mRNA_A-nodosum_M_contig1038.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1038.20.1
Unique NamemRNA_A-nodosum_M_contig1038.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.20.1 vs. uniprot
Match: E6ZER2_ECTSI (NADH-ubiquinone oxidoreductase, subunit 4L n=85 Tax=Phaeophyceae TaxID=2870 RepID=E6ZER2_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 4.540e-45
Identity = 85/98 (86.73%), Postives = 92/98 (93.88%), Query Frame = 1 
Query:    4 FYSFFFIAAVLFVIGVGGVVLNRTNIVVVLMSLELALLLVSLNFIIFSVCLGDLIGQMFAIFILIIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 297
            F  FFF++ +LFVIGVGGV+LNRTNIVVVLMSLELALL VSLNFIIFS CLGDL GQ+FAIFIL+IAACESS+GLAIILVYFRVRGSIRIDQASLLKS
Sbjct:    3 FIHFFFVSTLLFVIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSVGLAIILVYFRVRGSIRIDQASLLKS 100
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.20.1 vs. uniprot
Match: Q94Z11_PYLLI (NADH dehydrogenase subunit 4L n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z11_PYLLI)

HSP 1 Score: 143 bits (360), Expect = 1.770e-42
Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:    4 FYSFFFIAAVLFVIGVGGVVLNRTNIVVVLMSLELALLLVSLNFIIFSVCLGDLIGQMFAIFILIIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 297
            F  FF+++ +LF+IGVGGV+ NRTNIVVVLMSLELALL VSLNFIIFSVCL DL GQ+FAIFIL+IAACESSIGLAIILV+FRVRGSIR+DQASLLKS
Sbjct:    3 FIHFFYLSTLLFIIGVGGVIFNRTNIVVVLMSLELALLSVSLNFIIFSVCLDDLTGQIFAIFILVIAACESSIGLAIILVFFRVRGSIRLDQASLLKS 100
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.20.1 vs. uniprot
Match: A0A1L2F1H7_9PHAE (Nad4L n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H7_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 2.900e-39
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:   52 GGVVLNRTNIVVVLMSLELALLLVSLNFIIFSVCLGDLIGQMFAIFILIIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 297
            GGVVLNRTNIVVVLMSLELALL VSLNFIIFSVCL DLIGQ+FAIFILI+AACESSIGLAIILVYFRVRGSIRIDQASLLKS
Sbjct:   20 GGVVLNRTNIVVVLMSLELALLSVSLNFIIFSVCLADLIGQIFAIFILIVAACESSIGLAIILVYFRVRGSIRIDQASLLKS 101
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.20.1 vs. uniprot
Match: A0A8E8PEE6_9PHAE (Nad4L n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PEE6_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.890e-37
Identity = 73/94 (77.66%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:   16 FFIAAVLFVIGVGGVVLNRTNIVVVLMSLELALLLVSLNFIIFSVCLGDLIGQMFAIFILIIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 297
            FFI+++ +++GV GV+ N+TNIVV+LMSLELALL VSL F+IFSVCLGDL GQ+FAI+IL+IAACESSIGLAIILVYFRV+GSIR+DQASLLKS
Sbjct:    7 FFISSLFYILGVLGVLFNKTNIVVILMSLELALLGVSLGFLIFSVCLGDLQGQIFAIYILVIAACESSIGLAIILVYFRVKGSIRLDQASLLKS 100
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.20.1 vs. uniprot
Match: Q2TUC4_DICDH (NADH dehydrogenase subunit 4L n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUC4_DICDH)

HSP 1 Score: 126 bits (316), Expect = 8.970e-36
Identity = 69/93 (74.19%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:   19 FIAAVLFVIGVGGVVLNRTNIVVVLMSLELALLLVSLNFIIFSVCLGDLIGQMFAIFILIIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 297
            ++ +++F IGVGGV+LNRTNI+ +LMSLE++L  +SLNF+IFSV L D+IGQ+FA+FIL IAACESSIGLAIILVY+RVRGSIRIDQASLLKS
Sbjct:    8 YVTSLMFFIGVGGVILNRTNILAILMSLEISLFSISLNFLIFSVYLDDMIGQIFALFILTIAACESSIGLAIILVYYRVRGSIRIDQASLLKS 100
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.20.1 vs. uniprot
Match: A0A8F0FEY2_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FEY2_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.270e-35
Identity = 68/93 (73.12%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:   19 FIAAVLFVIGVGGVVLNRTNIVVVLMSLELALLLVSLNFIIFSVCLGDLIGQMFAIFILIIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 297
            F+ +++F IGVGGVVLNRTNI+ +LMSLE+AL  VSLNF+IFSV L D++GQ+FA+FIL +AACESS+GLAIILVY+RVRGSIR+DQA+LLKS
Sbjct:    8 FVISLMFFIGVGGVVLNRTNILAILMSLEIALFSVSLNFLIFSVYLDDIMGQIFAVFILAVAACESSVGLAIILVYYRVRGSIRVDQAALLKS 100
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.20.1 vs. uniprot
Match: A0A4Y5T8D2_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8D2_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.990e-34
Identity = 67/93 (72.04%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:   19 FIAAVLFVIGVGGVVLNRTNIVVVLMSLELALLLVSLNFIIFSVCLGDLIGQMFAIFILIIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 297
            +I +++F IG+ GVV NRTNI+ VLMSLE++L  +SLNF+IFSV L D+IGQ+FA+FIL +AACESSIGLAIILVY+RVRGSIR+DQASLLKS
Sbjct:    8 YITSLMFFIGIAGVVFNRTNILAVLMSLEISLFSISLNFLIFSVYLDDIIGQIFALFILTVAACESSIGLAIILVYYRVRGSIRVDQASLLKS 100
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.20.1 vs. uniprot
Match: A0A4Y5T7L0_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A4Y5T7L0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.100e-28
Identity = 60/96 (62.50%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    7 YSFFFIAAVLFVIGVGGVVLNRTNIVVVLMSLELALLLVSLNFIIFSVCLGDLIGQMFAIFILIIAACESSIGLAIILVYFRVRGSIRIDQASLLK 294
            YS  FI  ++  IGV G+VLNRTNI+ +LMSLE+ LL +SLNF++FSV L D+IGQ+F I ++ +AACESS+GLA+ILVY+RVRGSI +D+ASLL+
Sbjct:   11 YSLLFI--IMLFIGVFGIVLNRTNILAILMSLEIGLLSISLNFLLFSVFLDDIIGQLFGILVISVAACESSVGLALILVYYRVRGSILLDKASLLR 104
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.20.1 vs. uniprot
Match: A0A7S6ZPE7_9STRA (Nad4L n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPE7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.580e-28
Identity = 56/98 (57.14%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    4 FYSFFFIAAVLFVIGVGGVVLNRTNIVVVLMSLELALLLVSLNFIIFSVCLGDLIGQMFAIFILIIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 297
            F  F  +   +F +G+GG+VLNRTNI+++LMS+E++LL + LNF+I SV L D++GQ+F +FIL +A CESSIGLAIIL Y+RVRG IR+++ASL+K+
Sbjct:    3 FLQFCLLTTAMFFLGIGGIVLNRTNILILLMSIEVSLLALGLNFLILSVYLDDILGQVFCLFILTVAGCESSIGLAIILAYYRVRGRIRMNEASLMKA 100
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.20.1 vs. uniprot
Match: A0A481WBS0_GUITH (NADH dehydrogenase subunit 4L n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A481WBS0_GUITH)

HSP 1 Score: 103 bits (256), Expect = 1.290e-26
Identity = 54/95 (56.84%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:   10 SFFFIAAVLFVIGVGGVVLNRTNIVVVLMSLELALLLVSLNFIIFSVCLGDLIGQMFAIFILIIAACESSIGLAIILVYFRVRGSIRIDQASLLK 294
             F F+A  LF+IGV G++LNR NI+++LMS+EL LL +  NFI+FSV L D++GQ+FA FIL +AA ES+IGLAI+++Y+R+RGS+ I+  +LLK
Sbjct:    7 KFLFVATSLFLIGVCGIMLNRKNIIIMLMSVELMLLAIDFNFIVFSVFLDDIVGQIFAFFILTVAAAESAIGLAILVIYYRIRGSVSIEYINLLK 101
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1038.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E6ZER2_ECTSI4.540e-4586.73NADH-ubiquinone oxidoreductase, subunit 4L n=85 Ta... [more]
Q94Z11_PYLLI1.770e-4282.65NADH dehydrogenase subunit 4L n=1 Tax=Pylaiella li... [more]
A0A1L2F1H7_9PHAE2.900e-3995.12Nad4L n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
A0A8E8PEE6_9PHAE1.890e-3777.66Nad4L n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID... [more]
Q2TUC4_DICDH8.970e-3674.19NADH dehydrogenase subunit 4L n=1 Tax=Dictyota dic... [more]
A0A8F0FEY2_9PHAE1.270e-3573.12NADH dehydrogenase subunit 4L n=1 Tax=Protohalopte... [more]
A0A4Y5T8D2_9PHAE2.990e-3472.04NADH dehydrogenase subunit 4L n=1 Tax=Dictyopteris... [more]
A0A4Y5T7L0_9PHAE2.100e-2862.50NADH dehydrogenase subunit 4L n=1 Tax=Ishige okamu... [more]
A0A7S6ZPE7_9STRA2.580e-2857.14Nad4L n=1 Tax=Schizocladia ischiensis TaxID=196139... [more]
A0A481WBS0_GUITH1.290e-2656.84NADH dehydrogenase subunit 4L n=1 Tax=Guillardia t... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1038contigA-nodosum_M_contig1038:84725..85024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1082933.MEA186_18295
Preferred namenuoK
PFAMsOxidored_q2
Model size300
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00061
KEGG koko:K00340
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114
Exons1
Evalue3.48e-26
EggNOG OGsCOG0713@1|root,COG0713@2|Bacteria,1RH0S@1224|Proteobacteria,2U93P@28211|Alphaproteobacteria,43KFI@69277|Phyllobacteriaceae
EC1.6.5.3
DescriptionNDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Cds size300
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866407.0770674-CDS-A-nodosum_M_contig1038:84724..850241680866407.0770674-CDS-A-nodosum_M_contig1038:84724..85024Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 84725..85024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1038.20.1prot_A-nodosum_M_contig1038.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1038 84725..85024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1038.20.1

>prot_A-nodosum_M_contig1038.20.1 ID=prot_A-nodosum_M_contig1038.20.1|Name=mRNA_A-nodosum_M_contig1038.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=100bp
GFYSFFFIAAVLFVIGVGGVVLNRTNIVVVLMSLELALLLVSLNFIIFSV
CLGDLIGQMFAIFILIIAACESSIGLAIILVYFRVRGSIRIDQASLLKS*
back to top

mRNA from alignment at A-nodosum_M_contig1038:84725..85024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1038.20.1 ID=mRNA_A-nodosum_M_contig1038.20.1|Name=mRNA_A-nodosum_M_contig1038.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at A-nodosum_M_contig1038:84725..85024+ (Ascophyllum nodosum dioecious)
GGATTTTATTCTTTTTTTTTTATAGCCGCTGTATTATTTGTTATTGGTGT
AGGGGGGGTTGTTTTAAATCGAACTAACATCGTGGTTGTTTTAATGTCTT
TAGAGCTTGCTCTTCTTTTAGTAAGTCTAAATTTTATTATATTTTCTGTA
TGTTTAGGGGATCTAATAGGCCAAATGTTTGCTATTTTTATTCTTATAAT
TGCTGCTTGTGAGTCATCTATCGGGCTAGCCATTATTTTAGTTTATTTTC
GTGTTCGTGGCAGTATTCGCATAGATCAAGCTTCGTTATTAAAATCGTAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1038:84725..85024+

>mRNA_A-nodosum_M_contig1038.20.1 ID=mRNA_A-nodosum_M_contig1038.20.1|Name=mRNA_A-nodosum_M_contig1038.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at A-nodosum_M_contig1038:84725..85024+ (Ascophyllum nodosum dioecious)
GGATTTTATTCTTTTTTTTTTATAGCCGCTGTATTATTTGTTATTGGTGT
AGGGGGGGTTGTTTTAAATCGAACTAACATCGTGGTTGTTTTAATGTCTT
TAGAGCTTGCTCTTCTTTTAGTAAGTCTAAATTTTATTATATTTTCTGTA
TGTTTAGGGGATCTAATAGGCCAAATGTTTGCTATTTTTATTCTTATAAT
TGCTGCTTGTGAGTCATCTATCGGGCTAGCCATTATTTTAGTTTATTTTC
GTGTTCGTGGCAGTATTCGCATAGATCAAGCTTCGTTATTAAAATCGTAG
back to top