mRNA_A-nodosum_M_contig10361.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10361.2.1
Unique NamemRNA_A-nodosum_M_contig10361.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10361.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10361contigA-nodosum_M_contig10361:633..1652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size859
Hectar predicted targeting categoryother localisation
Exons2
Cds size615
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866405.7607255-UTR-A-nodosum_M_contig10361:632..8031680866405.7607255-UTR-A-nodosum_M_contig10361:632..803Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10361 633..803 -
1680866405.8568194-UTR-A-nodosum_M_contig10361:1579..16521680866405.8568194-UTR-A-nodosum_M_contig10361:1579..1652Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10361 1580..1652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866405.8350434-CDS-A-nodosum_M_contig10361:803..9691680866405.8350434-CDS-A-nodosum_M_contig10361:803..969Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10361 804..969 -
1680866405.8467798-CDS-A-nodosum_M_contig10361:1130..15791680866405.8467798-CDS-A-nodosum_M_contig10361:1130..1579Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10361 1131..1579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10361.2.1prot_A-nodosum_M_contig10361.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10361 804..1579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10361.2.1

>prot_A-nodosum_M_contig10361.2.1 ID=prot_A-nodosum_M_contig10361.2.1|Name=mRNA_A-nodosum_M_contig10361.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=205bp
MIMKNLPPPTTSPRTVHPDDVMRGHRDGKNSPQERPRASEKKEKVVVNGT
PSTDEGGDFISHIEVETDQEPTQLADRHSELAILWQQGTTAKSTDWGGDC
PIQADFVENTNNAVTATRVAAHEEAAIGKHRQGTASTDENKAVRSRRDEC
CNGSSRSMIKGYCCIGDFLLYVTKRRVTFSRGADARQLVVSSKCFELVFY
KQTV*
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mRNA from alignment at A-nodosum_M_contig10361:633..1652-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10361.2.1 ID=mRNA_A-nodosum_M_contig10361.2.1|Name=mRNA_A-nodosum_M_contig10361.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1020bp|location=Sequence derived from alignment at A-nodosum_M_contig10361:633..1652- (Ascophyllum nodosum dioecious)
TCCGAATTACATTGATAATTTGCACAACAGATTGATCAAGGTACAGCAGG
GAGTCTTGCCGCCGACTCTTAAAATGATTATGAAGAATCTTCCACCGCCT
ACAACTTCACCAAGAACAGTGCATCCCGATGATGTCATGAGGGGACATCG
GGACGGGAAAAACAGCCCACAGGAGCGACCACGAGCCTCGGAGAAAAAGG
AAAAGGTGGTTGTAAACGGCACCCCGAGCACGGATGAGGGGGGAGATTTT
ATTTCCCATATCGAGGTCGAGACGGACCAGGAACCAACACAACTCGCCGA
TCGTCATTCCGAACTGGCGATACTTTGGCAACAAGGGACAACAGCAAAAA
GCACAGATTGGGGGGGAGACTGCCCCATTCAAGCAGACTTCGTGGAGAAC
ACGAATAATGCAGTTACAGCAACACGAGTCGCCGCCCACGAGGAGGCTGC
GATTGGCAAACATCGGCAAGGGACGGCATCTACTGACGAGAACAAAGCAG
TACGATCCCGGAGGGACGAGTGGTGATCCGTTAATTTCTGCCTAGTGGCC
ATGCTGTATACTGTATGCTTTGTTGTGCGTATTTTTGTTTGTTTGCCTTC
CTCGCAATTTTCAATGTTATCATGTCAGGTTCCTCTAAAGATGAAAGAGA
TCGAGACATGCAAACCAGAGGAGCAGCTTTGAGCTGCAATGGATCATCTC
GGTCCATGATCAAAGGGTACTGTTGCATCGGAGATTTTCTTTTGTACGTG
ACAAAAAGGAGAGTAACTTTTTCGCGTGGTGCTGACGCCCGCCAATTAGT
AGTTAGCTCCAAATGTTTTGAATTGGTTTTTTACAAGCAAACTGTTTGAT
CACGGCATCAGAATGGTATCTTGTCTACGAGATAATCAAGTTGGAAAATC
CACGTGCATACGCAACAAATTGTCATTCTGAAGTAGATTTTTTTCGTGAC
GTGATGTGACGAACCGTTCCAAGGAGATAGGTGATCGATTGGTTGCCGTG
ACGTGACGGACGATTTGAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10361:633..1652-

>mRNA_A-nodosum_M_contig10361.2.1 ID=mRNA_A-nodosum_M_contig10361.2.1|Name=mRNA_A-nodosum_M_contig10361.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=615bp|location=Sequence derived from alignment at A-nodosum_M_contig10361:633..1652- (Ascophyllum nodosum dioecious)
ATGATTATGAAGAATCTTCCACCGCCTACAACTTCACCAAGAACAGTGCA
TCCCGATGATGTCATGAGGGGACATCGGGACGGGAAAAACAGCCCACAGG
AGCGACCACGAGCCTCGGAGAAAAAGGAAAAGGTGGTTGTAAACGGCACC
CCGAGCACGGATGAGGGGGGAGATTTTATTTCCCATATCGAGGTCGAGAC
GGACCAGGAACCAACACAACTCGCCGATCGTCATTCCGAACTGGCGATAC
TTTGGCAACAAGGGACAACAGCAAAAAGCACAGATTGGGGGGGAGACTGC
CCCATTCAAGCAGACTTCGTGGAGAACACGAATAATGCAGTTACAGCAAC
ACGAGTCGCCGCCCACGAGGAGGCTGCGATTGGCAAACATCGGCAAGGGA
CGGCATCTACTGACGAGAACAAAGCAGTACGATCCCGGAGGGACGAGTGC
TGCAATGGATCATCTCGGTCCATGATCAAAGGGTACTGTTGCATCGGAGA
TTTTCTTTTGTACGTGACAAAAAGGAGAGTAACTTTTTCGCGTGGTGCTG
ACGCCCGCCAATTAGTAGTTAGCTCCAAATGTTTTGAATTGGTTTTTTAC
AAGCAAACTGTTTGA
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