mRNA_A-nodosum_M_contig1035.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1035.4.1
Unique NamemRNA_A-nodosum_M_contig1035.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1035.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1035contigA-nodosum_M_contig1035:151544..152679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size555
Hectar predicted targeting categoryother localisation
Exons2
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866404.5670414-UTR-A-nodosum_M_contig1035:151543..1515491680866404.5670414-UTR-A-nodosum_M_contig1035:151543..151549Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1035 151544..151549 +
1680866404.6103086-UTR-A-nodosum_M_contig1035:152472..1526791680866404.6103086-UTR-A-nodosum_M_contig1035:152472..152679Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1035 152473..152679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866404.577333-CDS-A-nodosum_M_contig1035:151549..1517191680866404.577333-CDS-A-nodosum_M_contig1035:151549..151719Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1035 151550..151719 +
1680866404.601014-CDS-A-nodosum_M_contig1035:152300..1524721680866404.601014-CDS-A-nodosum_M_contig1035:152300..152472Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1035 152301..152472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1035.4.1prot_A-nodosum_M_contig1035.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1035 151550..152472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1035.4.1

>prot_A-nodosum_M_contig1035.4.1 ID=prot_A-nodosum_M_contig1035.4.1|Name=mRNA_A-nodosum_M_contig1035.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=114bp
MPPFTPAAVVLIREYYDIPSSTPSSDVWGHRYNNMLTYPPASEVSRRHYD
ERGRFDRRHEEITQEVTVQAISYGPGSGYRYTQPTNTVIRTERTWIDPLP
PQPFWDQYGRRVQ*
back to top

mRNA from alignment at A-nodosum_M_contig1035:151544..152679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1035.4.1 ID=mRNA_A-nodosum_M_contig1035.4.1|Name=mRNA_A-nodosum_M_contig1035.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1136bp|location=Sequence derived from alignment at A-nodosum_M_contig1035:151544..152679+ (Ascophyllum nodosum dioecious)
CAGACCATGCCGCCCTTCACTCCTGCAGCGGTGGTTTTGATCCGTGAGTA
CTACGACATACCGTCTTCAACCCCTTCGTCGGACGTGTGGGGTCATCGCT
ACAACAACATGCTGACCTACCCTCCCGCGTCGGAGGTTTCGCGTCGGCAT
TACGACGAGAGGGGAAGATTCGACAGGTGAGTTTGAATAAATGCTGCCGC
CGTAGCGACCAGCGGAGATAGACACAACACCTACGCTGTAGCATGGAAGG
CACCCAGTCGGGGGATGATATGTCTAGCGGGGCCAAGCGCGTTCTCACGT
CTTTCGAAGCCAAATACAACCCCTGAAACACTATATCAAGTCCACGGTTC
ATGAATAAATATCGGAAGAGCTTCTTTTATCGCCCAAGAATGAGTCCACG
AAAGAACAGGTAACAATCGATGTAAACCGGACACGTGTCACACACAGCGC
AAACACATCAACCCTGGAAGTACACGGTGGTCTGTGCGCATTGAGTAATG
CCTGGTAGTTCGATCACGTTCTAGAGTGTGCAAGCTTAAAGCGCACCAAA
ATCTGAACACATTTTGTGACCCTGACGCTGTCCTTGGATATCTCCATCCA
ATCACTTTGCGCCACCGGGTTGATGAGCCGAACGTTTCGTTCATTTGCAA
ATCTCGTCTGTACGTTTGGCATTCTGGCTGTCAGAAACACTGATCGAAAT
AGCCTCACCCCACAAACACAAACGATGCACTATCATCGCCGCCTTCCTCC
CATACAGGAGGCACGAAGAGATCACCCAGGAGGTTACCGTTCAAGCCATT
AGTTATGGACCTGGATCGGGATACAGGTACACCCAGCCCACGAACACTGT
AATCAGGACAGAGAGGACATGGATCGACCCCCTGCCCCCTCAGCCATTTT
GGGACCAGTACGGAAGGAGGGTTCAGTGAGAATGAAGACTGCTAGTGATG
ATACTATATCGACAGTGGGAGCACGAACTGCGTCATCAATGCCTGATTGA
CTGAGGCCAAACAGTACGAGGCAAACACTGGTCTGGTGTACATACAAAAA
ATCGGGCATATTCACGGATAAAAGTTTCTCTCTTCAGTACACAAGCGTAT
CGCCGATAGACTATATGATTGGTTGATAAGGTAGCT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1035:151544..152679+

>mRNA_A-nodosum_M_contig1035.4.1 ID=mRNA_A-nodosum_M_contig1035.4.1|Name=mRNA_A-nodosum_M_contig1035.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig1035:151544..152679+ (Ascophyllum nodosum dioecious)
ATGCCGCCCTTCACTCCTGCAGCGGTGGTTTTGATCCGTGAGTACTACGA
CATACCGTCTTCAACCCCTTCGTCGGACGTGTGGGGTCATCGCTACAACA
ACATGCTGACCTACCCTCCCGCGTCGGAGGTTTCGCGTCGGCATTACGAC
GAGAGGGGAAGATTCGACAGGAGGCACGAAGAGATCACCCAGGAGGTTAC
CGTTCAAGCCATTAGTTATGGACCTGGATCGGGATACAGGTACACCCAGC
CCACGAACACTGTAATCAGGACAGAGAGGACATGGATCGACCCCCTGCCC
CCTCAGCCATTTTGGGACCAGTACGGAAGGAGGGTTCAGTGA
back to top