mRNA_A-nodosum_M_contig1033.42.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1033.42.1
Unique NamemRNA_A-nodosum_M_contig1033.42.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1033.42.1 vs. uniprot
Match: A0A0D1DPX6_USTMA (Retrotransposon HobS hobase n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1DPX6_USTMA)

HSP 1 Score: 65.1 bits (157), Expect = 5.310e-10
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:   82 ENDVWIADSGASCHMTHDRTRMYNVRPLPPGPETTTIGDRRKIKVEYIGNMDVIFHGKTGQR--ITLIDVAYVPGLGFNLYS 321
            +N+ WI DSGAS HMT D+T      P P   +   + D R + V  +GN+ ++     G R  ITL DV +VPGLG NL+S
Sbjct:  325 QNETWIIDSGASRHMTGDKTLFSTYGPSPV--QEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFS 404
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BLAST of mRNA_A-nodosum_M_contig1033.42.1 vs. uniprot
Match: Q2EPY7_USTMD (Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2EPY7_USTMD)

HSP 1 Score: 65.1 bits (157), Expect = 5.380e-10
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:   82 ENDVWIADSGASCHMTHDRTRMYNVRPLPPGPETTTIGDRRKIKVEYIGNMDVIFHGKTGQR--ITLIDVAYVPGLGFNLYS 321
            +N+ WI DSGAS HMT D+T      P P   +   + D R + V  +GN+ ++     G R  ITL DV +VPGLG NL+S
Sbjct:  324 QNETWIIDSGASRHMTGDKTLFSTYGPSPV--QEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFS 403
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BLAST of mRNA_A-nodosum_M_contig1033.42.1 vs. uniprot
Match: A0A7D9I5T4_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I5T4_PARCT)

HSP 1 Score: 60.1 bits (144), Expect = 2.810e-8
Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:   55 VFILQSGSSE-NDV-WIADSGASCHMTHDRTRMYNVRPLPPGPETTTIGDRRKIKVEYIGN--MDVIFHGKTGQRITLIDVAYVPGLGFNLYSL 324
            VF +  G+++ +D  W+ DSGAS HMT +++ + N +     PE+  +GD R ++    GN  MD++F G+  +R  L +V YVP L  NL+S+
Sbjct:  227 VFTVSEGNAKFSDCHWLIDSGASSHMTKEKSVLVNYQQFGE-PESVALGDGRVVQALGSGNVHMDMLFSGRKSKRGVLCNVLYVPKLTSNLFSV 319
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BLAST of mRNA_A-nodosum_M_contig1033.42.1 vs. uniprot
Match: A0A7D9F0C3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F0C3_PARCT)

HSP 1 Score: 59.3 bits (142), Expect = 5.470e-8
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   55 VFILQSGSSE-NDV-WIADSGASCHMTHDRTRMYNVRPLPPGPETTTIGDRRKIKVEYIGN--MDVIFHGKTGQRITLIDVAYVPGLGFNLYSL 324
            VF +  G+++ +D  W+ DSGAS HMT +++ + N +     PE+  +GD R ++    GN  MD++F G   +R  L +V YVP L  NL+S+
Sbjct:   89 VFTVSEGNAKLSDCHWLIDSGASSHMTKEKSVLVNYQQFGE-PESVALGDGRVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSV 181
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BLAST of mRNA_A-nodosum_M_contig1033.42.1 vs. uniprot
Match: A0A6S7JQN7_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JQN7_PARCT)

HSP 1 Score: 59.3 bits (142), Expect = 5.530e-8
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   55 VFILQSGSSE-NDV-WIADSGASCHMTHDRTRMYNVRPLPPGPETTTIGDRRKIKVEYIGN--MDVIFHGKTGQRITLIDVAYVPGLGFNLYSL 324
            VF +  G+++ +D  W+ DSGAS HMT +++ + N +     PE+  +GD R ++    GN  MD++F G   +R  L +V YVP L  NL+S+
Sbjct:  253 VFTVSEGNAKLSDCHWLIDSGASSHMTKEKSVLVNYQQFGE-PESVALGDGRVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSV 345
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BLAST of mRNA_A-nodosum_M_contig1033.42.1 vs. uniprot
Match: A0A314KVV2_NICAT (Uncharacterized protein (Fragment) n=2 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A314KVV2_NICAT)

HSP 1 Score: 56.6 bits (135), Expect = 2.110e-7
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:   61 ILQSGSSENDVWIADSGASCHMTHDRTRMYNVRPLPPGPETTTIGDRRKIKVEYIGNMDVIFHGKTGQRITLIDVAYVPGLGFNLYSL 324
            +  S SS  D WI DSGA+ HMTH+++ + NV+ L   P   T+ +  K+KV  IG  DVI   K     +L  V +VP   FNL S+
Sbjct:  116 LCDSSSSNADTWILDSGATNHMTHNKSILTNVKTLVY-PYLVTLPNGYKVKVTLIG--DVILSPK----FSLKKVLFVPNFKFNLISV 196
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BLAST of mRNA_A-nodosum_M_contig1033.42.1 vs. uniprot
Match: A0A0N1ICY1_PAPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A0N1ICY1_PAPMA)

HSP 1 Score: 57.4 bits (137), Expect = 2.700e-7
Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   85 NDVWIADSGASCHMTHDRTRMYNVRPLPPGPETTTIGDRRKIKVEYIGNMDVIFHGKTGQRITLIDVAYVPGLGFNLYSL 324
            ++ W  DSGA+CHMT++++ + N     P  +  T+ +  K+  E  G+++++  G T Q   LI+V YVPGL  NL S+
Sbjct:  277 SNAWYIDSGATCHMTNNKSLLQNYSVHTP--KLVTVANNNKMYSEGHGDVEILLKGHT-QPTKLIEVIYVPGLSTNLISV 353
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BLAST of mRNA_A-nodosum_M_contig1033.42.1 vs. uniprot
Match: A0A1Y1HRY4_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRY4_KLENI)

HSP 1 Score: 57.0 bits (136), Expect = 3.740e-7
Identity = 29/78 (37.18%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   94 WIADSGASCHMTHDRTRMYNVRPLPPGPETTTIGDRRKIKVEYIGNMDVIFHGKTGQRITLI-DVAYVPGLGFNLYSL 324
            W+ DSGAS H+T DR++++++RP P G +    G++  +KVE +G+ ++      G ++ L+ +V  V G+G NL SL
Sbjct:  307 WLLDSGASHHLTGDRSKLFDLRPAPEGLQVE-FGNKGMLKVEALGSAELNCVTPEGTQVVLLKNVRLVRGVGANLASL 383
[Close]
BLAST of mRNA_A-nodosum_M_contig1033.42.1 vs. uniprot
Match: A0A1J6JNI4_NICAT (Uncharacterized protein (Fragment) n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6JNI4_NICAT)

HSP 1 Score: 55.8 bits (133), Expect = 4.090e-7
Identity = 36/88 (40.91%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:   61 ILQSGSSENDVWIADSGASCHMTHDRTRMYNVRPLPPGPETTTIGDRRKIKVEYIGNMDVIFHGKTGQRITLIDVAYVPGLGFNLYSL 324
            +  S SS  D WI DSGA+ HMTH+++ + NV+ L   P   T+ +  K+KV  IG  DVI   K      L  V +VP   FNL S+
Sbjct:  116 LCDSSSSNADTWILDSGATNHMTHNKSILTNVKTLVY-PYLVTLPNGYKVKVTLIG--DVILSPK----FILKKVLFVPSFKFNLISV 196
[Close]
BLAST of mRNA_A-nodosum_M_contig1033.42.1 vs. uniprot
Match: UPI000904E1D8 (uncharacterized protein LOC109222335 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904E1D8)

HSP 1 Score: 56.6 bits (135), Expect = 4.820e-7
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:   61 ILQSGSSENDVWIADSGASCHMTHDRTRMYNVRPLPPGPETTTIGDRRKIKVEYIGNMDVIFHGKTGQRITLIDVAYVPGLGFNLYSL 324
            +  S SS  D WI DSGA+ HMTH+++ + NV+ L   P   T+ +  K+KV  IG  DVI   K      L +V +VP   FNL S+
Sbjct:  331 LCDSSSSNADTWILDSGATNHMTHNKSILTNVKTLVY-PYLVTLPNGYKVKVTLIG--DVILSPK----FILKNVLFVPSFKFNLISV 411
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1033.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D1DPX6_USTMA5.310e-1042.68Retrotransposon HobS hobase n=1 Tax=Ustilago maydi... [more]
Q2EPY7_USTMD5.380e-1042.68Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2... [more]
A0A7D9I5T4_PARCT2.810e-837.23Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A7D9F0C3_PARCT5.470e-837.23Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7JQN7_PARCT5.530e-837.23Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A314KVV2_NICAT2.110e-740.91Uncharacterized protein (Fragment) n=2 Tax=Nicotia... [more]
A0A0N1ICY1_PAPMA2.700e-736.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Y1HRY4_KLENI3.740e-737.18Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A1J6JNI4_NICAT4.090e-740.91Uncharacterized protein (Fragment) n=1 Tax=Nicotia... [more]
UPI000904E1D84.820e-740.91uncharacterized protein LOC109222335 n=1 Tax=Nicot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1033contigA-nodosum_M_contig1033:252346..252669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5270.UM05424P0
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size324
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.38e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3V2N5@5204|Basidiomycota
DescriptionRetrotransposon gag protein
Cds size324
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866404.0041196-CDS-A-nodosum_M_contig1033:252345..2526691680866404.0041196-CDS-A-nodosum_M_contig1033:252345..252669Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1033 252346..252669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1033.42.1prot_A-nodosum_M_contig1033.42.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1033 252346..252669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1033.42.1

>prot_A-nodosum_M_contig1033.42.1 ID=prot_A-nodosum_M_contig1033.42.1|Name=mRNA_A-nodosum_M_contig1033.42.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=108bp
PSESVVENVTVPGIYLHSVFILQSGSSENDVWIADSGASCHMTHDRTRMY
NVRPLPPGPETTTIGDRRKIKVEYIGNMDVIFHGKTGQRITLIDVAYVPG
LGFNLYSL
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mRNA from alignment at A-nodosum_M_contig1033:252346..252669-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1033.42.1 ID=mRNA_A-nodosum_M_contig1033.42.1|Name=mRNA_A-nodosum_M_contig1033.42.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at A-nodosum_M_contig1033:252346..252669- (Ascophyllum nodosum dioecious)
CCGAGTGAAAGCGTTGTAGAGAATGTTACTGTACCTGGTATTTACCTTCA
CAGTGTGTTCATATTGCAGTCGGGCAGCAGTGAGAATGATGTTTGGATTG
CCGACAGCGGCGCGTCGTGCCACATGACCCACGACAGGACTAGAATGTAT
AATGTGAGACCCCTTCCGCCCGGTCCCGAAACAACCACGATCGGGGACCG
TCGGAAAATAAAAGTAGAGTATATCGGGAACATGGATGTGATTTTCCACG
GGAAGACTGGTCAGAGGATCACATTGATTGATGTCGCATACGTTCCAGGT
TTAGGATTTAACCTGTACTCGCTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1033:252346..252669-

>mRNA_A-nodosum_M_contig1033.42.1 ID=mRNA_A-nodosum_M_contig1033.42.1|Name=mRNA_A-nodosum_M_contig1033.42.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at A-nodosum_M_contig1033:252346..252669- (Ascophyllum nodosum dioecious)
CCGAGTGAAAGCGTTGTAGAGAATGTTACTGTACCTGGTATTTACCTTCA
CAGTGTGTTCATATTGCAGTCGGGCAGCAGTGAGAATGATGTTTGGATTG
CCGACAGCGGCGCGTCGTGCCACATGACCCACGACAGGACTAGAATGTAT
AATGTGAGACCCCTTCCGCCCGGTCCCGAAACAACCACGATCGGGGACCG
TCGGAAAATAAAAGTAGAGTATATCGGGAACATGGATGTGATTTTCCACG
GGAAGACTGGTCAGAGGATCACATTGATTGATGTCGCATACGTTCCAGGT
TTAGGATTTAACCTGTACTCGCTA
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