mRNA_A-nodosum_M_contig10318.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10318.3.1
Unique NamemRNA_A-nodosum_M_contig10318.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10318.3.1 vs. uniprot
Match: A0A6H5JQL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQL7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.800e-22
Identity = 65/134 (48.51%), Postives = 78/134 (58.21%), Query Frame = 2 
Query:   14 LPSLLLLLLLADGQRVTSVSSP-ASSLALHPMEEAEGGGDDLVPEIALAAALVALXXXXXXXXXXXMLSDAEPDEELLRVKHKRRHRKKRDVKSCAWAQLLVDEDLKDETSITAKQFRGDFRLPYPFFLRLVEM 412
            LPSL LL     G   T ++ P  SSL   PM E  G GD L+P  ALA ALVAL              D   D  L R K  R  RK+++V+ CAWAQ+L D+DL+D  SIT+KQFR DFR+PY FFLRLV +
Sbjct:    5 LPSLALL---PGGGSATRLTPPYISSLGSLPMAET-GVGDALLPATALAVALVALDEVQRNDLSQEEKEDRASD--LPRPKLSRGQRKRKNVEKCAWAQMLEDKDLEDSNSITSKQFRLDFRVPYSFFLRLVAL 132
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BLAST of mRNA_A-nodosum_M_contig10318.3.1 vs. uniprot
Match: A0A6H5JBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL1_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.160e-20
Identity = 61/123 (49.59%), Postives = 73/123 (59.35%), Query Frame = 2 
Query:   38 LLADGQRVTSVSSP-ASSLALHPMEEAEGGGDDLVPEIALAAALVALXXXXXXXXXXXMLSDAEPDEELLRVKHKRRHRKKRDVKSCAWAQLLVDEDLKDETSITAKQFRGDFRLPYPFFLRL 403
            LLA G   T ++ P  SSL   PM E  G GD L+P  ALA  LVAL              D  PD  L R K  R  RK++DV+ CAWA++L D+DL+D  SIT+KQFR DFR+PY FFLRL
Sbjct:   10 LLAGGGSATRLTPPYISSLDSLPMAET-GVGDALLPATALAVVLVALDEVQRNDLSQEEEEDRAPD--LPRPKLSRGQRKRKDVEKCAWAKMLEDKDLEDSNSITSKQFRLDFRVPYSFFLRL 129
[Close]
BLAST of mRNA_A-nodosum_M_contig10318.3.1 vs. uniprot
Match: A0A6H5JSI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.750e-18
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 2 
Query:  212 LSDAEPDEELLRVKHKRRHRKKRDVKSCAWAQLLVDEDLKDETSITAKQFRGDFRLPYPFFLRLVEM 412
            L + +P  +L R +  R  R+K+DV++CAWAQLL D+DL+D TSITAKQFRGDFR+P+ FFLRLV +
Sbjct:   19 LLEEDPANDLPRERLTRSQRQKKDVETCAWAQLLEDKDLEDSTSITAKQFRGDFRVPFTFFLRLVAL 85
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BLAST of mRNA_A-nodosum_M_contig10318.3.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.850e-18
Identity = 55/102 (53.92%), Postives = 61/102 (59.80%), Query Frame = 2 
Query:  113 AEGGGDDLVPEIALAAALVALXXXXXXXXXXXMLSDAEPDEELLRVKHKRRHRK--KRDVKSCAWAQLLVDEDLKDETSITAKQFRGDFRLPYPFFLRLVEM 412
            AEG   DL PE+ALAAAL AL           MLSDAE                  K D  +CAWAQ+L DEDLKD TSI AK+FR DFR+PYPFFLRLVE+
Sbjct:    5 AEGRVKDLHPEVALAAALAALDDIQQDD----MLSDAEXXXXXXXXXXXXXXXXXXKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVEL 102
[Close]
BLAST of mRNA_A-nodosum_M_contig10318.3.1 vs. uniprot
Match: A0A6H5KLY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.680e-18
Identity = 64/135 (47.41%), Postives = 78/135 (57.78%), Query Frame = 2 
Query:   14 LPSLLLLLLLADGQRVTSV--SSPASSLALHPMEEAEGGGDDLVPEIALAAALVALXXXXXXXXXXXMLSDAEPDEELLRVKHKRRHRKKRDVKSCAWAQLLVDEDLKDETSITAKQFRGDFRLPYPFFLRLVEM 412
            LPSL LL   + G  +T    SSP S      +  A  G D L+P  ALA ALVA+     XXXXXX                    R+++DV++CAWAQLL D+DL+D TSITAKQFR DFR+PY FFLRLV +
Sbjct:    5 LPSLALLAGSSSGACLTLTFNSSPGS------LRMAAAGMDALLPATALAVALVAVDEVQRXXXXXXXXXXXXXXXXXXXXXXXXXQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVAL 133
[Close]
BLAST of mRNA_A-nodosum_M_contig10318.3.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.610e-17
Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = 2 
Query:  104 MEEAEGGGDDLVPEIALAAALVALXXXXXXXXXXXMLSDAEPDE--ELLRVKHKRRHRKKRDVKSCAWAQLLVDEDLKDETSITAKQFRGDFRLPYPFFLRLVEM 412
            M E   G D L+P  ALA ALVAL            LS  E D   +L R +  R  R+++DVK+CAWAQ+L D+DL+D  S T+KQFR DFR+PY FFLRLV +
Sbjct:    1 MAETGVGDDALLPATALAVALVALDEVQRND-----LSQEEEDTAPDLPRPRLSRTQRQRKDVKTCAWAQMLEDKDLEDSNSRTSKQFRLDFRVPYSFFLRLVAL 100
[Close]
BLAST of mRNA_A-nodosum_M_contig10318.3.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.390e-17
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 2 
Query:  125 GDDLVPEIALAAALVALXXXXXXXXXXXMLSDAEPDEELLRVKHKRRHRKKRDVKSCAWAQLLVDEDLKDETSITAKQFRGDFRLPYPFFLRLVEM 412
            G  L+P  ALA ALVA+            L + +P  +L   +  R  R+++DV++CAWAQLL D+DL+D TSITAKQFR DFR+PY FFLRLV +
Sbjct:   52 GCALLPARALAVALVAVDEVQRNDLSQQDLLEEDPASDLPFERLARSQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVAL 147
[Close]
BLAST of mRNA_A-nodosum_M_contig10318.3.1 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.460e-17
Identity = 60/133 (45.11%), Postives = 75/133 (56.39%), Query Frame = 2 
Query:   14 LPSLLLLLLLADGQRVTSVSSP-ASSLALHPMEEAEGGGDDLVPEIALAAALVALXXXXXXXXXXX--MLSDAEPDEELLRVKHKRRHRKKRDVKSCAWAQLLVDEDLKDETSITAKQFRGDFRLPYPFFLRL 403
            LPSL LL   A     T ++ P  SSL   PM E  G GD L+P  AL A  +A              +L + +   +L R K  R  RK++DV+ CAWAQ+L D+DL D  SIT+KQFR DFR+PY FFLRL
Sbjct:    5 LPSLALL---AGAGSATRLTPPYISSLGSLPMAET-GVGDALLPATALLAVTLAALDKVQRNDLSQKDLLEEEDRAPDLPRPKLNRGQRKRKDVEKCAWAQMLEDKDLDDSNSITSKQFRLDFRVPYSFFLRL 133
[Close]
BLAST of mRNA_A-nodosum_M_contig10318.3.1 vs. uniprot
Match: A0A6H5JKX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKX3_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.760e-16
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 2 
Query:  119 GGGDDLVPEIALAAALVALXXXXXXXXXXXMLSDAEPDEELLRVKHKRRHRKKRDVKSCAWAQLLVDEDLKDETSITAKQFRGDFRLPYPFFLRLVEM 412
            G GD L+P  AL  ALVAL              D  PD  L R K  R  RK++DV+ CAWAQ+L D+D +D  SIT+KQFR DFRLP+ FFLR V +
Sbjct:    5 GVGDALLPGTALTVALVALDEVQRNDLSQEEEEDRAPD--LPRPKLSRGQRKRKDVEKCAWAQMLEDKDPEDSNSITSKQFRLDFRLPFSFFLRPVAL 100
[Close]
BLAST of mRNA_A-nodosum_M_contig10318.3.1 vs. uniprot
Match: A0A6H5KG98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG98_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.880e-16
Identity = 63/152 (41.45%), Postives = 78/152 (51.32%), Query Frame = 2 
Query:   14 LPSLLLLLLLADGQRVTSVSSP-ASSLALHPMEEAEGGGDDLVPEIALA------------------AALVALXXXXXXXXXXXMLSDAEPDEELLRVKHKRRHRKKRDVKSCAWAQLLVDEDLKDETSITAKQFRGDFRLPYPFFLRLVEM 412
            LPSL LL   A     T ++ P  SS+    M E  G GD L+P +A+A                   ALVAL              D  PD  L R K  R  RK++DV+ C WAQ+L D+DL+D  SIT+KQFR DFR+PY FFLRLV +
Sbjct:    5 LPSLALL---AGAGSATRLTPPYISSVGSLRMAET-GVGDALLPALAVALVALXXXXXXXXXXXXXXVALVALDEVQRNDLLQEEDEDRAPD--LPRPKLSRGQRKRKDVEKCVWAQMLEDKDLEDSNSITSKQFRLDFRVPYSFFLRLVAL 150
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10318.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JQL7_9PHAE3.800e-2248.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBL1_9PHAE3.160e-2049.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSI1_9PHAE2.750e-1859.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE4.850e-1853.92Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLY4_9PHAE7.680e-1847.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE1.610e-1749.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L0X4_9PHAE2.390e-1750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFR8_9PHAE4.460e-1745.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKX3_9PHAE1.760e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG98_9PHAE1.880e-1641.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10318contigA-nodosum_M_contig10318:13798..14209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size412
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866400.6280205-CDS-A-nodosum_M_contig10318:13797..141061680866400.6280205-CDS-A-nodosum_M_contig10318:13797..14106Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10318 13798..14106 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866400.6365163-UTR-A-nodosum_M_contig10318:14106..142091680866400.6365163-UTR-A-nodosum_M_contig10318:14106..14209Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10318 14107..14209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10318.3.1prot_A-nodosum_M_contig10318.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10318 13798..14106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10318.3.1

>prot_A-nodosum_M_contig10318.3.1 ID=prot_A-nodosum_M_contig10318.3.1|Name=mRNA_A-nodosum_M_contig10318.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=103bp
MEEAEGGGDDLVPEIALAAALVALEEVENDEDDDDMLSDAEPDEELLRVK
HKRRHRKKRDVKSCAWAQLLVDEDLKDETSITAKQFRGDFRLPYPFFLRL
VEM
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mRNA from alignment at A-nodosum_M_contig10318:13798..14209-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10318.3.1 ID=mRNA_A-nodosum_M_contig10318.3.1|Name=mRNA_A-nodosum_M_contig10318.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=412bp|location=Sequence derived from alignment at A-nodosum_M_contig10318:13798..14209- (Ascophyllum nodosum dioecious)
CATGCTGGTCTAGCTGCCATCACTGCTGCTGCTGCTGCTGCTCGCGGACG
GTCAGCGTGTAACTTCTGTGTCTTCGCCCGCCAGCAGCCTGGCCCTTCAT
CCGATGGAAGAAGCAGAGGGCGGTGGCGATGACCTCGTGCCAGAAATTGC
GCTGGCCGCGGCGTTGGTTGCTCTCGAAGAGGTCGAAAACGACGAAGACG
ACGACGACATGTTGTCAGATGCCGAGCCTGACGAAGAACTGCTGCGCGTG
AAGCACAAGCGAAGGCACAGGAAAAAGAGAGACGTTAAGTCGTGTGCTTG
GGCACAGCTGCTCGTTGATGAAGACCTGAAGGATGAGACGAGCATAACGG
CGAAGCAGTTTCGAGGGGACTTTCGCCTCCCCTACCCATTTTTCTTGCGG
CTGGTGGAGATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10318:13798..14209-

>mRNA_A-nodosum_M_contig10318.3.1 ID=mRNA_A-nodosum_M_contig10318.3.1|Name=mRNA_A-nodosum_M_contig10318.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=309bp|location=Sequence derived from alignment at A-nodosum_M_contig10318:13798..14209- (Ascophyllum nodosum dioecious)
ATGGAAGAAGCAGAGGGCGGTGGCGATGACCTCGTGCCAGAAATTGCGCT
GGCCGCGGCGTTGGTTGCTCTCGAAGAGGTCGAAAACGACGAAGACGACG
ACGACATGTTGTCAGATGCCGAGCCTGACGAAGAACTGCTGCGCGTGAAG
CACAAGCGAAGGCACAGGAAAAAGAGAGACGTTAAGTCGTGTGCTTGGGC
ACAGCTGCTCGTTGATGAAGACCTGAAGGATGAGACGAGCATAACGGCGA
AGCAGTTTCGAGGGGACTTTCGCCTCCCCTACCCATTTTTCTTGCGGCTG
GTGGAGATG
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