mRNA_A-nodosum_M_contig1038.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1038.12.1
Unique NamemRNA_A-nodosum_M_contig1038.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1038.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1038contigA-nodosum_M_contig1038:15140..15462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size323
Hectar predicted targeting categorysignal peptide
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866406.932854-CDS-A-nodosum_M_contig1038:15139..154571680866406.932854-CDS-A-nodosum_M_contig1038:15139..15457Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1038 15140..15457 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866406.9428902-UTR-A-nodosum_M_contig1038:15457..154621680866406.9428902-UTR-A-nodosum_M_contig1038:15457..15462Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1038 15458..15462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1038.12.1prot_A-nodosum_M_contig1038.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1038 15140..15457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1038.12.1

>prot_A-nodosum_M_contig1038.12.1 ID=prot_A-nodosum_M_contig1038.12.1|Name=mRNA_A-nodosum_M_contig1038.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=106bp
MLVYYLPKPLFVYVFMVLISISRTILVTVCITVVRLGYDWRLCMVINISV
QCNGGLLPDMILLNQGYYQWGARLNIMYWICTYSLCNVSYYYHVWWCTTL
SLICF*
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mRNA from alignment at A-nodosum_M_contig1038:15140..15462-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1038.12.1 ID=mRNA_A-nodosum_M_contig1038.12.1|Name=mRNA_A-nodosum_M_contig1038.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=323bp|location=Sequence derived from alignment at A-nodosum_M_contig1038:15140..15462- (Ascophyllum nodosum dioecious)
ACAGTATGCTAGTGTACTATTTACCCAAGCCCCTATTCGTGTATGTCTTC
ATGGTACTAATATCGATAAGTAGGACTATACTCGTAACTGTATGTATTAC
TGTGGTTAGGTTGGGGTATGATTGGCGGCTGTGCATGGTGATTAATATAA
GTGTACAGTGCAACGGTGGGCTTCTCCCCGACATGATACTGTTGAACCAA
GGTTACTACCAGTGGGGAGCCCGGTTAAATATCATGTATTGGATTTGTAC
TTATAGCCTTTGTAATGTATCTTACTACTACCATGTGTGGTGGTGTACTA
CATTGTCTCTGATTTGCTTCTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1038:15140..15462-

>mRNA_A-nodosum_M_contig1038.12.1 ID=mRNA_A-nodosum_M_contig1038.12.1|Name=mRNA_A-nodosum_M_contig1038.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at A-nodosum_M_contig1038:15140..15462- (Ascophyllum nodosum dioecious)
ATGCTAGTGTACTATTTACCCAAGCCCCTATTCGTGTATGTCTTCATGGT
ACTAATATCGATAAGTAGGACTATACTCGTAACTGTATGTATTACTGTGG
TTAGGTTGGGGTATGATTGGCGGCTGTGCATGGTGATTAATATAAGTGTA
CAGTGCAACGGTGGGCTTCTCCCCGACATGATACTGTTGAACCAAGGTTA
CTACCAGTGGGGAGCCCGGTTAAATATCATGTATTGGATTTGTACTTATA
GCCTTTGTAATGTATCTTACTACTACCATGTGTGGTGGTGTACTACATTG
TCTCTGATTTGCTTCTAA
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