mRNA_A-nodosum_M_contig10330.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10330.1.1
Unique NamemRNA_A-nodosum_M_contig10330.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10330.1.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 9.160e-25
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    1 MDTYWVEMVMFVQANFEHIPGYGLIPMIAPKDIRSCLPARFTGANEDLVAAEAIFDLLSNTAAPTVHGMDL 213
            MDTYWVE+VMF+ ANF HIP    IPM+A K+IRSCLPARF G + DL+AAEAIFD+L NTA P+V+ +DL
Sbjct:  242 MDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIRSCLPARFHGRDADLMAAEAIFDVLMNTAPPSVNDIDL 312
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BLAST of mRNA_A-nodosum_M_contig10330.1.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.280e-23
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 MDTYWVEMVMFVQANFEHIPGYGLIPMIAPKDIRSCLPARFTGANEDLVAAEAIFDLLSNT 183
            MDTYWVEMVMF+ ANFEHIPG+  IPMIA KDI +CLP RF G + DL AAEA FD++ NT
Sbjct:   80 MDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPRFNGGDADLAAAEAAFDVIKNT 140
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BLAST of mRNA_A-nodosum_M_contig10330.1.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.170e-21
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 MDTYWVEMVMFVQANFEHIPGYGLIPMIAPKDIRSCLPARFTGANEDLVAAEAIFDLLSNT 183
            MDTYWVEMVMF+ ANFEHIPG+  IPMIA KDI +CLP RF   + DL AAEA FD++ NT
Sbjct:  153 MDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPRFNRGDADLAAAEAAFDVIENT 213
[Close]
BLAST of mRNA_A-nodosum_M_contig10330.1.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-19
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 MDTYWVEMVMFVQANFEHIPGYGLIPMIAPKDIRSCLPARFTGANEDLVAAEAIFDLLSN 180
            +DTYWVEMVMF+  N++ IP +  IPMIA KDIR+CLP RF G + DL AAEA FD++ N
Sbjct:   40 IDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGGDADLAAAEAAFDVIEN 99
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BLAST of mRNA_A-nodosum_M_contig10330.1.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.940e-19
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 MDTYWVEMVMFVQANFEHIPGYGLIPMIAPKDIRSCLPARFTGANEDLVAAEAIFDLLSNT 183
            +DTYWVEMVMF+  N++ IP +  IPMIA KDIR+CLP RF G + DL AAEA FD++ NT
Sbjct:  155 IDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGGDADLAAAEAAFDVIENT 215
[Close]
BLAST of mRNA_A-nodosum_M_contig10330.1.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.690e-18
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 MDTYWVEMVMFVQANFEHIPGYGLIPMIAPKDIRSCLPARFTGANEDLVAAEAIFDLLSNT 183
            +DTYWVEMVMF+  N++ IP +  IPMIA KDIR+CLP RF G + DL AAEA FD++ NT
Sbjct:  256 IDTYWVEMVMFLHVNYKCIPAFKDIPMIAAKDIRTCLPPRFNGGDADLAAAEAAFDVIENT 316
[Close]
BLAST of mRNA_A-nodosum_M_contig10330.1.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.800e-18
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 MDTYWVEMVMFVQANFEHIPGYGLIPMIAPKDIRSCLPARFTGANEDLVAAEAIFDLLSNT 183
            +DTYWVEMVMF+  N++ IP +  IPMIA KDIR+CLP RF G + DL AAEA FD++ NT
Sbjct:  553 IDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGGDADLAAAEATFDVIENT 613
[Close]
BLAST of mRNA_A-nodosum_M_contig10330.1.1 vs. uniprot
Match: A0A6H5JB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB56_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 7.840e-16
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 MDTYWVEMVMFVQANFEHIPGYGLIPMIAPKDIRSCLPARFTGANEDLVAAEAIFDL 171
            +DTYWVEM+MF+ ANF+H+P +  IP+I  K+IR  LPARFTG + +L AAEA FD+
Sbjct: 1219 VDTYWVEMIMFLHANFKHVPDFKEIPVIESKNIRKALPARFTGVDAELAAAEAAFDM 1275
[Close]
BLAST of mRNA_A-nodosum_M_contig10330.1.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.680e-15
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 MDTYWVEMVMFVQANFEHIPGYGLIPMIAPKDIRSCLPARFTGANEDLVAAEAIFDLLSNTAAP 192
            ++ YWVEMVMF+ ANF+ IP Y  IP I  KDIR CLPA+F G +EDL++AE   D L N   P
Sbjct:  782 VEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIRKCLPAKFKGTDEDLLSAEMALDPLRNNTPP 845
[Close]
BLAST of mRNA_A-nodosum_M_contig10330.1.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.320e-14
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    1 MDTYWVEMVMFVQANFEHIPGYGLIPMIAPKDIRSCLPARFTGANEDLVAAEAIFDLLSNTAAPTVHGM 207
            +D YWVEMV+F++ANF+ IPGY  IP +  K IR CLPA+F G NE L+ AE   D L N   P    +
Sbjct:  437 LDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIRECLPAKFKGTNEYLLDAEMALDPLENKTPPNTSAI 505
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10330.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JZQ5_9PHAE9.160e-2567.61Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KSA7_9PHAE1.280e-2370.49Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JN28_9PHAE1.170e-2168.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP16_9PHAE1.100e-1961.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE2.940e-1962.30Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KBM2_9PHAE3.690e-1862.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ46_9PHAE3.800e-1862.30Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB56_9PHAE7.840e-1659.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJJ9_9PHAE2.680e-1556.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KFQ8_9PHAE2.320e-1450.72Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10330contigA-nodosum_M_contig10330:2206..2430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size225
Hectar predicted targeting categoryother localisation
Exons1
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866404.0387013-CDS-A-nodosum_M_contig10330:2205..24301680866404.0387013-CDS-A-nodosum_M_contig10330:2205..2430Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10330 2206..2430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10330.1.1prot_A-nodosum_M_contig10330.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10330 2206..2430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10330.1.1

>prot_A-nodosum_M_contig10330.1.1 ID=prot_A-nodosum_M_contig10330.1.1|Name=mRNA_A-nodosum_M_contig10330.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
MDTYWVEMVMFVQANFEHIPGYGLIPMIAPKDIRSCLPARFTGANEDLVA
AEAIFDLLSNTAAPTVHGMDLDEE*
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mRNA from alignment at A-nodosum_M_contig10330:2206..2430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10330.1.1 ID=mRNA_A-nodosum_M_contig10330.1.1|Name=mRNA_A-nodosum_M_contig10330.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig10330:2206..2430- (Ascophyllum nodosum dioecious)
ATGGACACATACTGGGTGGAGATGGTGATGTTTGTCCAGGCCAACTTCGA
GCACATTCCGGGGTACGGGCTCATCCCCATGATCGCTCCGAAGGACATCC
GCTCGTGTCTGCCCGCGCGGTTCACGGGAGCAAACGAGGACTTGGTGGCC
GCTGAAGCCATCTTCGACCTCCTCAGCAACACCGCGGCACCGACCGTGCA
TGGCATGGACTTAGACGAGGAGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10330:2206..2430-

>mRNA_A-nodosum_M_contig10330.1.1 ID=mRNA_A-nodosum_M_contig10330.1.1|Name=mRNA_A-nodosum_M_contig10330.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig10330:2206..2430- (Ascophyllum nodosum dioecious)
ATGGACACATACTGGGTGGAGATGGTGATGTTTGTCCAGGCCAACTTCGA
GCACATTCCGGGGTACGGGCTCATCCCCATGATCGCTCCGAAGGACATCC
GCTCGTGTCTGCCCGCGCGGTTCACGGGAGCAAACGAGGACTTGGTGGCC
GCTGAAGCCATCTTCGACCTCCTCAGCAACACCGCGGCACCGACCGTGCA
TGGCATGGACTTAGACGAGGAGTAA
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