mRNA_A-nodosum_M_contig1038.19.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1038.19.1
Unique NamemRNA_A-nodosum_M_contig1038.19.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1038.19.1 vs. uniprot
Match: A0A6H5JKZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.310e-14
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 DSTGALSVAGNSMSSARTKHIVLRYFFVRELVKKNKTTLHYTPTKQMLADI 153
            DSTGAL+VAGN+M S RTKH+ LRYFF+RELV + + TLH+ P++  LADI
Sbjct:  202 DSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADI 252
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.19.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.010e-13
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 DSTGALSVAGNSMSSARTKHIVLRYFFVRELVKKNKTTLHYTPTKQMLADI 153
            DSTGAL+VAGN+M S RTKH+ LRYFF+RELV + + TLH+ P++  LADI
Sbjct:  261 DSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADI 311
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.19.1 vs. uniprot
Match: A0A6H5K798_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K798_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.060e-13
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 DSTGALSVAGNSMSSARTKHIVLRYFFVRELVKKNKTTLHYTPTKQMLADI 153
            DSTGAL+VAGN+M S RTKH+ LRYFF+RELV + + TLH+ P++  LADI
Sbjct:  271 DSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADI 321
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.19.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.410e-13
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 DSTGALSVAGNSMSSARTKHIVLRYFFVRELVKKNKTTLHYTPTKQMLADI 153
            DSTGAL+VAGN+M S RTKH+ LRYFF+RELV + + TLH+ P++  LADI
Sbjct:  421 DSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADI 471
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.19.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.420e-13
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 DSTGALSVAGNSMSSARTKHIVLRYFFVRELVKKNKTTLHYTPTKQMLADI 153
            DSTGAL+VAGN+M S RTKH+ LRYFF+RELV + + TLH+ P++  LADI
Sbjct:  629 DSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADI 679
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.19.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.420e-13
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 DSTGALSVAGNSMSSARTKHIVLRYFFVRELVKKNKTTLHYTPTKQMLADI 153
            DSTGAL+VAGN+M S RTKH+ LRYFF+RELV + + TLH+ P++  LADI
Sbjct:  785 DSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADI 835
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.19.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.420e-13
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 DSTGALSVAGNSMSSARTKHIVLRYFFVRELVKKNKTTLHYTPTKQMLADI 153
            DSTGAL+VAGN+M S RTKH+ LRYFF+RELV + + TLH+ P++  LADI
Sbjct: 1016 DSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADI 1066
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.19.1 vs. uniprot
Match: A0A6H5KMQ5_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.150e-13
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 DSTGALSVAGNSMSSARTKHIVLRYFFVRELVKKNKTTLHYTPTKQMLADI 153
            DSTGAL+VAGN+M S RTKH+ LRYFF+R LV + + TLH+ P++  LADI
Sbjct:  144 DSTGALTVAGNAMHSQRTKHVALRYFFIRGLVLRGQITLHHRPSEHQLADI 194
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.19.1 vs. uniprot
Match: A0A6H5KEW7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEW7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.540e-13
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 DSTGALSVAGNSMSSARTKHIVLRYFFVRELVKKNKTTLHYTPTKQMLADI 153
            D TGAL+VAGN+M S RTKH+ LRYFF+RELV + + TLH+ P++  LADI
Sbjct:  254 DGTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADI 304
[Close]
BLAST of mRNA_A-nodosum_M_contig1038.19.1 vs. uniprot
Match: A0A6H5L5K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.230e-13
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 DSTGALSVAGNSMSSARTKHIVLRYFFVRELVKKNKTTLHYTPTKQMLADI 153
            DSTGAL+VAGN+M S RTKH+ LRYFF+REL  + + TLH+ P++  LADI
Sbjct:  261 DSTGALTVAGNAMHSQRTKHVALRYFFIRELALRGQITLHHRPSEHQLADI 311
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1038.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKZ9_9PHAE6.310e-1464.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S5_9PHAE1.010e-1364.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K798_9PHAE1.060e-1364.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE1.410e-1364.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.420e-1364.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.420e-1364.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJR8_9PHAE1.420e-1364.71Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KMQ5_9PHAE3.150e-1362.75Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEW7_9PHAE3.540e-1362.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5K4_9PHAE4.230e-1362.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1038contigA-nodosum_M_contig1038:63874..64026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6334.EFV56955
Model size154
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.83e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3A8FB@33154|Opisthokonta
Descriptiontransposition, RNA-mediated
Cds size153
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866407.0280056-CDS-A-nodosum_M_contig1038:63873..640261680866407.0280056-CDS-A-nodosum_M_contig1038:63873..64026Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 63874..64026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1038.19.1prot_A-nodosum_M_contig1038.19.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1038 63874..64026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1038.19.1

>prot_A-nodosum_M_contig1038.19.1 ID=prot_A-nodosum_M_contig1038.19.1|Name=mRNA_A-nodosum_M_contig1038.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
DSTGALSVAGNSMSSARTKHIVLRYFFVRELVKKNKTTLHYTPTKQMLAD
I
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mRNA from alignment at A-nodosum_M_contig1038:63874..64026-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1038.19.1 ID=mRNA_A-nodosum_M_contig1038.19.1|Name=mRNA_A-nodosum_M_contig1038.19.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig1038:63874..64026- (Ascophyllum nodosum dioecious)
GACAGCACAGGAGCACTCAGCGTTGCGGGAAATAGCATGTCCAGTGCCAG
GACCAAGCATATCGTCCTTCGGTACTTCTTCGTGCGCGAGCTTGTCAAGA
AGAACAAGACCACCCTTCACTACACGCCGACCAAGCAGATGCTCGCGGAC
ATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1038:63874..64026-

>mRNA_A-nodosum_M_contig1038.19.1 ID=mRNA_A-nodosum_M_contig1038.19.1|Name=mRNA_A-nodosum_M_contig1038.19.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig1038:63874..64026- (Ascophyllum nodosum dioecious)
GACAGCACAGGAGCACTCAGCGTTGCGGGAAATAGCATGTCCAGTGCCAG
GACCAAGCATATCGTCCTTCGGTACTTCTTCGTGCGCGAGCTTGTCAAGA
AGAACAAGACCACCCTTCACTACACGCCGACCAAGCAGATGCTCGCGGAC
ATC
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