHLRAPGATMILVANKCDGSLADFAESTERVKILVDRLLKEWQSRRSSNHRNGGDVTVVRLLDGISRTSCVDYGGIDE---------------------------------LVERFSKESATSIQV--PPAWDLALEVLDDLRAGGDP-----LQAARAHLCLKETKGTNKKVINTFRTKNQLLKLWEDIVRQVSEELQSAKDMAAVSNWENALDGALWINEFAGQILRIDRDEGIFLDVVWLSKVLSPILSHKLHAEDFPTIDLKRQG-----------YPSSSRCSPVGFCTTHLERC--PDPCRTGIKGKIDVN*IYFPCSPQAWRDPSPGTAGLF-VRPQRVARVTWRRRI*RYVGNHASGRGM*R*TAKSY*FFCRECTPGLSGVKLKWECDAAQSPYGLVERLISSCNVIGEVEQDLCWRYGALFTSPEMIWGDDRQVRLYKFLISYDNRMLSLRIIGLFSDDRVLAALRYVASAMVVLSMEWPGVQWEGWLDCLNHPQARIYL---TPPGETRI 2511
            +G+ L L  NPW  PPE++V +GL++++ +  D+     +  +++  + +KVVLVG   AGKTSL +S+ K  K+   G  +E STV  D+    L+G+ V  YDCAGQV Y G+ Q FLT R++ +L+ +   F              D R LE      +  WL ++  R PG  +ILVA KCD    +  E+ +R++      L  W        RNG D   VRL   +S TSC   G  +                                  LV +  +     +Q+  P +WD+AL  LD L  G  P     L++  +     ET G    V     T  +L   W+  V ++       +    V+N ENAL+GAL I EF G +  +  ++ +FLDVVWL+++L P+L+HK        ++L   G             S  R    G     L     PD     +   +    + FP       DP+ G   L  ++P R   V                        +    FC   TP     +  W+      P G VE++++ C  +G V+    WRYG L      +  + R   +     S DN +++ ++ G  S      A+ YV SA+ ++ +++PG++W+G L C  H    +++   +PP   R+
Sbjct:  129 AGRHLSLNSNPWAEPPESIVAKGLKSVRGYFEDLFA---DHCRIKR-RGVKVVLVGQEGAGKTSLRQSM-KANKATPTGEWKEESTVFADVEPMKLEGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFRQQLGSDNIDQVEEDCRKLEGL---RVCDWLRSISCRVPGNDVILVATKCDLVNGNVEETGQRIEHACRTWLSSWV-------RNGMDS--VRLERHVSLTSCFPIGASEHGESRRGNHALKQGWACDWRDVEGDMSSPSLLYRLVNKPDQGGLRGVQMVLPRSWDVALTFLDSLEYGRHPVEMVMLKSPDSDSGATETAGGTTTVYQGI-TVEELSARWQGTVDELG------RRGITVTNAENALEGALSIREFDGSL--VCHEKFVFLDVVWLARILKPLLNHKDQEMFDGRVNLGDTGDTRITLDDPSDIASWDRLKNEGVLEPRLADAIWPDGLSEYVLPTLASLGLIFPLE----NDPAEGLVVLLRLKPHRPESV-----------------------GEVIDTFCSGLTPAF---RASWKVFLGVPP-GAVEKVLTRCCALGGVQT--FWRYGVLVHGGLGVQDERRTFAVVVEYSSTDNELVA-QVFGDISRPGPWMAMSYVMSAVSLMLVDFPGLRWKGSLKCPQHGDGMLFVNKVSPPHAYRL 757          
BLAST of mRNA_A-nodosum_M_contig1038.21.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 7.700e-48
Identity = 187/690 (27.10%), Postives = 296/690 (42.90%), Query Frame = 1
Query:  673 DNPWKMPPEAVVEQGLEAIKIFLGDVRKARENGAQVRSLKHLKVVLVGSASAGKTSLMESIIKGTKSPTEGTLEEASTVGIDLRHHLLQGTKVEFYDCAGQVDYAGMHQTFLTRRALYLLLWDVTLFHGLD---------PRYLEKAVYRNIMRWLYTLHLRAPGATMILVANKCDGSLADFAESTERVKILVDRLLKEWQSRRSSNHRNGGDVTVVRLLDGISRTSCV-----DYGGI--------DE-------------------LVERFSKES-----ATSIQVPPAWDLALEVLDDLRAGGDPLQAARAH-LCLKETKGTNKKVINTFR--------TKNQLLKLWEDIVRQVSEELQSAKDMAAVSNWENALDGALWINEFAGQILRIDRDEGIFLDVVWLSKVLSPILSHKLHAEDF--------PTIDLKRQGYPSS-SRCSPVGFCTTHLERC--PDPCRTGIKGKIDVN*IYFPCSPQAWRDPSPGTAGLF----VRPQRVARVTWRRRI*RYVGNHASGRGM*R*TAKSY*FFCRECTPGLSGVKLKWECDAAQSPYGLVERLISSCNVIGEVEQDLCWRYGALFTSPEMIWGDDRQVRLYKFLISY--DNRMLSLRIIGLFSDDRVLAALRYVASAMVVLSMEWPGVQWEGWLDCLNHPQARIY---LTPPGETRIGG 2517
            +NPW+ PPEAVV +G+ A++ +  D+      G      K +KVVLVG   AGKTSL +S+  G  +PT G+  E STV ID+    + G  +  YDCAGQV Y G+ Q FL+ RA+ LL+ D+  F   D          + L K     +  WL +L  R P + +++VA KCD +     ++  R++  +   L+ W         +G  +  V + DG+S TSC      + GG         DE                   L+ R    S       S+ +P +W++ALEVLD L +G +P+++A+ + L     KG  + V   ++        T+  L   W ++V  +        D  +V   ++AL+GAL I E  G ++R   +  +FLDV WL+++L P+L+H+   +            I LK   + +S +R    G     L R   PD     +   +D   + +P       DP+ G   L      RP+ V                           K    F R+ T  LS   +KW+      P G +E++++ C  +G +     WR+G L        G     R +  ++ Y  D   + +++ G  S     AAL +  S    +  E+PG++W   L C  H Q        T PG+  + G
Sbjct:  247 ENPWQEPPEAVVSKGISAVQEYFTDLFA---EGIAPVGRKMIKVVLVGQEGAGKTSLRQSLRTGRPTPTSGS--EESTVQIDVEQMDVNGVTLRVYDCAGQVAYTGLLQMFLSPRAVSLLVCDLGAFGQRDGTLIHSDQLKKDLSKLQELRVCDWLRSLSFRIPDSDVVVVATKCDLAAGMGTDAAGRIEGAIGEWLESW---------SGAGMNAVHVEDGVSLTSCFPPTPNEDGGAALGKRKSPDEDSTWACDWREGVSVESQPSLLHRVMYNSKGNVRGASLVLPRSWNIALEVLDALGSGRNPVESAQQNVLASGGPKGATEVVPAVYQRNQGVGGLTRADLSTKWNEVVAALE------GDGVSVVKPDHALEGALLIREHEGSLVR--HETYVFLDVTWLAQILKPLLNHRDDEDPLRGDVSLGDTGITLKEDKHIASWNRLKGHGVLEPSLARVLWPDGLSNYVLPALDSLGLTYPLDD----DPAEGLVVLLRLDEKRPEDVG--------------------------KELDDFRRDHTAVLS---VKWKVFLGVPP-GAIEKMLTRCCRLGTLRT--FWRFGVLVQGS---LGGGIAARTFALVVEYSHDKCEVDMKVYGSISTAAPWAALSFGISVFQAMCSEFPGLRWRAALKCPQHEQDMQISKAATRPGDKSLFG 875          
BLAST of mRNA_A-nodosum_M_contig1038.21.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 8.060e-48
Identity = 189/705 (26.81%), Postives = 299/705 (42.41%), Query Frame = 1
Query:  601 LELVSKFDSDGRYYSPSGKMLYLKDNPWKMPPEAVVEQGLEAIKIFLGDVRKARENGAQVRSLKHLKVVLVGSASAGKTSLMESIIKGTKSPTEGTLEEASTVGIDLRHHLLQGTKVEFYDCAGQVDYAGMHQTFLTRRALYLLLWDVTLFHGL-----------DPRYLEKAVYRNIMRWLYTLHLRAPGATMILVANKCDGSLADFAESTERVKILVDRLLKEWQSRRSSNHRNGGDVTVVRLLDGISRTSCV--------------------------DYGG-------IDELVERFSKESATSIQV--PPAWDLALEVLDDLRAGGDPLQAA--RAHLCLKETKGTNKKVINTFRTKNQLLKLWEDIVRQVSEELQSAKDMAAVSNWENALDGALWINEFAGQILRIDRDEGIFLDVVWLSKVLSPILSHKLHAEDFPTIDLKRQG-----------YPSSSRCSPVGFCTTHLERC--PDPCRTGIKGKIDVN*IYFPCSPQAWRDPSPGTAGLF-VRPQRVARVTWRRRI*RYVGNHASGRGM*R*TAKSY*FFCRECTPGLSGVKLKWECDAAQSPYGLVERLISSCNVIGEVEQDLCWRYGALFTSPEMIWGDDRQVRLYKFLISYDNRMLSLRIIGLFSDDRVLAALRYVASAMVVLSMEWPGVQWEGWLDCLNHPQARIYLTPPGETRIGGPLLD 2529
            L++    ++ G   +  G  L L +NPW  PPE++V +G ++I+ +  D+        +++  + +KVVLVG   AGKTSL +S+ K  K+   G  +E STV  D+    L+G+ V  YDCAGQV Y G+ Q FLT R++ +L+ +   F              D R LE      +  WL ++  R P   +ILVA KCD +  +  E   R++    R L  W  R         ++  VRL  G+  TSC                           D GG       I  LV +  K     +Q+  P +WD+AL  LD L  G DP++    ++    +    T K  +    T  +L   W++ V  +       +    V+N ENAL+GAL I EF G +  +  ++ +FLDVVWL+++L P+L+HK        ++L   G             S  R    G     L     P+     +   +    + FP       DP+ G   L  ++P R   V                        K    FC   TP     +  W+      P G +E++++ C  +G V+    WRYG L      +  + R   +     S DN +++ +I G  S      A  YV SA+ ++ +++PG+ W+G+L+C  H    +++     TR G   L+
Sbjct:  284 LDIFDSVEAQGLNDTGIGPSLSLSENPWAEPPESIVAKGPKSIRGYFEDLYAEH---CRIKR-RGVKVVLVGQEGAGKTSLRQSM-KANKATLTGEWKENSTVLADVESMELEGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFGEQLGSDNIDQVEEDCRKLEAL---RVCNWLRSISRRVPDTEVILVATKCDLAGGNAWEIGRRMEKACRRWLSSWACR---------NMLSVRLEPGVCLTSCFPVGAGEHGESSSENFLSKSCWACDWRDVGGGEPSPSLIYRLVNKPDKGGLRGVQMVLPRSWDIALTFLDSLEHGRDPVEMVILKSPDSDRGATETAKTTVYQGITVEELSAKWQETVDGLG------RRGITVTNAENALEGALSIREFDGSL--VPHEKFVFLDVVWLARILKPLLNHKDQEMFDGRVNLGDTGDTRITLDDSADIASWDRLKKEGVLEPRLAYAIWPNGLSEYVLPTLASLGLIFPLE----NDPAEGLVVLLRLKPHRPESV-----------------------GKVIDTFCSGLTPAF---RASWKIFLGVPP-GAIEKVLTRCCGLGGVQT--FWRYGVLVHGGLGVQDERRTFAVVVEYSSTDNELIA-QIFGDVSTPGPWGATSYVMSAVSLMLVDFPGLGWKGYLECPQHGDGMLFVNKA--TRDGDKFLE 927          
BLAST of mRNA_A-nodosum_M_contig1038.21.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 6.500e-47
Identity = 197/681 (28.93%), Postives = 287/681 (42.14%), Query Frame = 1
Query:  649 SGKMLYLKDNPWKMPPEAVVEQGLEAIKIFLGDVRKARENGAQVRSLKH--LKVVLVGSASAGKTSLMESIIKGTKSPTEGTLEEASTVGIDLRHHLLQGTKVEFYDCAGQVDYAGMHQTFLTRRALYLLLWDVTLFH---GLD-----PRYLEKAVYRNIMRWLYTLHLRAPGATMILVANKCDGSLADFAESTERVKILVDRLLKEWQSRRSSNHRNGGDVTVVRLLDGISRTSCVDYG---------GID------------------------ELVERFSKESATSIQV--PPAWDLALEVLDDLRAGGDPLQAARAHLCLKETKGTNKKVINTFRTKNQLLKL------WEDIVRQVSEELQSAKDMAAVSNWENALDGALWINEFAGQILRIDRDEGIFLDVVWLSKVLSPILSHKLHAEDFPTIDLKRQG-----------YPSSSRCSPVGFCTTHLERC--PDPCRTGIKGKIDVN*IYFPCSPQAWRDPSPGTAGLF-VRPQRVARVTWRRRI*RYVGNHASGRGM*R*TAKSY*FFCRECTPGLSGVKLKWECDAAQSPYGLVERLISSCNVIGEVEQDLCWRYGALFTSPEMIWGDDRQVRLYKFLISYD--NRMLSLRIIGLFSDDRVLAALRYVASAMVVLSMEWPGVQWEGWLDCLNHPQARIYLT 2490
            SG  L L  NPW  PPE++V +G ++I+ +  D+       A+   +K   +KVVLVG   AGKTSL +S+ K  K+   G  +E STV  D+    L+G+ V  YDCAGQV Y G+ Q FLT R++ +L+ +   F    G D          K     +  WL ++  R PG  +ILVA KCD    +  E+  R++      L  W        RNG D   VRL   +S TSC   G         G D                         LV +  +     +Q+  P +WD+AL VL+ L  G DP++         E + T   V  T     Q +K+      W + V ++       K    V+N ENAL+GAL I EF G ++R   ++ +FLDVVWL+++L P+L+HK        ++L   G             S  R    G     L     PD     +   +    + FP       DP  G   L  + P R A V                        ++   FC + TP  S     WE      P G +E++++ C  +G+V+    WRYG L        GD     ++  +  Y   N  L+ +I G  S      AL YV SA+ ++ M++PG++W G L C  H     + T
Sbjct:   80 SGVNLALLGNPWAEPPESIVAKGPKSIRGYFEDLY------AEPCWIKRSSVKVVLVGQEGAGKTSLRQSM-KANKATPTGEWKEESTVFADVEPMELEGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFGQQLGSDNVDQVEEDCRKLQALRVCDWLRSISRRVPGNDVILVATKCDLVSGNAEETGRRLEHACRMWLSTWV-------RNGMDP--VRLEPHVSLTSCFPIGDGEHGESNTGSDASKQGWACDWRHVEGDKSSPSLLYRLVNKPDEGGLRGVQMVLPRSWDIALTVLEALEHGRDPVEMVLLKSPDSERRPTETGVGKT--NVYQAIKVEELGTNWRETVDELG------KRGIVVTNAENALEGALSIREFDGSLVR--HEKFVFLDVVWLARILKPLLNHKDQRTFDGRVNLGDTGDARITLDDSSDIASWGRLKNEGVLEPRLAYAMWPDGLSEYVLPTLASLGLTFPLE----GDPDNGLVVLLRLEPNRPASV-----------------------GEAIDTFCSKYTPAFSA---SWEIFLGVPP-GAIEKVLTRCCGLGDVQT--FWRYGVLVHGG---LGDLDGRGIFAVVTEYSSTNNELTAQIFGDISTSAPWVALSYVTSAVSLMLMDFPGLRWNGSLKCPQHGYEMPFAT 698          
BLAST of mRNA_A-nodosum_M_contig1038.21.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 1.230e-43
Identity = 198/735 (26.94%), Postives = 303/735 (41.22%), Query Frame = 1
Query:  649 SGKMLYLKDNPWKMPPEAVVEQGLEAIKIFLGDVRKARENGAQVRSLKHLKVVLVGSASAGKTSLMESIIKGTKSPTEGTLEEASTVGIDLRHHLLQGTKVEFYDCAGQVDYAGMHQTFLTRRALYLLLWDVTLFHGL-----------DPRYLEKAVYRNIMRWLYTLHLRAPGATMILVANKCDGSLADFAESTERVKILVDRLLKEWQSRRSSNHRNGGDVTVVRLLDGISRTSCVDYGGIDELVERFSKESA------------------------------------TSIQVPPAWDLALEVLDDLRAGGDPLQAARAHLC---LKETKGTNKKVINTFR--TKNQLLKLWEDIVRQVSEELQSAKDMAAVSNWENALDGALWINEFAGQILRIDRDEGIFLDVVWLSKVLSPILSHKLHAEDFPTIDLKRQG-----------YPSSSRCSPVGFCTTHLERC--PDPCRTGIKGKIDVN*IYFPCSPQAWRDPSPGTAGLF-VRPQRVARVTWRRRI*RYVGNHASGRGM*R*TAKSY*FFCRECTPGLSGVKLKWECDAAQSPYGLVERLISSCNVIGEVEQDLCWRYGALFTSPEMIWGDDRQVRLYKFLISY---DNRMLSLRIIGLFSDDRVLAALRYVASAMVVLSMEWPGVQWEGWLDCLNHPQARIY-----------LTPPGETRIGGPLLDQGAYAHSM--MCDCRREADGVLRLVRQR 2607
            +G +L L DNPW  PP ++V +G  +I+ +  D+     +  Q  S+K   ++LVG   AGKTSL +S+      PT G  +E STV  D+    L+G+ V  YDCAGQV Y G+ Q FLT R++ +L+ +   F              D R LE+     +  WL ++  R P   +ILVA KCD    +  E   R++      L  W             +  VRL  G+  TSC     + E  E+ +  +A                                    T + +P +WD+AL VL+ L  G DP++    HL     ++   T  +    ++  T   L   W++ V      +  A+    V+N +NAL+GAL I EF G ++R   +  +FLDVVWL+++L P+L+HK        ++L   G             S  R    G     L R   P+     +   +    + FP       DP+ G   L  + P R  RV                        K    FC + TP  S     W+      P G +E++++ C  +G V+    WR G L        GD+    ++  ++ Y   DN  L+ +I G  S      AL YV SA+ ++ +++PG++  G L C  H  A +            L P G  +        GA A  +  M D R + D + R V+QR
Sbjct:  193 TGGILGLDDNPWAEPPASIVSKGPTSIRGYFEDLY-VESSRVQRNSVK---IILVGQEGAGKTSLRQSMKANAAIPT-GEWKEESTVFADVEPMQLEGSFVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQRGDDTGGQVKEDCRKLEEL---RVCDWLRSVSRRVPNNDVILVATKCDLVGGNAEEFGRRIEQATRTWLASWVH---------DGMQPVRLEPGVCLTSCC-ASAVGENGEKSTGHNASERGWACDWRDDRDDMPPPGLVHRLVNKPDGSGLRGTQMVLPRSWDIALTVLEALERGRDPVEVVVEHLAEPDREDATRTAARQTGVYQGITVEALRVKWQEAV------VGLARRGVNVTNAKNALEGALSIREFDGSLVR--HEMFVFLDVVWLARILKPLLNHKDEETFDGLVNLGDTGDTRVTLEDPLDIASWGRLKNQGVLEPRLARTMWPNGLSKYVLPTLASLGLTFPLK----NDPAGGLVVLLRLNPDRPERV-----------------------GKVIDTFCLDQTPAFS---TSWKIFLGV-PAGAIEKVLTRCCSLGGVQT--FWRSGVLVHGG---LGDEDGHEIFAVVLEYSSSDNE-LTAQIFGDISTPAPWVALSYVISAVRLMLLDFPGLRSRGSLKCPQHGDAMLLVNKMTQAGVKLLEPSGCPQCSPDTRGLGAAAIDLVSMVDIRLDRDVIFRDVKQR 864          
BLAST of mRNA_A-nodosum_M_contig1038.21.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.360e-43
Identity = 200/711 (28.13%), Postives = 299/711 (42.05%), Query Frame = 1
Query:  661 LYLKDNPWKMPPEAVVEQGLEAIKIFLGDVRKARENGAQVRSLKHLKVVLVGSASAGKTSLMESIIKGTKSPTEGTLEEASTVGIDLRHHLLQGTKVEFYDCAGQVDYAGMHQTFLTRRALYLLLWDVTLFH-----------GLDPRYLEKAVYRNIMRWLYTLHLRAPGATMILVANKCDGSLADFAESTERVKILVDRLLKEWQSRRSSNHRNGGDVTVVRLLDGISRTSCVDYG---------GIDELVERFSKE--------------------------SATSIQVPPAWDLALEVLDDLRAGGDPLQAARAHLCLKETKGTNKKVINTFRTKNQLLK--LWEDIVRQVSEELQSA-KDMAAVSNWENALDGALWINEFAGQILRIDRDEGIFLDVVWLSKVLSPILSHKLHAEDFPTIDLKRQG-----------YPSSSRCSPVGFCTTHLERC--PDPCRTGIKGKIDVN*IYFPCSPQAWRDPSPGTAGLF-VRPQRVARVTWRRRI*RYVGNHASGRGM*R*TAKSY*FFCRECTPGLSGVKLKWECDAAQSPYGLVERLISSCNVIGEVEQDLCWRYGALFTSPEMIWGDDRQVR-----LYKFLISY---DNRMLSLRIIGLFSDDRVLAALRYVASAMVVLSMEWPGVQWEGWLDCLNHPQARIYLTPPGETRIGGPLLDQGAYAHSM--MCDCRRE 2574
            L L  NPW  PPE +V +G +A++ +  D+    E     RS+  +KVVLVG   AGKTSL +S+     +PT G  +E STV  D+    L+G+ V  YDCAGQV Y G+ Q FLT RA+ +L+ +   F            G D R LE+     +  WL ++  R P   +ILVA KCD +  +  +   R++    R L  W        RNG  +  VRL   +S TSC + G         G  EL   ++ +                            T + +P +WD+AL VL+ L  G DP++     +  K           T R +  + +    ED+  +  E +    +    V+N +NAL+GAL I EF G ++R ++   IFLDVVWL+K+L P+L+HK        + L   G             S  R    G     L     P+     +   +    + FP       DP+ G   L  ++P R   V            HA               FC + TP LS     W+      P G +E++++ C  +G V     WRYG L      + G   +V      ++  ++ Y   DN  L+ +I G  S       L YV SA+ ++ +++PG++W G L C  H    +            P+   GA A  +  M D RR+
Sbjct:  153 LKLGTNPWVEPPEPIVVKGPKAVRGYFEDLYA--EPCRIKRSI--VKVVLVGQEGAGKTSLRQSMKANEATPT-GEWKEESTVFADVEAMELEGSSVRVYDCAGQVAYTGLLQMFLTPRAVCVLVCNAGKFGQQTRSESNDQVGEDCRKLEEL---RVCDWLRSISRRVPNNDVILVATKCDLAGGNAGKIGARMEHACRRWLSSWV-------RNG--LQPVRLEPCVSLTSCFETGVGEHGESSTGSHELKGGWACDWRDMADGNPSPSLLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHGRDPVEV----VLRKSPDPDRGDATETARGETAMYQGITVEDLSIKWQETVDGLERSGVTVTNAKNALEGALLIREFDGSLIRYEKF--IFLDVVWLAKILKPLLNHKDQETFDGLVSLGDTGDARITLDDPSDIASWGRLKSQGVLEPRLAYAIWPNGLSEYVLPALAFLGLTFPLED----DPAKGLVVLLRLKPDRPESV-----------GHAIDT------------FCLDHTPALSA---SWKIFLGVPP-GAIEKVLTRCCGLGGVRT--FWRYGVL------VHGGLGEVHVGRRGIFAVVLEYSSTDNE-LAAQIFGDISTPAPWVVLSYVMSAVSLMLLDFPGLRWRGSLTCPQHGDTMLLANK------ASPVAGLGAAAIDLVRMVDIRRD 794          
BLAST of mRNA_A-nodosum_M_contig1038.21.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 5.350e-42
Identity = 192/683 (28.11%), Postives = 288/683 (42.17%), Query Frame = 1
Query:  661 LYLKDNPWKMPPEAVVEQGLEAIKIFLGDVRKARENGAQVRSLKHLKVVLVGSASAGKTSLMESIIKGTKSPTEGTLEEASTVGIDLRHHLLQGTKVEFYDCAGQVDYAGMHQTFLTRRALYLLLWDVTLFHGL-----------DPRYLEKAVYRNIMRWLYTLHLRAPGATMILVANKCDGSLADFAESTERVKILVDRLLKEWQSRRSSNHRNGGDVTVVRLLDGISRTSCVDYGG---------------------------------IDELVERFSKESATSIQV--PPAWDLALEVLDDLRAGGDPLQAA-RAHLC-----LKETKGTNKKVINTFRTKNQLLKLWEDIVRQVSEELQSAKDMAAVSNWENALDGALWINEFAGQILRIDRDEGIFLDVVWLSKVLSPILSHKLHAEDFPTIDLKRQGYPSSSRCSPVGFCTTHLERCPDPCRTGIKGKIDVN*IYFPCSPQA-WRDPSPGTAGLFVRPQRVAR-VTWRRR---------I*RYVGNHASGRGM*R*TAKSY*FFCRECTPGLSGVKLKWECDAAQSPYGLVERLISSCNVIGEVEQDLCWRYGALFTSPEMIWGDDRQVRLYKFLISYDN--RMLSLRIIGLFSDDRVLAALRYVASAMVVLSMEWPGVQWEGWLDCLNHPQARIY---LTPPGET 2505
            + L  NPW  PPE++V++G ++++ +  D+        ++ +    KVVLVG   AGK+SL +S+     +PT G  +E STV  D+    L+G+ V  YDCAGQV Y G+ Q FLT R++ +L+ +   F              D R LE+     +  WL ++  R P   +ILV  KCD +  + AE  ERV+      L  W        R+G  +  V+L  G+S TSC    G                                 +  LV +         Q+  P +WD  L VLD L  G DP++   R  L        ET G N  V     T   L K W+ IV ++       +    V+N +NAL+GAL I EF G ++R   +  +FLDV+WL+++L P+L+HK    D  T D               G     L+   DP      G++    +  P    A W    PG    +V P   +  +T+            + R         G    T      FC   TP LS     W       P G +E++++ C  +G V+    WRYG L        GD     ++  ++ Y +    L+ +I G         AL YV SA+ ++ +++PG++W G L C  H  A +    +T  GET
Sbjct:  103 IVLDGNPWAEPPESIVDKGRKSMRSYFEDLYAEPCRIERIST----KVVLVGQEGAGKSSLRQSMKANEPTPT-GEWKEESTVFADVEPMELEGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAAAFGQQLERKNSGEVEEDCRKLEEL---RVCDWLRSISRRVPHNDVILVVTKCDLAGGNAAEIGERVEHACRTWLSSWV-------RHG--MQPVQLEPGVSFTSCFPAEGGQHGEVGTENHGSKGDWACDWHDMKDDHPPPSLLHRLVNKPDGGGLRGAQMVLPRSWDTVLIVLDSLEQGRDPVEVVLRKSLHPDRGDATETAGGNTVVYQGI-TVEDLSKKWQKIVDELE------RRGIIVTNAKNALEGALSIREFDGSLVR--HETFVFLDVLWLARILKPLLNHK----DQETFD-------GRVNLGDTGDARITLD---DPLYIASWGRLKNEGVLEPRLAYAMW----PGGLSEYVLPTLASLGLTFPLEGDLDEGQVVLLRLKPERPDSVGEVIDT------FCSRHTPALSA---SWNIFLGVPP-GAIEKVLTRCCGLGAVQT--FWRYGVLVHGG---LGDLGGRGIFAVVLEYSSTDHKLNGQIFGDIGTPAPWVALSYVMSAVSLMLVDFPGLRWGGALKCPQHGDAMLMANKVTQAGET 726          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1038.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE5.590e-17545.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW02_9PHAE7.250e-15943.78Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FVX5_ECTSI6.810e-15041.34LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L650_9PHAE7.440e-4827.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL98_ECTSI7.700e-4827.10LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LJS7_ECTSI8.060e-4826.81LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FZA1_ECTSI6.500e-4728.93LRR-GTPase of the ROCO family, incomplete sequence... [more]
D7FUC9_ECTSI1.230e-4326.94LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KSZ8_9PHAE1.360e-4328.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G431_ECTSI5.350e-4228.11LRR-GTPase of the ROCO family, incomplete sequence... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1038contigA-nodosum_M_contig1038:110655..124126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVX5
Preferred nameSLITRK2
PFAMsLRR_8
Model size3723
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
Exons14
Evalue1.55e-117
EggNOG OGs2CMPC@1|root,2QR6C@2759|Eukaryota
Descriptionpositive regulation of synapse assembly
Cds size1590
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1038.21.1prot_A-nodosum_M_contig1038.21.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1038 115046..121723 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866407.1261387-UTR-A-nodosum_M_contig1038:110654..1107271680866407.1261387-UTR-A-nodosum_M_contig1038:110654..110727Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1038 110655..110727 +
1680866407.1372867-UTR-A-nodosum_M_contig1038:111371..1114431680866407.1372867-UTR-A-nodosum_M_contig1038:111371..111443Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1038 111372..111443 +
1680866407.1460516-UTR-A-nodosum_M_contig1038:112082..1121541680866407.1460516-UTR-A-nodosum_M_contig1038:112082..112154Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1038 112083..112154 +
1680866407.1565874-UTR-A-nodosum_M_contig1038:112794..1128581680866407.1565874-UTR-A-nodosum_M_contig1038:112794..112858Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1038 112795..112858 +
1680866407.1711533-UTR-A-nodosum_M_contig1038:115002..1150451680866407.1711533-UTR-A-nodosum_M_contig1038:115002..115045Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1038 115003..115045 +
1680866407.2753294-UTR-A-nodosum_M_contig1038:121723..1223111680866407.2753294-UTR-A-nodosum_M_contig1038:121723..122311Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1038 121724..122311 +
1680866407.284049-UTR-A-nodosum_M_contig1038:122625..1227531680866407.284049-UTR-A-nodosum_M_contig1038:122625..122753Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1038 122626..122753 +
1680866407.2952712-UTR-A-nodosum_M_contig1038:123033..1241261680866407.2952712-UTR-A-nodosum_M_contig1038:123033..124126Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1038 123034..124126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866407.184456-CDS-A-nodosum_M_contig1038:115045..1150821680866407.184456-CDS-A-nodosum_M_contig1038:115045..115082Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 115046..115082 +
1680866407.195932-CDS-A-nodosum_M_contig1038:115721..1157931680866407.195932-CDS-A-nodosum_M_contig1038:115721..115793Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 115722..115793 +
1680866407.2054079-CDS-A-nodosum_M_contig1038:116434..1165061680866407.2054079-CDS-A-nodosum_M_contig1038:116434..116506Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 116435..116506 +
1680866407.219334-CDS-A-nodosum_M_contig1038:117827..1178991680866407.219334-CDS-A-nodosum_M_contig1038:117827..117899Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 117828..117899 +
1680866407.2294896-CDS-A-nodosum_M_contig1038:118429..1186911680866407.2294896-CDS-A-nodosum_M_contig1038:118429..118691Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 118430..118691 +
1680866407.2402766-CDS-A-nodosum_M_contig1038:120103..1203471680866407.2402766-CDS-A-nodosum_M_contig1038:120103..120347Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 120104..120347 +
1680866407.2512891-CDS-A-nodosum_M_contig1038:120563..1211411680866407.2512891-CDS-A-nodosum_M_contig1038:120563..121141Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 120564..121141 +
1680866407.2660944-CDS-A-nodosum_M_contig1038:121470..1217231680866407.2660944-CDS-A-nodosum_M_contig1038:121470..121723Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 121471..121723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1038.21.1

>prot_A-nodosum_M_contig1038.21.1 ID=prot_A-nodosum_M_contig1038.21.1|Name=mRNA_A-nodosum_M_contig1038.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=530bp
MEKLDLSGNQLSGTNLPALRGLSALGYLCLSGNQLSGAIPSELGESSTLK
YLQLSGNQLSGAIPSELGGLSALEYLCLSGNQLSDLGDVQHALELVSKFD
SDGRYYSPSGKMLYLKDNPWKMPPEAVVEQGLEAIKIFLGDVRKARENGA
QVRSLKHLKVVLVGSASAGKTSLMESIIKGTKSPTEGTLEEASTVGIDLR
HHLLQGTKVEFYDCAGQVDYAGMHQTFLTRRALYLLLWDVTLFHGLDPRY
LEKAVYRNIMRWLYTLHLRAPGATMILVANKCDGSLADFAESTERVKILV
DRLLKEWQSRRSSNHRNGGDVTVVRLLDGISRTSCVDYGGIDELVERFSK
ESATSIQVPPAWDLALEVLDDLRAGGDPLQAARAHLCLKETKGTNKKVIN
TFRTKNQLLKLWEDIVRQVSEELQSAKDMAAVSNWENALDGALWINEFAG
QILRIDRDEGIFLDVVWLSKVLSPILSHKLHAEDFPTIDLKRQGYPSSSR
CSPVGFCTTHLERCPDPCRTGIKGKIDVN*
back to top

mRNA from alignment at A-nodosum_M_contig1038:110655..124126+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1038.21.1 ID=mRNA_A-nodosum_M_contig1038.21.1|Name=mRNA_A-nodosum_M_contig1038.21.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=13472bp|location=Sequence derived from alignment at A-nodosum_M_contig1038:110655..124126+ (Ascophyllum nodosum dioecious)
GGGGCTAATCTATCAGCGCTTGGTGGATTGAGCGCTTTGGAGACACTGGA TTTATCATACAACCAGCTGAGCGGTGAGTCTGTGCGAGGCTTCTGTGCTT TCGTACTCGCCTGTCCATACGTCGTTCGAAACAATCGATATTTTACCGAG GGAAGCAATAAACGGTCATTCTTTAATAGACCGAACGTGATAAACAGTCT TGTAATATGGTTCGTCTGGCTGTAAGGTCCGCTTTTGGATTTTAGGGCCG CAATTTCGTATATGAAGATCGCAAGGCTCTCGTGCCAGATGTGATTGTGC GCACCATGGTTTTAAAAATGATGTCATAGAGCATGGTTTGAGACGGCCTG CGTTTCACAACATCGGACGTTCTCGTTATTTCGTCGGCGTCAAGATACGC CACTGTTTGCTTCGGTAATGACCTTGGCTTTCGGCCGCTCATACAAGCTA CAGAAAGGTTTTGTGTAAGCAACATCTATATCTTAGCTTTGTTCAAAATA CTGTTATTAACGACTTTATTCGGTCATGATTCGTCGGGCAGCGTCTGCGT CGAATGCCCTGTAAAGTAGCTGTTCATATTACACGGTGTACGATTTTGGT ATTCTGCGATTTGTGTCCACTCGCGACGCCTAATATCGTACATTTTTCAA TGATTAGTTCATGATGTCGTCACGCGAGCCAGATGGTTTTCGTTAAACGC TTTCGTCGCATGTGCAGGGGCTAATCTATCAGCGCTTGCTGGATTGAGCG CTTTGGAGAAACTTGATTTGTCAGGAAACCAGCTGAACGGTGAGTCTGTG CGAGGCTTTTGCGTTTTCGTACTCGCTTGTTCATATGTCGTTCGAAACAA TCGATATTTTACTGAGGGAAGCAATAAACGGTCATTTGGTCGGACGTGGT AAACAGTCTTGCGTTATGGTTTGTCTGGTGGTATGGTCCGCCTTTGGATT TCAGGGTCGCAATTTCGTACAAAAAGATCGCAAGGCCCTCGTGCCAGATG TTACTATGCTTATCGTGGTTAAAGATATCATCATATGGCATGGTTTGAGA CATCCAGCGTTTTACAACATCGGACGTTCTCGTTATTTTGTCGGTGTCGA GGTACGCCTCTGTTTGTTTCGGTAATGACCTTGGCTTTCGGCCGCTCATA CAAGCTACAGGAAGGTTTTATGTAAGCAACATCTATATCTCAGCTTTGTT CAAAATACTGTTATTAACGACTTTCTACGGTCATGATTCATCGGGGCCGT CTGCGGTGAATGCTCTGTAACGTAGCTGCTCATATTACACGGTGTGCGAT TTTGGTATTCTGAGTTTTATGCCCACTCGCGACGCCTACTATCGTATACT TTTTATTGATTGGTTCATGATTGACCTAGTCGTGGCAAGCCATATATTTT TCGTTAAACACTTCCGTCGTATGTACAGGGGCTATTCCATCAGAGCTTGG TGGGTTGAGCACTTTGAAGTATCTTTATTTGTCAGGAAACCAGCTGAGCG GTGAGTCTGTGCGAGGTTTTTGTGTTTTCGTACTCGTTTGTCCATACGTC GTTCGAACAATCGATATTTTACCAAGGGAAGCAATGAACGGCGATTTTTT AATCGATCGGACGTGGTAACAGTCTTGCATTGTGGCTTGTCCGGCGGTAA GGTCCGCCGTTGGATTTCAGGACCTTTAATTTCGTACATGGAGATCGCAA GGCCCTCGTGCCAGATGTGGTTATGCTTATCGTGGTTGCAGATATCATCA TATAGCATGGTTTAAGACGTCCAGCGTCTGACAACATCGGACGTTCTCGT TATTTTGTCGGCGTCAAGGTACGCCACTGTTTGTTTCGGTAATGACCTTG GCTTTCGGCCGCTCATACAAGCTACGGGAAGGTTTGTGTAAGCAACATCT GTGTCTCAGCTTTGTTCAAAATACTGTTGTTAACGCCTTTTTCGGTCATG GTTCATCGGGCGCCGTCCGCAGTGAATGCTCGGTAAAGTAGCTGCTCATA TTACACGGTATACGATTTTGGTACTCTGCGCTTCGTGTCCACTCGCGACG CCTACTATCGTATATTTTTAAATGATTAGTTCATGATGTAGTCATGGTAA GCCAGATGGTTTTCGATAAACCCTTCCGTCGCATGTTCAGGGGCTAATCT ATCAGCGCTTGGTGGAATGAGCGCTTTGGAGACACTTGATTTGTCAGGAA ACCAGCTGAGCGGTGAGTCTGTGCGAGGCTTTTGTGTTTTCGTACTCGCT TGTCCATAGGTCGTTCGAAACAATCGATATTTTACCGAGGGGAGCAATAA ACGGCCATTCTTTAATAGATCGGACGTGGTAAACAGTCTTGTATTATGGT TTGTCTGGCGGTATGGTCCGCGTTTGGATTACAAGGCCGCAGTTTCGAAC ATAATGATCGCAAGGCCCTCGTGCCAGATGTAAACATGCTTATCGTGGTT GTAGATATCATCATAGGGGCTGGACGACAGAGCTTTCGAAGGCAAGCTAT GTGTGGTTTCGGCCTCGACAGCCAGACCTACCGGATATTGAATCCATCCA ACGGGGCCGTGGTCGAGAGCCGAATGTGACTTTCATCGAATCTCCACCCC GCTCAGTGCCCTTCCAGTATTCCACTGAAGCAAACGGTACGAGAGCGACG TGCTGAGCTTCACCTCCCTGCTGGACAGCCCCCACTCGACGAGCGACCTG GACTTCATGGCGCAGAACGAACTCCTTCGGCAAGAAGTCCGGAAGATGCA GCAAGACAATCTCGCTCGGGAGATCTGCCTAGAACTGGACGGACACGAGG ACGAACATGGAAACGGGCAAGATCTCGGCGACGGGGACGCTCCATCACCG CATCTCCATCGACGCCAGCTGGACCGTCATCCGAGACCTACGCATCTAGC CCCAGTCCATCATCGTCGATCCCGCCTGAACCGACACTTCTGCATCACCT GGATCCTCGGCATGTGACGCCTGCAAGTCACCAGAGCCAGCACGCGCGGG AAGCCCACCAGCGACGATCATATCGACGTCAACGGATTTCTGCCAATCGA AGTCACCATGAATGACCGCGGTCAGTTTTCCATGCTACAACGGCCGCGTG AGCCATCGATCGCTTTCACTTCAGCTGGCTGAGATAGCCGGATCAAGCCC AGCTCCATGCCCTGGCGATACTGAGGATTTCGCCCACGTTGCGGAACCCC TTCCACGGTGCGCCGCTCACGCCTACGTCACGACCACTCACGAACACTAC AGGATCTTGAGGACTTAGATCAAGCGATCAAAATCCCAACACCTACGACA AGCCATGGGCTCTCCCCAGCGCGAAGAATGGAAAGAAGCGTGCAGCAGCG AAATGGATAACCAGAACACAACGTCCCTACAATCTGGTGCCCTCCAGCGC GTTCCGACATAGATCCCTCGGAACGAATTTCGTCTTCAGAAAAAAGCTGG ACGGACGCTACGCTCGCCTGGTGATCGAGGACAATCGCGTCAAGAGCTCG GGACAGGATTTACGGACGCCTGCTTCAATATGCCGTATCGGGAACATTCA TAACGTGCGCCATTGGCTGCAGACGTCCAACGTTTTAACATCCGGACGTT CTCGGTGCAGCCTGAACGCCTCTGCAAACAGAGATGTGTGCGATCAGACC CGCCCCGGTACATCCGCCAAAAGAACTCACGACGGGAAGAACCCATGGTG TACAAACTAGAACGGAGCCTCTGCAGCCTATCGCGATGCTTTACGCTCTG GAACGTTTCCTGAACGAATCCTCGCGGTGTTCGGATGGAGAAGGACTCGA AATCGACCACCTGCATTGTACGTGTCGTACCCGCTGACAACATCATCGTG ATTCTCACGGTCTACATGGGCAACTTGTTCTACTCATCACGGGGAGGAGA CCAGCAGCTCATGGACAGAAGAAGGGCTCACGGATCAATTCAGATGAGCG ACATGGGAGAGGGTAAAGGATCTCGACTGACGTGCAGTGACTACGAGCAA GGAACCCCGCTTTTCTCAGGGCGTCACGTGAACACACACTGAATATTCGA ACGAAGAGTAACCCAGACATAGCTTTCGAGTTGAACTCATCGAATCAAAG ACCAACCAGATCCACGGACAAGGTTGCCCAGTCGATGAAAGCAACATCTA TCTCCAGCTTCGCGATTCGACCTTCTTACGCCGTTCACAACTTTCCAAGG TCTGCAGCAAACCGGCAGGCAGAACATGACGTTTTCGATCAGTAATCCGT TCTTCCACGTTCACAAGAGATACAATTTAGTAGCTGGTCATACCCCGGAC AACGGAAGATCAACACGGATATTTCTTCTTCCTGCCGAGACTCATCAGCT AATGCGGGGCTATTCCATCAGAGCTTGGTGGATTGAGCGCTATGGAGAAA CTTGATTTGTCAGGAAACCAGCTGAGCGGTGAGTCTGTGCGAGGCTTTTG TGTTTTCGTACTCGCCTGTCCATACGTCGTTCGAAACAATCGATATTTTA CCAAGGGAAGCAATAAACGGCAATTTTTTTATCGATAGGATGTCGTAAAC AGTCTTGCGTTATGGTTTGTCTGGCGGTAAGGTCCGCCTTTGGATTTCAG GGCCGCAATTTCGTACATGAAGATCGCAACGTCCTCGTGCCAGATGTAAT TATGCTTGTCGTGGTTGTAGATATCATCATAGGGCATGGTTCGAGACGGC CTGCGTTTCACAACATCGGACGTTCTCGTTATTTTGTCAGCGTCAAGGTA CGCCACTGTTTGTTTCGGTAATGACCTTGACTTTCGGCCGCCCATACAAG CTACAGGAAGGTTTTGTGTAAGCAACATCTATATCTCGGCTTTGTTCAAA ATATTGTTAACAACTTTCTTCGGTCATGATTCATCGGGCGCCGTCTGCGG TGAATGCTCTGTAAAGTAGCTGCTCATATTACACGGTGTACGATTTTGGT ATTTTGCGTTTTGTGCCCCCTCGCGACGCCTGCTTTCGGGCCTTTTTCAA CGATTTGTTCATGATGTAGTCATGCGAGCCAGATTGTTTTCTTTAAACGC TCCCGTCGCATGTGCAGGGACTAATCTACCAGCGCTTCGTGGGTTGAGCG CTTTGGGGTATCTCTGTTTGTCAGGAAACCAGCTGAGCGGTGAGTCTGTG CGAGGCTTTTGCGTTTTCGTACTCGCTTGTCCATACGTCGTTCGAAACAA TCGATATTTTACTAAGGGAAGCAATAAACGGCCATTATTTAATAGATCAT ACGTGGTTAAAAGTCTTGCATTGTGGTTTGTCTTGCGGTAAGGTCCGCCT TTGGATTTCAAGGTCGCAATTTCGTACATAAAAATCGCCAAGGCCCTCGT GCCAGATGTAATTATGCTTATCGTGGTGAAAGATATCATCATACGGCATG GTTTGAGACGTCCAGCGTCTTACAACATCGGACGTTCTCGTCATTGTGTT GGCGACAAGGTACGCCACTGTTTGTTTCGGTAACGACCTTGGCTTTCGGC CGCTCATACAAGCTACAGGAAGGTTTTGTGTAAGCAACATCTATATCTCA GCTTTGTTCAAAACACTGTTACCGCCTTTCTTCGGTCATGATTCATCGGG CGCCGTCTGCGGTGAATGCTCCGTAAAGCTGCTGCTCATATTACACGGTG TACGATTTTGGCATTCTGCGTTTTGTGTCCACTCGCGACGCCTGCTATCG TATATTTTTCAATGATTGGTTCATGGCCTAGTCGTGGCGAGTCAGATATT TGTCGTTAAACACTTCGGTCGCATGTACAGGGGCTATTCCATCAGAGCTT GGTGAATCGAGCACTTTGAAGTATCTTCAACTGTCAGGAAACCAGCTGAG CGGTGAGTCTGTGCGAGGCTTTTGTGTTTTCGTACTCGCTTGTCCATACG TCGTTCGAACAATCGATATTGTACCAAGGGGAGCAATAAACGACGATTTT TTAATAGATCGGACGTGTAAACAGTCTTTTATTGTGGTTTGTCTGGCGGT AAGGTCCGCCTTTGGGTTTCAGAGCCGCAATTTCGTACATAAAGATTGCA AGGCCCTCGTGCCAGATGTAATTATGCTTATGTAGATGTCATCATATGGC ATGGTTTGAGACGGCCAGCGTTTCACAACATCGGACGTGCTCGTTATTTT GTCGGCGTCAAGGTACGCCACTGTTTGTTTCGGTAATGACCTTGGCTTTC GGGCGCTCATACAAGCTACAGGGAGGTTTTGTGTAAGCAACATCTATATC TCAGCTTTGTTCAAAATACTGTTAGCGAACTTCGTCGGTCATGATTCATC GGGCGCCGTCTGCGGTAAATGCTCGGTAAAGTAGCTTCTCATATTACACT GTGTACGATTTTGGTATTCTGCGTTTTGTGTCCACTCGCGACGCCTACTA TCGTATATTTTTCAATGATTGGTTTATAACCTAGTCGTGGCAAGCCATAT ATTTTTCGTTAAACACTTCGGTCGCATGTACAGGGGCTATTCCATCAGAG CTTGGTAGATTGAGCGCTATGGAGAAACTTGATTTGTCAGGAAACCAGCT GAGCGGTGAGTCTGTGCGAGGCTTTTGTGTGTTCGTACTCGCTTGTCCAT ACGTCGTTCGAAACAATCGATATTTTACCAAGGGGAGCAATAAACGGCGA TTTTTTAATCGATCGGACGTGGTAAACAGTCTTACATTATGGTTTGTCTG GCGGTAAGGTCCGCCTTTGGATTGCAAGGCCCTCGTTCGTGCCAGGTGTT ACGTTTATTATCATGGTTGTAGATATCATCATATGGCATGGTTTGAGACA ACTAGCGTTTTACAATAATATCGGACGTTCTCGATATTTTGTCGGCGTCA AGGTACGCAACTGTTTGCTCCGGTAATGGTTCTGGCTTTCGGTCGCTCAT ACGAGGTACACAAAGCTTTTGTGTAAGCAACATCTATATCTCAGCTTTGT TTAAAATGCTGTTAGCGAACTTCGTCGGTCATGATTCATCGGGCGGCGTC TGCGTCGAATGCCCTGTAAAGTAGCTGCTCATATTACACGGTGTGCGATT TTTGTATTCTGCGTTTTGTGTCCACTCGCGACGTCTACTATCGTATATTT TTCAATGATTGGTTGACGACCTAGCCGTGGCAAGCCATATATTTTTCGTT AAACACTTCGGTCGCATGTGCAGGGGCTATTCCATCAGAGCTTGGTGGAT TGAGCGCTTTGGAGTATCTCTGTTTGTCAGGAAACCAGCTGAGCGGTGAG TCTGTGCGAGGCTTTTGTGTTCTCGTACTCGCTTATTCATACGTCGTTCG AAACAATCGATATTTTACTAAGGAAAGCAATAAATGGCGATTGTTTTATA GATCGGACGTAGTTGACAGTCTTGCATTATAGCTTGTCTGGCGGTAAGGT CCACCTTTGGATTTCAGGGCCGTAATTTCGTACATGAAGATCGCAAAGCC GTCGGGCCAGTTGTTATCATGCATATCGTGATGTAAGAATGAATAATGTC ATAGGGCATGGGTTGACTGGATGATCTCTTTATTATGTAGGTTATAGTGT ACAGGTACGCCGCCGCTCCTTGTTCAGGTTATGCCCTTTGCTCACGGCCG CTCACACGGGGTATAGTGCATGTAGGTTGTGCGCACTTTACCGTTCCTCT TTTCTACCAAACACTTGAGGGGTAGTTCGGAGGTCATAAATCAGTAGCGT TAGGCTACATAAATACTAGTATCAGTACGAGATGAACACGGCCTGTAAGC ACCCCCCGCCCTTTTGCGTTTCCAGATCTTGGCGACGTTCAACATGCACT GGAGCTCGTATCAAAATTTGATTCCGACGGACGTTATTATTCCCCCAGCG GGAAGATGTTGTATTTGAAAGATAACCCGTGGAAAATGCCCCCTGAGGCA GTAGTAGAGCAGGGGCTGGAGGCTATCAAGATATTTCTCGGTGACGTTCG AAAGGCCAGAGAGAATGGCGCTCAAGTCAGATCCCTCAAGCATCTCAAGG TTGTCCTCGTGGGATCTGCGTCTGCGGGGAAAACCAGGTGTTTGACATTC TGCTATTGTTTAATCGTTGGATTGACAAGCTTCAAGGGAGAGCAACCTCA TATAGATCCTTTGGTGTGCTCCAATCAGAGGCAACAGCCCTTTAACATGT TTTGCTGCACCATCATAGACCCCAAGGCGCTGCACCATAGCCTTTCCGTG GGGTTCATCACCAGGATCTTAAATTAGTCTTCAAATCTGTGCGACCCTAT AAAGTGTACCAGTATTCCTCCTAAAGTGTACCAGTATTCCTCACGAATCC GCCAATACAACAGACCAACCTACACAAATTGAGGCATGTGGAACAAAACG CCGTCTACACTAAGATGGAAAGCTTCATGTTACGTCAAGATATTTCCTAA ATATGTTTTTTAGCCCTTGCTGTCCTCTCCTATGTTGGTTTTGAATATTT GCTGTGTCTGACATTGCTGTTTTTGATCCATCCCTTTTCTTACGTATAGC CATGCCCTTCCTCATCAAACTGTACATTCTGTGAAGGTATTTGATACCCA TACAGTATAAAAGAGTGTGAAAATAGTTGTTGTTTTTAATGCAATGGCGT TCGATGGTTTTATGTGTGTGCAGCCTCGTCGCCCGAGTGGTCTAGTAGGT AACCTGCACACCTGCTAGTGCGGAAGTCGTGAGTTCGGCTTTTACCAAAG TAGGATTTGTGTTCTTTCTTTCGTAAGGGAAAGCGTGGGAACGTAAGTAA GTAAAATTCAACCATTGATTGACGAGTTGTAAGAGTCCTGAACTTGCATC GCGATAAAAAACCGTAAGGCGTGAACCGGGGAGAGAAGGGAAGATCCTTT GTGACCACAGACATGATGGTAATGATGAGGTCCATCGGCTGTAATGAGAT TAGAGAAGAAAAAAAAAGTCTCCCTTTCTATCTGCCTGTGCTGTCTGTTT TAGCAAAAGAGAATGGTTTGCTGTCACGACACGCAGTGTACCTCGATGTA TCACTGTTGGCCTCTTTTTAGAACACATCGTAATTGGTGGCAGATGTGAT TTTCTTTATGACACGGTGTAAGCCTTCGCCCACATTTCACAGTACTTATT TTCTCCCGAGGGGTGACGAGTTTCGAAGTTGGCGCATGACTGTGGAAATT TTGGCCCTTGGATAATCACTACATGCCATGTGCATTCTCCGTGTTTTTTG GTTCTCTAATGCCGTAGCTTGATGAAAAGCATCATAAAGTTCCTACTTTG AAGACATTACTTAACTGGTTGCACACAAGAACTTCTTATAAATACTGTAT AATAAGCCTTCACGCAGATTTTCACATTAATGCTTTCTCCCAAGAGGTGA CGTTCCAAAGCTGGCAGCACTGTGATAGATCGAACCCTTGAATAATCGCT ACGTGACACATGCGTATCTACCGTGTTTCTTGGTTCTCTCATGCCATAGC TTGATGGAGAGCATCATCAAGGGAACTAAATCTCCAACGGAAGGGACCCT GGAGGAAGCCAGCACGGTCGGCATTGACCTACGCCACCACCTGCTACAGG GAACAAAAGTAGAGTTCTACGACTGCGCGGGTCAAGTGGACTACGCCGGC ATGCACCAAACATTCTTGACCCGACGAGCTTTGTACCTGCTGCTGTGGGA CGTAACACTATTTCATGGCCTCGACCCACGATATCTTGAGAAGGTGGGTG GTTCGCAGTTTTGTCGTGAAACTATGGCGAGTTGTTTTACACAGGTGCTT AGCAAAACTGTTAAGAAACACTACTACCCATTTCCAGGAATAACACAGCT GCTGCAGTTGCGACAAGTTAGAGCGACGCAATTGTACTTCAACCATCAAG GTTGTAAACCTGAGACTGACCATATACCTTTCCCGCGCGGATGATACCGA TGAGTTCAGGCCGTCTACAGGAACATAATGAGATGGCTGTACACCCTCCA CCTTCGAGCACCAGGGGCTACGATGATTCTGGTGGCTAACAAGTGCGACG GGTCCTTGGCTGATTTCGCAGAGTCTACAGAAAGAGTAAAAATACTTGTG GATCGTCTGTTAAAAGAATGGCAGAGTCGCCGAAGCTCGAACCACCGCAA TGGTGGAGACGTGACTGTGGTAAGGCTGCTAGACGGTATAAGTCGAACCA GCTGCGTGGACTACGGTGGAATCGATGAGTTAGTAGAGCGATTTTCAAAG GAAAGTGCAACGTCGATCCAGGTACCACCCGCATGGGATCTCGCCCTCGA GGTTCTTGACGATCTCCGGGCCGGTGGTGATCCTTTACAGGCTGCCCGAG CGCATCTGTGTTTGAAGGAGACAAAGGGAACGAACAAAAAAGTGATCAAC ACATTCAGAACAAAGAACCAACTGTTGAAACTGTGGGAAGACATCGTCCG TCAGGTTTCTGAAGAGTTACAGAGTGCGAAGGATATGGCAGCGGTCTCCA ACTGGGAAAATGCTCTCGATGGTGCACTTTGGATAAAGTGAGGCACATGA GGCCGAAAACGTTTGCTGTGTCGTGTTCACTACCATAAACAAAATGAACA TGGCGGTGGAACGTCTAGGGGGGTGTATTGAGTTGTGCTTACGGAGAGCA TGTGGCGGTCTTCCAAGCGTTTGCCGGGAATGAACTTCGTCAAAAACAAA ATATCTCATATGTAGTAAAGTTTCGTTTTTCTGGTTTTAACTCACATTCG TTTCGTAAGACTTCTGTCTATATGTAAAAAAATACGTTTCGCGAAAAATT GTTTTATTGATGATGTCGATTGACAACCTTCCCTTTGCGCCTGTTAATTT TTTGTTGTTTTTTTAGCGAATTTGCAGGACAGATTCTGCGCATCGATAGA GACGAAGGCATATTTCTTGATGTGGTGTGGCTCTCCAAGGTGTTGAGCCC CATCTTGAGCCACAAGCTTCACGCTGAAGACTTCCCAACGATCGACCTGA AAAGACAGGGATATCCTTCTTCGTCGCGGTGTTCTCCTGTGGGATTTTGC ACAACACATTTGGAGAGATGTCCTGACCCCTGCCGAACAGGGATCAAAGG GAAGATTGATGTTAATTGAATCTATTTTCCGTGTTCTCCTCAAGCTTGGC GTGATCCTTCCCCTGGGACGGCCGGCCTTTTTGTTCGACCGCAGCGGGTC GCACGCGTCACATGGCGACGGAGAATCTAAAGATATGTTGGTAATCATGC GTCTGGCCGAGGAATGTAGCGATGAACAGCGAAGAGCTATTGATTCTTCT GTCGCGAATGTACGCCGGGACTGTCGGGAGTAAAACTCAAATGGGAATGT GACGCGGCGCAATCTCCGTACGGGTTGGTGGAGCGGCTGATCTCTTCATG CAATGTCATTGGTGAAGTAGAGCAGGATCTGTGCTGGAGGTACGGGGCGT TGTTCACGAGTCCTGAAATGATTTGGGGCGATGACAGGCAGGTTCGGCTG TACAAGTTCCTCATCTCCTACGACAATCGCATGCTGTCCTTGAGGATAAT AGGTCTATTCTCAGACGACCGGGTGCTGGCCGCATTACGTTATGTGGCAT CGGCGATGGTTGTTCTTTCGATGGAATGGCCCGGAGTTCAATGGGAGGGC TGGCTGGATTGTCTGAACCATCCACAAGCCCGCATATACTTGACGCCACC AGGCGAGGTATGATCTCACTCTAGTGGAATGCAACCCAGATTTCTGTTTA AGTTAGCTGACATTTTATCTTTGCTTTGATTCTCTTACAGATATTACTTA TGTTGAGTAAGCCGCTCTTATTTTCTCAACGTTGTCGCAGGGATCATCTC TAAAGACACATACACCTATTTTCTAGACTGAATAAATGGGTCGAAGTGTG ATGTGATGTGATGTGTTATACGTTTGGACCAGGCCAGAATCGGTGGCCAG TTTTTTTTTCTAGATTGGTTGAATGGGTCGAAATTTGATGTAATGATGCT TTATACGTTTGGATCAAACAGACAAGAATCGGTGGCCCGCTGCTGGATCA GGGAGCATATGCGCACAGCATGATGTGTGACTGCCGACGAGAGGCTGATG GAGTGCTCCGGCTAGTTCGCCAACGCCTTGGCACGGTAGTCGACACAAGG CGAGGTTGTTGACACTAATTATTTGTGGCATAATTTCGGCCATATTGCAT CGCCCCTAGACATTAGGTCATAACGTCTTCCTTCGAAGTTGGAGAGGGAC ATTCACATCGAGATGTTTTATATTTTGATGCAGGGTCGTGCCCGCTTTTT CTTATACTCTGTGGATAAATATCGATTTTCCGTTCATCTAAGCAAAACGT ATGTAAAGTACTACGGGTCGCATATCACGAAGCTGTACCAAGTAACAACT AGTTGTTGCGTCACAACTATTTTTCACAGGTTATTTGTTCCAGAGGTTCG AGGAGAAAAACGCAGCTTCAGCCATACTTGAATGCTGTCGCGCAGCTTAC ACTTTTTAGCGGCCAAGGGCCTGCCGGATGGTGGGAGCCCTCGGGACGCT GGCCGTAACCCTTTTCTGTTTAGCAACCGTCCCGAGCATCGTCGAAGAGA AGGACACTCTTTGGATTACCTTCTCGTCAGTTGTGGACCTTTTGTTGGCG GCTTTGGTAGTCTCAGTTCTCGCCCACCGTAGCACGAACCGGACTTCGCA CACTCGTCCCAATGATCATGAAGTTTACCTTGGGGCGCTTCCCTTAGATT GTTTTCAAAAGCCTCTGCCATGGTGCCGTTCAAGAGGTGATTGAATCTAA AGACAGGGGTCACATCCTTTTGCTAGCAATCGGAATTTTGGTCTTGGTAA GATCTCGTACCGCGTTTGAATTCTGTAACGCTCCCAAGACGTTTTTTGCG TGATTTTGCATAAATACTAAGGGTTGGAACCAGGAATATATTTTATAGCG TGTACATGTATCACGAGCGTGGTCTTGTGGGGCAAAATTGCAAGAGTGTG TTTAAAGAAAAAATCAGAACGCGCCTAGACTTTCTGAGCATGCCCCAGTC AGGGAGGAAAAAATGTCAAAACGTTTATGTGGGATCAAGGGCTGAAAATA CAAAACCTATTCATGGTATTTAAACGGGTTCCCCGATGGATATAACATTG GGTTAAGAGTATAATGTCGGGGAGAAGCCCACCATTAGATTATACACTGG CGTTGTGTTTAAAGAAAAAACAGAACGCGCCTAGACCTTCTTGTTTTTTC TTGGCGGTTAATTATTTGCTAGTTACGTGCCTTTCTCCCGATAGTTCCTG TACGACATGCGGGCTTGCGTCTTTTAGCACACGTTGCGCCCCAGTCTATA TTTGCTATTTTCTGACCTGCTGCACATTCCCACCGCCTATTCATGTTTTG TGGTCACTGTTCGCTATGTTGGTTGTCTTAGCTGTTGGTTACCCCACGTA AGTATGCCGGCAATGTGAACCCTGTTTGCCGAAATGTGTTCGATCATCAT GGGAACGGGGATGGGAGCGGGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1038:110655..124126+

>mRNA_A-nodosum_M_contig1038.21.1 ID=mRNA_A-nodosum_M_contig1038.21.1|Name=mRNA_A-nodosum_M_contig1038.21.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at A-nodosum_M_contig1038:110655..124126+ (Ascophyllum nodosum dioecious)
ATGGAGAAACTTGATTTGTCAGGAAACCAGCTGAGCGGGACTAATCTACC
AGCGCTTCGTGGGTTGAGCGCTTTGGGGTATCTCTGTTTGTCAGGAAACC
AGCTGAGCGGGGCTATTCCATCAGAGCTTGGTGAATCGAGCACTTTGAAG
TATCTTCAACTGTCAGGAAACCAGCTGAGCGGGGCTATTCCATCAGAGCT
TGGTGGATTGAGCGCTTTGGAGTATCTCTGTTTGTCAGGAAACCAGCTGA
GCGATCTTGGCGACGTTCAACATGCACTGGAGCTCGTATCAAAATTTGAT
TCCGACGGACGTTATTATTCCCCCAGCGGGAAGATGTTGTATTTGAAAGA
TAACCCGTGGAAAATGCCCCCTGAGGCAGTAGTAGAGCAGGGGCTGGAGG
CTATCAAGATATTTCTCGGTGACGTTCGAAAGGCCAGAGAGAATGGCGCT
CAAGTCAGATCCCTCAAGCATCTCAAGGTTGTCCTCGTGGGATCTGCGTC
TGCGGGGAAAACCAGCTTGATGGAGAGCATCATCAAGGGAACTAAATCTC
CAACGGAAGGGACCCTGGAGGAAGCCAGCACGGTCGGCATTGACCTACGC
CACCACCTGCTACAGGGAACAAAAGTAGAGTTCTACGACTGCGCGGGTCA
AGTGGACTACGCCGGCATGCACCAAACATTCTTGACCCGACGAGCTTTGT
ACCTGCTGCTGTGGGACGTAACACTATTTCATGGCCTCGACCCACGATAT
CTTGAGAAGGCCGTCTACAGGAACATAATGAGATGGCTGTACACCCTCCA
CCTTCGAGCACCAGGGGCTACGATGATTCTGGTGGCTAACAAGTGCGACG
GGTCCTTGGCTGATTTCGCAGAGTCTACAGAAAGAGTAAAAATACTTGTG
GATCGTCTGTTAAAAGAATGGCAGAGTCGCCGAAGCTCGAACCACCGCAA
TGGTGGAGACGTGACTGTGGTAAGGCTGCTAGACGGTATAAGTCGAACCA
GCTGCGTGGACTACGGTGGAATCGATGAGTTAGTAGAGCGATTTTCAAAG
GAAAGTGCAACGTCGATCCAGGTACCACCCGCATGGGATCTCGCCCTCGA
GGTTCTTGACGATCTCCGGGCCGGTGGTGATCCTTTACAGGCTGCCCGAG
CGCATCTGTGTTTGAAGGAGACAAAGGGAACGAACAAAAAAGTGATCAAC
ACATTCAGAACAAAGAACCAACTGTTGAAACTGTGGGAAGACATCGTCCG
TCAGGTTTCTGAAGAGTTACAGAGTGCGAAGGATATGGCAGCGGTCTCCA
ACTGGGAAAATGCTCTCGATGGTGCACTTTGGATAAACGAATTTGCAGGA
CAGATTCTGCGCATCGATAGAGACGAAGGCATATTTCTTGATGTGGTGTG
GCTCTCCAAGGTGTTGAGCCCCATCTTGAGCCACAAGCTTCACGCTGAAG
ACTTCCCAACGATCGACCTGAAAAGACAGGGATATCCTTCTTCGTCGCGG
TGTTCTCCTGTGGGATTTTGCACAACACATTTGGAGAGATGTCCTGACCC
CTGCCGAACAGGGATCAAAGGGAAGATTGATGTTAATTGA
back to top