mRNA_A-nodosum_M_contig10368.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10368.8.1
Unique NamemRNA_A-nodosum_M_contig10368.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10368.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10368contigA-nodosum_M_contig10368:12837..14985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size443
Hectar predicted targeting categoryother localisation
Exons2
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866406.0478585-CDS-A-nodosum_M_contig10368:12837..129131680866406.0478585-CDS-A-nodosum_M_contig10368:12837..12913Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10368 12838..12913 -
1680866406.0580227-CDS-A-nodosum_M_contig10368:14620..149851680866406.0580227-CDS-A-nodosum_M_contig10368:14620..14985Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10368 14621..14985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10368.8.1prot_A-nodosum_M_contig10368.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10368 12838..14985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10368.8.1

>prot_A-nodosum_M_contig10368.8.1 ID=prot_A-nodosum_M_contig10368.8.1|Name=mRNA_A-nodosum_M_contig10368.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=147bp
GEVPIISLASCCPTLSALMWKMMMSEEERIIQAFLSHKWAAQIRMDEVLE
DYQLTWEVLFQKNDAISKSRNPNKGSHVKEFQPAFLPDQKRDRYSVPLLM
DGKILTDTWGPRGWPPTTRGSSGYKMIISEDLEDAAVKAVAVAEIYS
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mRNA from alignment at A-nodosum_M_contig10368:12837..14985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10368.8.1 ID=mRNA_A-nodosum_M_contig10368.8.1|Name=mRNA_A-nodosum_M_contig10368.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2149bp|location=Sequence derived from alignment at A-nodosum_M_contig10368:12837..14985- (Ascophyllum nodosum dioecious)
GGGGAAGTTCCCATAATCAGCCTCGCCTCGTGCTGCCCCACCCTGTCCGC
CCTGATGTGGAAGATGATGATGTCGGAGGAGGAGAGGATCATCCAGGCGT
TCCTCTCCCACAAGTGGGCCGCCCAGATCCGGATGGACGAGGTGCTGGAA
GACTACCAGCTGACCTGGGAGGTGTTGTTCCAGAAGAATGACGCCATCTC
CAAGTCCAGGAACCCGAACAAGGGCTCCCACGTAAAGGAGTTCCAGCCTG
CCTTTCTTCCAGACCAGAAGCGGGATAGGTACAGTGTGCCGCTGCTGATG
GACGGGAAGATACTGACCGACACATGGGGGCCAAGGGGGTGGCCACCTAC
TACACGAGGGAGCAGGTGGCCTTGTGGTTGGAGACGGAGGAGTGGTATGA
CTAGGTGCCGATGTTCATGTTCTTGTCAAGTTAATGGTGTAGATGTGGGT
CCACCTCGCCTTGCTGTTGTTGATGATGTTGGAGAAACGGCGACCCCACC
ACCCCCTTGATGGAAGTCAACGAGTACTGCACCTTGCGGCGGCCATCGTT
GTTGGTGTTGAGAATACGCAAGATGTCATGTGGTGGAACTCTGTGACTTC
CATCAAGGCGGTGGTGGGGTCGCCGTTTCTTCGACCTCATCAGCAAGGCG
AGGTGAACCCACAATCACGGCCGCCAAAGCTCGCGCTGTTACTCAAGTTA
TGCTGGGCTCGCTAGGTAACGAGACCGGGGGCTTAAAAAAGACCGTTCCA
AGAATGGCGATCGATTTGGTTGCCGAGCAGAGATGACAAGAAATATTTAC
AAGAAAATTATTGGAATCTTCCCGGTGGTTGTTGTGTTCTTTTGAAGTGG
CTGAAAGCCCTAATATCATTAGAGCTAACACATTAGCTACAATTAATCAT
ACAAAATCATTGATGTATTGGTACATGAATAGTTAACAATAGATTGTTAA
TTTGTTAATGCTGCCGAAAGGAATAGGCAGATGACAAAAAGGTTCAGGTT
CCTGGTACGGTATGTATAGGCTCTATAAGCTCCACGGTATATGCCGCACA
GTTAATCCTATAAAGATACAAGTAAGTAGATGATGCGTTTTTTCACGTAT
ATTATGAGGCACGCTATGAAATATTAATACACACTATATACCGTTCTGTA
CTATACTGTACTATATATGTACATGAATATGTATATGGATATTTATCATT
TTGGGAGGGAGAGGGACGTGTAGTGTAGTCCATGTATAGTAATGCATACC
GATTGTCAACCCGTTTTCAATCCTTCCGACGGATAATTGACGGACAGTAT
GCCGAAAGTTCAAGGAATAACCGTGCCAGCATTGAAAAACCCGACTGTAC
CAAAATACCGGTCGCCCCGGTAGCCCAGAAGAGGTAACCTCGTAACCTTC
TGGCACGTTGGGACGCGAGTTCGATCCCGGCAAACGGAATTTTTTTCACT
AAAAAATAAGAAATACAAATAAAAATGCTCAACGAGTGGAGAACGATTAA
TTAAATCGTTAGTACACAAAATTCGACTTCACGGTCGACGAGGGAAAGGA
ATGGCTGAATCCTTCTCGCGAGAAAAATTAAGGCACGCACCGCAGAAGGA
AGGTATTTAGATGAAAATTCCTGTGTGATCTTCCTCCTGTGTGACCCCGG
CTGGTACGTCCAACGAACTTGATGTCCAGAATGAATGGGAATAAAACAAC
ACACACACACACGCACACACACTGAAACCCTTTCCTTCAACGATATTAAT
AGTCCGTGCATGAAGATGTGTACTGTAACTGTACTTGGAAGTACTAATCA
ATGCAGTGTCTAAAGAAAAATCTGAATGCACCTAGACATTCTGAGCAGTG
TCGCTCTCACTGTTACTGTCACACAAATTGTTTGTTTATTGGTTGGTGCT
ACTAATGATGCTATAAGTATTGTTTACAGTAGTATTTGTAATACTCGTAC
CCGACTCTACTGATTGTGGATTGCTCTTTTGTTACAGTACTTTTAGAATA
TTGCTCTAATCTTTTTGTGTTTGGTCTGCGTGTCTGTGTCTGTGTGTCTG
TTGTGTGCTTATCGCCATGCAGCGGCTACAAGATGATAATCTCTGAGGAC
TTGGAGGATGCTGCTGTAAAGGCGGTGGCCGTGGCCGAGATCTACAGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10368:12837..14985-

>mRNA_A-nodosum_M_contig10368.8.1 ID=mRNA_A-nodosum_M_contig10368.8.1|Name=mRNA_A-nodosum_M_contig10368.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=441bp|location=Sequence derived from alignment at A-nodosum_M_contig10368:12837..14985- (Ascophyllum nodosum dioecious)
GGGGAAGTTCCCATAATCAGCCTCGCCTCGTGCTGCCCCACCCTGTCCGC
CCTGATGTGGAAGATGATGATGTCGGAGGAGGAGAGGATCATCCAGGCGT
TCCTCTCCCACAAGTGGGCCGCCCAGATCCGGATGGACGAGGTGCTGGAA
GACTACCAGCTGACCTGGGAGGTGTTGTTCCAGAAGAATGACGCCATCTC
CAAGTCCAGGAACCCGAACAAGGGCTCCCACGTAAAGGAGTTCCAGCCTG
CCTTTCTTCCAGACCAGAAGCGGGATAGGTACAGTGTGCCGCTGCTGATG
GACGGGAAGATACTGACCGACACATGGGGGCCAAGGGGGTGGCCACCTAC
TACACGAGGGAGCAGCGGCTACAAGATGATAATCTCTGAGGACTTGGAGG
ATGCTGCTGTAAAGGCGGTGGCCGTGGCCGAGATCTACAGT
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