mRNA_A-nodosum_M_contig1033.25.5 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1033.25.5
Unique NamemRNA_A-nodosum_M_contig1033.25.5
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1033.25.5 vs. uniprot
Match: A0A6H5KXN7_9PHAE (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN7_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 9.580e-90
Identity = 152/236 (64.41%), Postives = 173/236 (73.31%), Query Frame = 1
Query:   13 QWQKTMLLSVILMPSVLFPVMFLLNLVAGHYNTVTAVPLKAMVNMVLIWMFVSFPLGVAGSIFGRHWGGKANFPCRVNSIPRQIPEAAWYANPTLVVMVAGLLPFGSIFIEMYFILTSLWGYMYYXXXXXXXXXXXXXXXXXXXXXIVAVY-----TNYHWQWVAFLSAGSTAIYVFLYAVYYFGFHTQQKGFLQVSFYFGYMGLFCAALAAMCGSIGVLGSTVFVKQIYRNIKVD 705
            QWQKTM+LS +++PS+LFPV+F+LNLVA HYNTV  +P  A+  M LIW+FVSFPL VAGS+FGRHWGGK NFPCRVNSIPR IPE+ WY+ P +VV +AG+LPFGSIFIEMYFIL SLW Y YY                     IVAVY      NYHWQWV+FLSA STA YVFLY+ YY  F T+Q GF+Q+SFYFGYMGLFCAAL          GSTVFVKQIYRNIKVD
Sbjct:  375 QWQKTMVLSAVMVPSILFPVVFVLNLVAMHYNTVNTIPFMAVFKMALIWVFVSFPLCVAGSMFGRHWGGKGNFPCRVNSIPRPIPESVWYSQPNVVVPLAGILPFGSIFIEMYFILASLWAYKYYYVYGFVLLVFAILVVVLVCTSIVAVYFVLNGENYHWQWVSFLSAASTAGYVFLYSAYYLWFKTRQSGFIQISFYFGYMGLFCAALXXXXXXXXXXGSTVFVKQIYRNIKVD 610          
BLAST of mRNA_A-nodosum_M_contig1033.25.5 vs. uniprot
Match: D8LEX9_ECTSI (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX9_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 1.170e-89
Identity = 149/231 (64.50%), Postives = 167/231 (72.29%), Query Frame = 1
Query:   28 MLLSVILMPSVLFPVMFLLNLVAGHYNTVTAVPLKAMVNMVLIWMFVSFPLGVAGSIFGRHWGGKANFPCRVNSIPRQIPEAAWYANPTLVVMVAGLLPFGSIFIEMYFILTSLWGYMYYXXXXXXXXXXXXXXXXXXXXXIVAVY-----TNYHWQWVAFLSAGSTAIYVFLYAVYYFGFHTQQKGFLQVSFYFGYMGLFCAALAAMCGSIGVLGSTVFVKQIYRNIKVD 705
            M+LS +++PSVLFPV+FLLNLVA HYNTV  +P  A++ M LIW+FVSFPL VAGS+FGRHWGGK NFPCRVNSIPR IPE+ WY  P +VV +AG+LPFGSIFIEMYFILTSLW  MYY                     IVAVY      NYHWQWV+FLSA STA YVFLY+ YY  F T Q GF+Q+SFYFGYMGLFCAA           GSTVFVKQIYRNIKVD
Sbjct:    1 MMLSAVMVPSVLFPVVFLLNLVAMHYNTVNTIPFMAVLKMALIWVFVSFPLCVAGSMFGRHWGGKGNFPCRVNSIPRPIPESVWYLQPNVVVPLAGILPFGSIFIEMYFILTSLWANMYYYVYGFVLLVFAILVVVLVCTTIVAVYFVLNGENYHWQWVSFLSAASTAGYVFLYSGYYLWFKTHQSGFMQISFYFGYMGLFCAAXXXXXXXXXXXGSTVFVKQIYRNIKVD 231          
BLAST of mRNA_A-nodosum_M_contig1033.25.5 vs. uniprot
Match: A0A835YQT7_9STRA (Transmembrane 9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT7_9STRA)

HSP 1 Score: 277 bits (708), Expect = 6.130e-81
Identity = 134/236 (56.78%), Postives = 168/236 (71.19%), Query Frame = 1
Query:   13 QWQKTMLLSVILMPSVLFPVMFLLNLVAGHYNTVTAVPLKAMVNMVLIWMFVSFPLGVAGSIFGRHWGGKANFPCRVNSIPRQIPEAAWYANPTLVVMVAGLLPFGSIFIEMYFILTSLWGYMYYXXXXXXXXXXXXXXXXXXXXXIVAVY-----TNYHWQWVAFLSAGSTAIYVFLYAVYYFGFHTQQKGFLQVSFYFGYMGLFCAALAAMCGSIGVLGSTVFVKQIYRNIKVD 705
            QWQ+ MLL+V+L+P+++  V+  LN VA +Y+T+  +P   +V M LIW+FV+FPL V G +FGRHWGGKA+FPCRVNSI R IP   WY  P  V+ + G+LPFGSIFIEMYFI TS W Y +Y                     IVAVY      NYHWQW++FL++GSTA YVFLY++YYF F T+  GFLQ+SFYFGYMGLFC AL  +CG+IG+ GS+VFVKQIY+NIKVD
Sbjct:  365 QWQRCMLLTVVLLPALVITVLSFLNTVAVYYDTINTIPFMVIVKMALIWLFVAFPLAVVGCMFGRHWGGKASFPCRVNSIARPIPPGPWYTRPAAVIPLTGILPFGSIFIEMYFIFTSFWNYKFYYVYGFMLLVYAILSVVLVCATIVAVYFVLNAENYHWQWISFLASGSTAGYVFLYSIYYFYFKTEMFGFLQISFYFGYMGLFCVALFVLCGTIGLAGSSVFVKQIYKNIKVD 600          
BLAST of mRNA_A-nodosum_M_contig1033.25.5 vs. uniprot
Match: A0A7S4DBZ3_HETAK (Transmembrane 9 superfamily member n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBZ3_HETAK)

HSP 1 Score: 248 bits (633), Expect = 1.090e-71
Identity = 119/236 (50.42%), Postives = 157/236 (66.53%), Query Frame = 1
Query:   13 QWQKTMLLSVILMPSVLFPVMFLLNLVAGHYNTVTAVPLKAMVNMVLIWMFVSFPLGVAGSIFGRHWGGKANFPCRVNSIPRQIPEAAWYANPTLVVMVAGLLPFGSIFIEMYFILTSLWGYMYYXXXXXXXXXXXXXXXXXXXXXIVAVY-----TNYHWQWVAFLSAGSTAIYVFLYAVYYFGFHTQQKGFLQVSFYFGYMGLFCAALAAMCGSIGVLGSTVFVKQIYRNIKVD 705
            QWQK MLL+V L+P+ L   +  LN VA +Y+T   +P   ++ M  IW+FVSFPL V+G++FGRHWGG+A+FPCRVN+ PR IP   WY  P + + + G+LPFGSIFIEMYF+ TS W Y +Y                     +VA Y      NYHWQW++F ++GST+ YVFLY++YYF F TQ  GFLQ+SFYFGYM +FC  L  + G+IG  G++ FV+ IYRN+KVD
Sbjct:  214 QWQKAMLLTVALLPTALALAVSALNAVAAYYDTTNTIPFGVILKMFAIWVFVSFPLAVSGTMFGRHWGGRADFPCRVNTFPRPIPLGKWYTKPWVFIPLTGILPFGSIFIEMYFVFTSFWNYKFYYVYGFMLLVYMILAVVTMCTAVVATYFVLNAENYHWQWISFTASGSTSGYVFLYSIYYFLFKTQMSGFLQISFYFGYMAIFCFGLFLLTGTIGHFGASKFVRAIYRNVKVD 449          
BLAST of mRNA_A-nodosum_M_contig1033.25.5 vs. uniprot
Match: W7TF26_9STRA (Transmembrane 9 superfamily member n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TF26_9STRA)

HSP 1 Score: 246 bits (629), Expect = 1.710e-69
Identity = 119/236 (50.42%), Postives = 159/236 (67.37%), Query Frame = 1
Query:   13 QWQKTMLLSVILMPSVLFPVMFLLNLVAGHYNTVTAVPLKAMVNMVLIWMFVSFPLGVAGSIFGRHWGGKANFPCRVNSIPRQIPEAAWYANPTLVVMVAGLLPFGSIFIEMYFILTSLWGYMYYXXXXXXXXXXXXXXXXXXXXXIVAVY-----TNYHWQWVAFLSAGSTAIYVFLYAVYYFGFHTQQKGFLQVSFYFGYMGLFCAALAAMCGSIGVLGSTVFVKQIYRNIKVD 705
            QWQKTMLL+V L P ++  V+F LN++A +Y+T  A+ L  +  +  IW+FVS PL V G++FGRHW GKA+FPCR+NS+ R IP   WY +P L+  V G+LPFGSIFIEMYFI TS W Y +Y                     IVAVY      NYHWQW++F+++GSTA YVFLY++YYF   TQ  G LQ +FYFGY  +FCA L  +CG++GV+G ++FV++IY  +K+D
Sbjct:  366 QWQKTMLLTVFLFPVLVLTVVFGLNIIAEYYDTTHALHLSTIFKIFAIWLFVSLPLTVVGTLFGRHWAGKADFPCRINSMARPIPLGPWYTHPALIAAVTGILPFGSIFIEMYFIFTSFWNYKFYYVYHFLLLVYLILMVVSICTTIVAVYFLLNVENYHWQWLSFMASGSTAGYVFLYSIYYFAVKTQMTGLLQTAFYFGYTFVFCAGLFLLCGALGVIGGSLFVRRIYSGLKID 601          
BLAST of mRNA_A-nodosum_M_contig1033.25.5 vs. uniprot
Match: A0A7R9U3Y7_9STRA (Transmembrane 9 superfamily member n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3Y7_9STRA)

HSP 1 Score: 241 bits (616), Expect = 6.250e-69
Identity = 123/238 (51.68%), Postives = 156/238 (65.55%), Query Frame = 1
Query:   13 QWQKTMLLSVILMPSVLFPVMFLLNLVAGHYNTVTAVPLKAMVNMVLIWMFVSFPLGVAGSIFGRHWGGKANFPCRVNSIPRQIPEAA-WYANPTLVVMVAGLLPFGSIFIEMYFILTSLWGY-MYYXXXXXXXXXXXXXXXXXXXXXIVAVY-----TNYHWQWVAFLSAGSTAIYVFLYAVYYFGFHTQQKGFLQVSFYFGYMGLFCAALAAMCGSIGVLGSTVFVKQIYRNIKVD 705
            +WQ+TML +++L P V+  V+  LN++A  Y+T   +    + N+ LIW+F+SFPL V G++FGRHWGGK  FPCRVN+ PR +PEA  WYA    V+   GLLPFGSIFIEMYFI TS W Y  +Y                     +VAVY      N+ WQW++F +AGSTA+YVF YAVYYF F T  KGFLQV+FYFGYM +FC  L  +CG++GV GS  FV+ IY NIKVD
Sbjct:  237 KWQQTMLFTILLFPGVIVGVVSFLNIIAMSYSTSNVLSFTVVANLFLIWIFISFPLAVIGTLFGRHWGGKNTFPCRVNTYPRDLPEATPWYAKWYFVIPATGLLPFGSIFIEMYFIFTSFWNYNKFYYVYGFMLLVYLILMVVTICTTVVAVYFVLNAENHKWQWLSFNAAGSTAVYVFAYAVYYFYFKTSMKGFLQVAFYFGYMSVFCIGLYILCGTVGVAGSMAFVRTIYMNIKVD 474          
BLAST of mRNA_A-nodosum_M_contig1033.25.5 vs. uniprot
Match: A0A1V9ZBI9_9STRA (Transmembrane 9 superfamily member n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZBI9_9STRA)

HSP 1 Score: 244 bits (622), Expect = 1.890e-68
Identity = 117/235 (49.79%), Postives = 150/235 (63.83%), Query Frame = 1
Query:   16 WQKTMLLSVILMPSVLFPVMFLLNLVAGHYNTVTAVPLKAMVNMVLIWMFVSFPLGVAGSIFGRHWGGKANFPCRVNSIPRQIPEAAWYANPTLVVMVAGLLPFGSIFIEMYFILTSLWGYMYYXXXXXXXXXXXXXXXXXXXXXIVAVY-----TNYHWQWVAFLSAGSTAIYVFLYAVYYFGFHTQQKGFLQVSFYFGYMGLFCAALAAMCGSIGVLGSTVFVKQIYRNIKVD 705
            W K M+LS+ L+PSV+F  +F +N ++  Y T  A+P   +V ++L+W FVS PL V G+I GRH   K  FPCRVN  PR++PEA WY  P  ++M+ G+LPFGSIFIEMYFI  S W Y +Y                     IV  Y      NYHW W +FL++GSTAIYVF+YA+Y++ F T   GFLQ  FYFGYMGLFC A   MCG+IG  GS+ F K+IYRNIK++
Sbjct:  371 WIKAMILSISLLPSVIFVSLFFINAISVAYGTTYAIPFVTIVQVILVWFFVSCPLSVLGTILGRHGAAKRGFPCRVNKFPREVPEARWYLRPAALIMLTGVLPFGSIFIEMYFIFASFWNYKFYYVYGFMLLVFLILTVVTLCVTIVCTYFLLNSENYHWHWTSFLASGSTAIYVFIYAIYFYFFKTNMSGFLQTCFYFGYMGLFCFAFYIMCGTIGYFGSSTFTKRIYRNIKIE 605          
BLAST of mRNA_A-nodosum_M_contig1033.25.5 vs. uniprot
Match: A0A067BM17_SAPPC (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BM17_SAPPC)

HSP 1 Score: 238 bits (608), Expect = 7.550e-68
Identity = 117/235 (49.79%), Postives = 148/235 (62.98%), Query Frame = 1
Query:   16 WQKTMLLSVILMPSVLFPVMFLLNLVAGHYNTVTAVPLKAMVNMVLIWMFVSFPLGVAGSIFGRHWGGKANFPCRVNSIPRQIPEAAWYANPTLVVMVAGLLPFGSIFIEMYFILTSLWGYMYYXXXXXXXXXXXXXXXXXXXXXIVAVY-----TNYHWQWVAFLSAGSTAIYVFLYAVYYFGFHTQQKGFLQVSFYFGYMGLFCAALAAMCGSIGVLGSTVFVKQIYRNIKVD 705
            W K M+LS+ L+PSV+F  +F +N ++  Y T  A+P   +V ++L+W FVS PL V G+I GRH   K  FPCRVN  PR++PEA WY  P ++ ++ G+LPFGSIFIEMYFI  S W Y +Y                     IV  Y      NYHW W +FLSAGSTA+YVF YA+Y++   T   GFLQ  FYFGYMGLFC A   MCGSIG  GS+ F K+IYRNIK++
Sbjct:  233 WIKAMVLSIALLPSVVFVSLFFINALSVAYGTTYAIPFVTIVQVILVWFFVSCPLSVLGTILGRHGAAKKGFPCRVNKFPREVPEARWYLRPVVLGLLTGILPFGSIFIEMYFIFASFWNYKFYYVYGFMLLVFLILSVVTVCVTIVCTYFLLNSENYHWHWTSFLSAGSTALYVFAYAIYFYFCKTNMSGFLQTCFYFGYMGLFCFAFFIMCGSIGYYGSSAFTKRIYRNIKIE 467          
BLAST of mRNA_A-nodosum_M_contig1033.25.5 vs. uniprot
Match: A0A444E945_ENSVE (Transmembrane 9 superfamily member n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444E945_ENSVE)

HSP 1 Score: 227 bits (578), Expect = 1.820e-66
Identity = 110/231 (47.62%), Postives = 147/231 (63.64%), Query Frame = 1
Query:   28 MLLSVILMPSVLFPVMFLLNLVAGHYNTVTAVPLKAMVNMVLIWMFVSFPLGVAGSIFGRHWGGKANFPCRVNSIPRQIPEAAWYANPTLVVMVAGLLPFGSIFIEMYFILTSLWGYMYYXXXXXXXXXXXXXXXXXXXXXIVAVY-----TNYHWQWVAFLSAGSTAIYVFLYAVYYFGFHTQQKGFLQVSFYFGYMGLFCAALAAMCGSIGVLGSTVFVKQIYRNIKVD 705
            M+L+  L P + F + F+LN +A  Y ++ A+P   MV + +IW F+SFPL + G++ GR+W G  N PCRV +IPR IPE  WY  P+++ ++ GLLPFGSIFIEMYF+ TS W Y  Y                     IV  Y      NYHWQW +F SA STA+YV+LY+VYY+   T+  GF Q SFYFGY+ +FC  L  +CG++G LGST+FV++IYRNIK D
Sbjct:    1 MILAASLFPFMCFGIGFILNTIAIFYGSLAAIPFGTMVVVFIIWAFISFPLALLGTVVGRNWSGSPNNPCRVKTIPRPIPEKKWYLTPSIISLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILIIVTMCVTIVGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSVYYYYMKTKMSGFFQTSFYFGYILMFCLGLGILCGAVGYLGSTLFVRRIYRNIKCD 231          
BLAST of mRNA_A-nodosum_M_contig1033.25.5 vs. uniprot
Match: A0A427A5K3_ENSVE (Transmembrane 9 superfamily member n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427A5K3_ENSVE)

HSP 1 Score: 226 bits (576), Expect = 3.560e-66
Identity = 110/231 (47.62%), Postives = 146/231 (63.20%), Query Frame = 1
Query:   28 MLLSVILMPSVLFPVMFLLNLVAGHYNTVTAVPLKAMVNMVLIWMFVSFPLGVAGSIFGRHWGGKANFPCRVNSIPRQIPEAAWYANPTLVVMVAGLLPFGSIFIEMYFILTSLWGYMYYXXXXXXXXXXXXXXXXXXXXXIVAVY-----TNYHWQWVAFLSAGSTAIYVFLYAVYYFGFHTQQKGFLQVSFYFGYMGLFCAALAAMCGSIGVLGSTVFVKQIYRNIKVD 705
            M+L+  L P + F + F+LN +A  Y ++ A+P   MV + +IW F+SFPL + G++ GR+W G  N PCRV +IPR IPE  WY  P+++ ++ GLLPFGSIFIEMYF+ TS W Y  Y                     IV  Y      NYHWQW +F SA STA+YV+LY+VYY+   T+  GF Q SFYFGY  +FC  L  +CG++G LGST+FV++IYRNIK D
Sbjct:    1 MILAASLFPFMCFGIGFILNTIAIFYGSLAAIPFGTMVVVFIIWAFISFPLALLGTVVGRNWSGSPNNPCRVKTIPRPIPEKKWYLTPSIISLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILIIVTMCVTIVGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSVYYYYMKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSTLFVRRIYRNIKCD 231          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1033.25.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXN7_9PHAE9.580e-9064.41Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
D8LEX9_ECTSI1.170e-8964.50Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
A0A835YQT7_9STRA6.130e-8156.78Transmembrane 9 superfamily member n=1 Tax=Tribone... [more]
A0A7S4DBZ3_HETAK1.090e-7150.42Transmembrane 9 superfamily member n=1 Tax=Heteros... [more]
W7TF26_9STRA1.710e-6950.42Transmembrane 9 superfamily member n=2 Tax=Monodop... [more]
A0A7R9U3Y7_9STRA6.250e-6951.68Transmembrane 9 superfamily member n=1 Tax=Pinguio... [more]
A0A1V9ZBI9_9STRA1.890e-6849.79Transmembrane 9 superfamily member n=2 Tax=Saprole... [more]
A0A067BM17_SAPPC7.550e-6849.79Transmembrane 9 superfamily member (Fragment) n=1 ... [more]
A0A444E945_ENSVE1.820e-6647.62Transmembrane 9 superfamily member n=1 Tax=Ensete ... [more]
A0A427A5K3_ENSVE3.560e-6647.62Transmembrane 9 superfamily member n=1 Tax=Ensete ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1033contigA-nodosum_M_contig1033:140675..146086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEX9
Preferred nameTM9SF3
PFAMsEMP70
Model size1965
Max annot lvl2759|Eukaryota
KEGG koko:K02639,ko:K17087
KEGG Pathwayko00195,map00195
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0012505,GO:0016020,GO:0016021,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
Exons4
Evalue5.62e-97
EggNOG OGsKOG1278@1|root,KOG1277@2759|Eukaryota
Descriptionsecretion of lysosomal enzymes
Cds size699
COG categoryI
BRITEko00000,ko00001,ko00194,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1033.25.5prot_A-nodosum_M_contig1033.25.5Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1033 140684..144829 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866403.5857768-UTR-A-nodosum_M_contig1033:140674..1406831680866403.5857768-UTR-A-nodosum_M_contig1033:140674..140683Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1033 140675..140683 +
1680866403.6412475-UTR-A-nodosum_M_contig1033:144829..1460861680866403.6412475-UTR-A-nodosum_M_contig1033:144829..146086Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1033 144830..146086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866403.6037064-CDS-A-nodosum_M_contig1033:140683..1409521680866403.6037064-CDS-A-nodosum_M_contig1033:140683..140952Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1033 140684..140952 +
1680866403.6123424-CDS-A-nodosum_M_contig1033:143110..1433001680866403.6123424-CDS-A-nodosum_M_contig1033:143110..143300Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1033 143111..143300 +
1680866403.6210597-CDS-A-nodosum_M_contig1033:143671..1438081680866403.6210597-CDS-A-nodosum_M_contig1033:143671..143808Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1033 143672..143808 +
1680866403.63256-CDS-A-nodosum_M_contig1033:144726..1448291680866403.63256-CDS-A-nodosum_M_contig1033:144726..144829Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1033 144727..144829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1033.25.5

>prot_A-nodosum_M_contig1033.25.5 ID=prot_A-nodosum_M_contig1033.25.5|Name=mRNA_A-nodosum_M_contig1033.25.5|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=233bp
MQWQKTMLLSVILMPSVLFPVMFLLNLVAGHYNTVTAVPLKAMVNMVLIW
MFVSFPLGVAGSIFGRHWGGKANFPCRVNSIPRQIPEAAWYANPTLVVMV
AGLLPFGSIFIEMYFILTSLWGYMYYYVFGFMLLVFVIMVVVVVCTAIVA
VYTNYHWQWVAFLSAGSTAIYVFLYAVYYFGFHTQQKGFLQVSFYFGYMG
LFCAALAAMCGSIGVLGSTVFVKQIYRNIKVD*
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mRNA from alignment at A-nodosum_M_contig1033:140675..146086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1033.25.5 ID=mRNA_A-nodosum_M_contig1033.25.5|Name=mRNA_A-nodosum_M_contig1033.25.5|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5412bp|location=Sequence derived from alignment at A-nodosum_M_contig1033:140675..146086+ (Ascophyllum nodosum dioecious)
TACAACACAATGCAGTGGCAGAAGACGATGTTGCTGTCGGTGATCCTGAT GCCGTCGGTACTGTTCCCGGTGATGTTCTTGCTCAACTTGGTGGCTGGTC ACTACAACACCGTCACAGCGGTCCCCTTGAAGGCGATGGTCAACATGGTC CTTATCTGGATGTTTGTTTCGTTCCCGCTGGGAGTTGCTGGGAGCATTTT CGGCCGGCACTGGGGGGGGAAGGCGAACTTCCCCTGCAGAGTGAACAGCA TTCCGCGACAGATTCCGGAGGCGGCATGGTGAGAGTTGGGATGGCGTGGG GCAGCCCCCGTCGTGAACGTGCCCTATCCATCCTGCTAGGATTCAGTTCC GACACTTAACCCCCCCCCCCCCCGAGATCACGAGCGGGATTCGGTATTTG ATAGGCCTGTGGCTTACTAACTTGGTTGTCCTTTTATAGCTGTTTATACC ACGCAGAAGGCGTGTATCAAAAATAATAAACTTAAGCCTCCACTCCAATC CTAACAAGAATCGATGCTGACGTGTATACTGTAGCAGGAATGAAAGCAGG AATGGTCCCGGCGCGCGTCGGAAAGCGCCTGTTGGACGAGTGCTGTTTTC GGTAAAATGCGTCTAATTCCGCTCGAGTAGAGCTCTACTGCGCGTAGGTA GACTGTAACAGTGTTCCTAAATATCACGAGGAAAAAAATGGAGGGAGTTT CATGTTTTTTTTCCAACTTTTTTTGTCTCTGACGTGTTCAAAGGTGTAGT TTTCAAATATTTTGTTTCCGAGTAATAGGGGAAGAAATGCACAACTAGGA TGAAGGGCTGCTGGAAAAACAGGTTTCGTTCGATTCGGTACGATTTGATT CCAAGGGGGTACAGCCAACATATATATACATATAAGTGGATCGATGATAA TGGCGCACCGTCTTTTGGGGCAACGGTTGAGAGATACTATTAAAAAAAAA TATAGCCAGATCCGTTGTGAGGGCGTCCGAACTGATTCGAGGGGCATTTA AAATTTGTTCTCCTCTGAAAATTTGTTCACCTCTGTAGAGGAATCCCCGT TTTTACTTTCTTACACTGGTTGAATGAAGGTAATCTTTTGCTGCTGCATA GAGCTATTTATATTATATGTAGGTTAATCATGCTCCTACAGCATAGCCTC CGACACTATCTGTATCACACATTATCGTGTCCACTACATAGCAATAGTGG GTGTGGGAAAAGAGAGGCGCATTGAAAAATGGTCCATGGTGATACAGTTC CTGAAAAAACAGCACCCGTTACTCGAACTACCTTGGGGACTACTGGCCTT GTGCAGGCGGGCTTTCGGCAGGGAACGCCTTCGGTACGCAACTGCGTGAC CTGATAAATTCGGGACTGACCCGATGGCGATTGACGGTACAAATAAATAG ACGCCGCCGCGGATAGCGGGAGGAATCCCGTGAGTAAGCACCAGATGGAG AAAGAGCAGGCTGACGCGGACGGGCTGGCCAAACCTGTCCCGTGATACCA ATTTCTCAGGCGCGAACAGGGACAGGGAAATTTTTTCCCTGTTCATCTGA CCACGAGCAGGATTGGCAACCTTACCCGGTTGATCCCTACTCTTCTATAA GTGATGACCATATATACATGCATACATCATAGTCATTCAGACGACTGGAT GCAACCCATTTATGCTATAAATACGCACTTTGTGAAAAGGTCACCATGGA CCAATGAAAATACTGTTAATACCCCACAATAGACCATCTTCTGTACCCTC TATACTTTATACTGCTCTTACTACATAAAGGCTGCGGTCGACCGCCGGCC AGAGGGCTCTATAAATGTATATAATATAATACTGAAGTAGTTCGTGCTCT CGAAGATAAAAATAGTTAACATATAAACAAGTACCGTTCTAAGGTTCTTG AGGCAACAACAACCCCCGACATTATACTGTTGACCCAAGGTTACTACCAG TGGGGAACCCGTTTAAATACCATGTAGTGGCTTTGTATTTATAGCCTTTT TAATGTATATTACTACTACCATGTGTGATGGTGTGTACTATACATCGTCT CTGGTTTATTTTCAATGTTTTTCTGGTGTCCCTGCATGGCGATTAATGTA AATGTACAGTATAACGGTGGGCTTCTCCCCGACATTATACTGTTGACCCA ATGTTATCTGCATCGGGGAACCTGTTTAAATGCCATGAAGAGGTTTTGTA TTTGCAGCCTTTGATCCCACCTAAACGTTTTGACATTTTCCCCCCCATAA CCGGGGGATACTCAGAAGGTCTAGGTGTGCTCTGATTTTTCTTTAAACAA CAAAACACCGATACGCGGTTGACATGGGTGTGGCACAAAATGAAAGGTGT GGGGTGTATGTACTGTAGCGCTTTAACTCCCTTCTTTTAATGCTCCTGGC GCTAACCCATTTTTTGTGTTGTGGTCTTTGTTGCAGGTACGCTAACCCGA CGTTAGTGGTGATGGTTGCCGGACTGCTCCCCTTCGGCAGCATCTTCATC GAGATGTACTTCATCCTGACGTCCCTTTGGGGATACATGTACTACTACGT CTTCGGGTTCATGTTGCTCGTGTTCGTGATCATGGTCGTGGTGGTGGTCT GCACGGCGATCGTGGCCGTGTACACCGTCCTCAATGCGGAGGCGAGAAAG GAGGGAGAGAGAACATGACCATGGGGGTTGTGATGTTGGAGGCGTTTTTA GGAGGGGGAACGGGGGACCAATGCCTCTCTTGTTCTTGCGCAGTGAGTTG GTTTTGTGTAAGCGATGCCAGGCGTTCGAAATATAGGGTGAAGAGATTCA CGCCTGTGCAGAGTTATCCATCTACTTTGACCGTTTCATAAATGTACGCC TCTCGCGGTAAAATAACTCTCACTAAAATAATCCCAATGTCTTGTTAAAG TCTGTATTACCTTAACCTGGCGTGGCAACCCCGCCCCTTGCACTCTCCCC CCCGCCTGCCTCTATACGCTTCGGGCATCCATTGCACGGTGGTACAGAAC TATCACTGGCAGTGGGTGGCCTTCCTTAGTGCGGGATCTACCGCTATTTA CGTGTTCCTGTACGCTGTGTACTACTTCGGTTTCCACACGCAACAGAAGG GTTTCCTTCAAGTCAGTTTCTACTTCGGTTACATGTAAGTGGACGGACGA CGGGACGCAGATATTTTTTCGTGTATTGGGAAATGTCAGCAGTTTGTTAA AAAAATGCGGTGGAAGTTGAGAAACAGCGCGGATTGGAGAAAACACACAC ACATTCAAGTATCATTGATCCCCCCTTGAGAGGATCAATGCGAGTGGCAT AGAATTAGTAGGATGACGGGGCCGGATTGCGCGGTGACGTGCAGTCTAAT AAATACACACACACACACACGCACACTCTTGGCGGGACCAATGCGAGTGA CATATAATGACTAGGATGACAGGGCCGAATTGCGCGATTATGTGCAATTG AATACAGTAAATACACACACACAACATGTAGATGAAGCTCGTTCCCCATT CGCGAAGAGCAGAGAGAGGGAGACGATTGTGCTCTGCTCCGATGTTGTGA ACTATTAATAGTCATAGTCAGGCAGCATAGAATCGAAAAAGTGTGTTCTG TCTAATGATATACTTGAAGCATTTATTTCATCAAGTAGATTCGCGGACCT TGGTAGGCGTTTGTATATGTGGTGCGATTATCAGCTAAAAATGAGAAAAC AAGAACAATCCAAGGCTGTAGATCGTACGCAAAGTCTCAGCCAAGTTGCG GAGCTGGCTGTAGAATCGATTTCCTCAAGCCCAAAGTTGGTTCGGGACGT GAAGAGAGCGCTCGTGAGGCGGGCCGGGATGACCTGGGCCAGAAAGGGAA GTAGCGAGGGTGAAGAGGCATTTGCCAAAGGGGGATTTAGATTACTGGGC AACCCGGATCGAAGAGGAGACGGTGATGGGTCGAAGGGACGTACGTCAAA GGGGAGTACGGATGTGCCCGTAACTCCGTCCATGTTTGTTTTTTTTGGAT GATCGTCCGTCGCTGGGACACTTCCAACCGCTTTCTCTCGTGCGCTGCGC AGGGGGCTCTTCTGTGCGGCTCTGGCTGCAATGTGCGGCTCCATCGGGGT TCTGGGGAGCACCGTCTTCGTGAAGCAAATCTACCGGAACATTAAGGTGG ACTGACGTGGCGGCGACGACGGGGACGAGGGTCATCTTTTAGGGTCACCT TTGGCACGAACGACGGGACAGAAAGATAAGAAAAAAACAAAACTTCCGCT TGCGTCCCGTGGGACGTGGATTTCGAGGTGACTGACTTTTTGGAGGCGTT TCTGGTCGACGGTGGGCGAAACAGCGGTGGGGAGCCGCGTAGGGTTCTCG GGGAAACGTTCCATGTCCGCCTATCGGGTGTGGGCGTGATCTGCGGCGCA AGGCCGGACTCCAAGCCTTGAGGCTCCCGAGACAGCGCGGAGAAGGCGAT GAGCTTTGCGCTACGGATAACGAGCGCCGGTGGTATCTAGAGCACCTTTT ATACCGTTGTACGCTGTAATAGCCAACCGTAGGTGGGGGAAGGGTCTGTC GCCTCCTATTTTGACGAACCTCGAAGGTGCGTCGAAGGCCTTGCTCAACG TCGGTATGTGTCTTATTTTCGGTTTGTAGTTCAGGATGTATTTTGTGCTT AATGAGGGTCATGTGTGCGTGGGTGCATTTGGTCCTCCCGTGGAAGATGT CGATCGAGTGTGTGAAGCTGGGGGTCATCTATAGGATTTTTCGGTAAGGG CCAAAACGGCTGCCGTCGGGCGAGAGAGTACAGCAGCAGCAGCACGAAAG GATCCCGTGTCCCTGTATGGTAAAAAAATAATGACTGAATTGAATGAGCG ACTTTGTAAACGGAGGGAGGAGGGGCGGGGCGGGGTGACCGGAGCAACTC ATGGATGTTTCAGGTGCCCACCTATGTTTGGTTACGTTGCGTATTCATTC TCCGATCCTAGCGAGCAACAGCTGTACATGTCTCGTGGTTGGTACCGAAC ACATTTCATTTGGATTGCCCGGTCTTCACGCCCTGTCTTTTTCCCGCAAT TTCGTGAGAAAATGCCTCCACTCACGCGAAAGCCACTGCTGATATTTATG TAGACTATGTGTGTTGTTCGTTATGCTTTGAGGAGGGGGGGTGGAGGGGA TATGATAAGATAGTCGTAGGTTGGCGGTTACGAGACACACGTAACGCCTT CGCCTATAATAGTATTTTTTTGCCTTGTCCTTTCTATTAATAATAGATAC AGAGTGATAGATAATTGTTCCGAGAGTTATCGATCCCGCTAAGGTTCTGG TTTCAAGACTCGAACCCGCAGTTCAGAGTCAGCACTGTGAGAATGTCGAG TTCGCCAGTGCTGCGTGCGCAAGTGCAGTTTCGTTTTGAGGTATATGAGG TGTGTTGGCATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1033:140675..146086+

>mRNA_A-nodosum_M_contig1033.25.5 ID=mRNA_A-nodosum_M_contig1033.25.5|Name=mRNA_A-nodosum_M_contig1033.25.5|organism=Ascophyllum nodosum dioecious|type=CDS|length=699bp|location=Sequence derived from alignment at A-nodosum_M_contig1033:140675..146086+ (Ascophyllum nodosum dioecious)
ATGCAGTGGCAGAAGACGATGTTGCTGTCGGTGATCCTGATGCCGTCGGT
ACTGTTCCCGGTGATGTTCTTGCTCAACTTGGTGGCTGGTCACTACAACA
CCGTCACAGCGGTCCCCTTGAAGGCGATGGTCAACATGGTCCTTATCTGG
ATGTTTGTTTCGTTCCCGCTGGGAGTTGCTGGGAGCATTTTCGGCCGGCA
CTGGGGGGGGAAGGCGAACTTCCCCTGCAGAGTGAACAGCATTCCGCGAC
AGATTCCGGAGGCGGCATGGTACGCTAACCCGACGTTAGTGGTGATGGTT
GCCGGACTGCTCCCCTTCGGCAGCATCTTCATCGAGATGTACTTCATCCT
GACGTCCCTTTGGGGATACATGTACTACTACGTCTTCGGGTTCATGTTGC
TCGTGTTCGTGATCATGGTCGTGGTGGTGGTCTGCACGGCGATCGTGGCC
GTGTACACCAACTATCACTGGCAGTGGGTGGCCTTCCTTAGTGCGGGATC
TACCGCTATTTACGTGTTCCTGTACGCTGTGTACTACTTCGGTTTCCACA
CGCAACAGAAGGGTTTCCTTCAAGTCAGTTTCTACTTCGGTTACATGGGG
CTCTTCTGTGCGGCTCTGGCTGCAATGTGCGGCTCCATCGGGGTTCTGGG
GAGCACCGTCTTCGTGAAGCAAATCTACCGGAACATTAAGGTGGACTGA
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