mRNA_A-nodosum_M_contig10360.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10360.1.1
Unique NamemRNA_A-nodosum_M_contig10360.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10360.1.1 vs. uniprot
Match: D7FH13_ECTSI (Aminopeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH13_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 4.320e-13
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:    3 VNAGQMGFFKVNYTQEGWCKLSSAMQSRALPPKDRAGAVADAFALASA 146
            +NAGQ GFFKVNY + GW  LS AMQ+RA+ P DRAGAV+DAF+LA+A
Sbjct:  589 INAGQRGFFKVNYNEGGWTNLSRAMQTRAISPADRAGAVSDAFSLAAA 636
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BLAST of mRNA_A-nodosum_M_contig10360.1.1 vs. uniprot
Match: A0A2E2DRC2_9CHLR (Aminopeptidase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E2DRC2_9CHLR)

HSP 1 Score: 51.6 bits (122), Expect = 2.670e-6
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 3 
Query:    3 VNAGQMGFFKVNYTQEGWCKLSSAMQSRALPPKDRAGAVADAFALASA 146
            +N GQ GFF+VNY+ EGW KL  A+QS  L   DR G   DA+AL+ A
Sbjct:  535 INPGQTGFFRVNYSAEGWEKLVPAIQSLELSATDRLGIQNDAYALSRA 582
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BLAST of mRNA_A-nodosum_M_contig10360.1.1 vs. uniprot
Match: A0A5N9AH16_9CHLR (Aminopeptidase n=1 Tax=SAR202 cluster bacterium TaxID=2030829 RepID=A0A5N9AH16_9CHLR)

HSP 1 Score: 50.4 bits (119), Expect = 6.850e-6
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 3 
Query:    3 VNAGQMGFFKVNYTQEGWCKLSSAMQSRALPPKDRAGAVADAFAL 137
            +NAGQ GF++VNYT+EGW  +  A+Q   L   DR G   D++AL
Sbjct:  536 INAGQTGFYRVNYTEEGWSNIKKAIQEGHLSAVDRLGLQNDSYAL 580
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BLAST of mRNA_A-nodosum_M_contig10360.1.1 vs. uniprot
Match: A0A7M5UKG1_9CNID (Uncharacterized protein n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UKG1_9CNID)

HSP 1 Score: 49.7 bits (117), Expect = 1.280e-5
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 3 
Query:    6 NAGQMGFFKVNYTQEGWCKLSSAMQ--SRALPPKDRAGAVADAFALASA 146
            NAGQ GF++VNY   GW K+   ++   + L  KDRAG ++D FALA+A
Sbjct:  332 NAGQYGFYRVNYDDAGWTKMIKVLKYNHKVLDVKDRAGLISDVFALANA 380
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BLAST of mRNA_A-nodosum_M_contig10360.1.1 vs. uniprot
Match: A0A534KLB9_9EURY (Aminopeptidase n=2 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534KLB9_9EURY)

HSP 1 Score: 49.7 bits (117), Expect = 1.280e-5
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 3 
Query:    3 VNAGQMGFFKVNYTQEGWCKLSSAMQSRALPPKDRAGAVADAFALASA 146
            VNAGQ GF++VNY+Q+ W +L  A+ SR L   DR G   DA+A+  A
Sbjct:  536 VNAGQSGFYRVNYSQDEWGRLRRAVASRELDAPDRIGLQNDAYAMTRA 583
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BLAST of mRNA_A-nodosum_M_contig10360.1.1 vs. uniprot
Match: A0A2E8EZD2_9PLAN (Aminopeptidase N n=2 Tax=Bacteria TaxID=2 RepID=A0A2E8EZD2_9PLAN)

HSP 1 Score: 48.5 bits (114), Expect = 3.280e-5
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 3 
Query:    3 VNAGQMGFFKVNYTQEGWCKLSSAMQSRALPPKDRAGAVADAFALASA 146
            +N  Q GFF+VNY+ EGW KL  A+QS  L   DR G   DA+AL+ A
Sbjct:  302 INPQQTGFFRVNYSAEGWEKLIPAIQSLELSATDRLGIQNDAYALSRA 349
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BLAST of mRNA_A-nodosum_M_contig10360.1.1 vs. uniprot
Match: A0A7M5UNP7_9CNID (Aminopeptidase n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UNP7_9CNID)

HSP 1 Score: 48.1 bits (113), Expect = 4.500e-5
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 3 
Query:    6 NAGQMGFFKVNYTQEGWCKLSSAMQ--SRALPPKDRAGAVADAFALASA 146
            NAGQ GF++VNY   GW  +   ++   + L P DRAG + D FALA+A
Sbjct:  650 NAGQYGFYRVNYDDAGWANMIKVLKYNHKVLAPTDRAGLMGDVFALANA 698
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BLAST of mRNA_A-nodosum_M_contig10360.1.1 vs. uniprot
Match: A0A7M5UMV2_9CNID (Aminopeptidase n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UMV2_9CNID)

HSP 1 Score: 47.4 bits (111), Expect = 8.430e-5
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 3 
Query:    6 NAGQMGFFKVNYTQEGWCKLSSAMQ--SRALPPKDRAGAVADAFALASA 146
            NAGQ GF++VNY   GW  +   ++   + L  KDRAG ++D FALA+A
Sbjct:  646 NAGQYGFYRVNYDDAGWANMIKILKYNHKILDVKDRAGLISDVFALANA 694
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10360.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FH13_ECTSI4.320e-1368.75Aminopeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A2E2DRC2_9CHLR2.670e-654.17Aminopeptidase n=1 Tax=Chloroflexi bacterium TaxID... [more]
A0A5N9AH16_9CHLR6.850e-648.89Aminopeptidase n=1 Tax=SAR202 cluster bacterium Ta... [more]
A0A7M5UKG1_9CNID1.280e-548.98Uncharacterized protein n=2 Tax=Clytia hemisphaeri... [more]
A0A534KLB9_9EURY1.280e-550.00Aminopeptidase n=2 Tax=Euryarchaeota archaeon TaxI... [more]
A0A2E8EZD2_9PLAN3.280e-552.08Aminopeptidase N n=2 Tax=Bacteria TaxID=2 RepID=A0... [more]
A0A7M5UNP7_9CNID4.500e-546.94Aminopeptidase n=2 Tax=Clytia hemisphaerica TaxID=... [more]
A0A7M5UMV2_9CNID8.430e-546.94Aminopeptidase n=1 Tax=Clytia hemisphaerica TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10360contigA-nodosum_M_contig10360:1070..1602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size148
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866405.6675966-CDS-A-nodosum_M_contig10360:1069..11391680866405.6675966-CDS-A-nodosum_M_contig10360:1069..1139Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10360 1070..1139 +
1680866405.676787-CDS-A-nodosum_M_contig10360:1524..16011680866405.676787-CDS-A-nodosum_M_contig10360:1524..1601Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10360 1525..1601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10360.1.1prot_A-nodosum_M_contig10360.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10360 1070..1601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10360.1.1

>prot_A-nodosum_M_contig10360.1.1 ID=prot_A-nodosum_M_contig10360.1.1|Name=mRNA_A-nodosum_M_contig10360.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=49bp
RSTRGRWVSSRSTTPKRDGASSAARCSLEPCPPKTAREPSPTLLPWPLL
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mRNA from alignment at A-nodosum_M_contig10360:1070..1602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10360.1.1 ID=mRNA_A-nodosum_M_contig10360.1.1|Name=mRNA_A-nodosum_M_contig10360.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=533bp|location=Sequence derived from alignment at A-nodosum_M_contig10360:1070..1602+ (Ascophyllum nodosum dioecious)
AGGTCAACGCGGGGCAGATGGGTTTCTTCAAGGTCAACTACACCCAAGAG
GGATGGTGCAAGCTCAGCAGGTGTATTTAGGCTATGTTTTTCATCCCCCA
AATCTTTTTGAGCCTCGGGCGACGCCTCCGTTTAAGTAGGTGTATGTGTA
CTGTGTATACTTGGCATGCACCTGGTATAATATGTACATGTATATACCAT
AACTTGACCGGCGGGGGTGGATCCATGGTGAATGTACCCGTATCGCCAGA
TCACCTCTCTATCGTTCAGTTTTTACTGTGGTAAACTGTAGACTGTTAGA
ACACAAACTCTAAATCATTTTTTATTCCTCCAACAAAATATTTTAACTCT
GGAACATGACCTCTCGAAACTTCCCTTTCGCCCCCTCTTCCCCCCCCCCC
CAAAAAAAAAAACACCGTTGGTTCGGCAATTCCTGCACGCGCTCGCTAAA
TCTAGCGCGATGCAGTCTCGAGCCCTGCCCCCCAAAGACCGCGCGGGAGC
CGTCGCCGACGCTTTTGCCCTGGCCTCTGCTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10360:1070..1602+

>mRNA_A-nodosum_M_contig10360.1.1 ID=mRNA_A-nodosum_M_contig10360.1.1|Name=mRNA_A-nodosum_M_contig10360.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=147bp|location=Sequence derived from alignment at A-nodosum_M_contig10360:1070..1602+ (Ascophyllum nodosum dioecious)
AGGTCAACGCGGGGCAGATGGGTTTCTTCAAGGTCAACTACACCCAAGAG
GGATGGTGCAAGCTCAGCAGCGCGATGCAGTCTCGAGCCCTGCCCCCCAA
AGACCGCGCGGGAGCCGTCGCCGACGCTTTTGCCCTGGCCTCTGCTG
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