mRNA_A-nodosum_M_contig10360.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10360.4.1
Unique NamemRNA_A-nodosum_M_contig10360.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10360.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10360contigA-nodosum_M_contig10360:6404..6815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size187
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size117
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866405.710049-UTR-A-nodosum_M_contig10360:6403..64731680866405.710049-UTR-A-nodosum_M_contig10360:6403..6473Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10360 6404..6473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866405.7219388-CDS-A-nodosum_M_contig10360:6473..64831680866405.7219388-CDS-A-nodosum_M_contig10360:6473..6483Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10360 6474..6483 +
1680866405.7299886-CDS-A-nodosum_M_contig10360:6708..68151680866405.7299886-CDS-A-nodosum_M_contig10360:6708..6815Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10360 6709..6815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10360.4.1prot_A-nodosum_M_contig10360.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10360 6474..6815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10360.4.1

>prot_A-nodosum_M_contig10360.4.1 ID=prot_A-nodosum_M_contig10360.4.1|Name=mRNA_A-nodosum_M_contig10360.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=39bp
MMNDGTRVVQVPSKVKRENGRNNAIATNKAMDIAPRRP*
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mRNA from alignment at A-nodosum_M_contig10360:6404..6815+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10360.4.1 ID=mRNA_A-nodosum_M_contig10360.4.1|Name=mRNA_A-nodosum_M_contig10360.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=412bp|location=Sequence derived from alignment at A-nodosum_M_contig10360:6404..6815+ (Ascophyllum nodosum dioecious)
GCTGGCAAGGGATCGCCTGACGGTGCCCAGCGCGTTGGAATGCTGAAGAT
TCAGGCCGCTTCGTGCCGCAATGATGAATGGTAAATGATGAATGGTAAAT
GATGAGTTATAAATATGAATGATAAATAACGAATGGTAAATGATGAATGA
TGAATGATAAATTATGAATGGTAAATGATGAATGATACCAGTACAGAAAT
TGTTTTTTCTCTCTACGTCCGTTTGAGTCTCATCTGGCCCCTAAACGTGA
CTTATACAGTACCGTATCGTGTGATGATGATGATGATGATGATGATGACG
CTGAGACGGGACACGTGTTGTACAGGTACCAAGCAAGGTGAAACGAGAAA
ACGGGCGAAATAATGCAATTGCAACAAACAAGGCCATGGACATCGCCCCA
AGAAGACCATGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10360:6404..6815+

>mRNA_A-nodosum_M_contig10360.4.1 ID=mRNA_A-nodosum_M_contig10360.4.1|Name=mRNA_A-nodosum_M_contig10360.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=117bp|location=Sequence derived from alignment at A-nodosum_M_contig10360:6404..6815+ (Ascophyllum nodosum dioecious)
ATGATGAATGACGGGACACGTGTTGTACAGGTACCAAGCAAGGTGAAACG
AGAAAACGGGCGAAATAATGCAATTGCAACAAACAAGGCCATGGACATCG
CCCCAAGAAGACCATGA
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