mRNA_A-nodosum_M_contig1031.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1031.9.1
Unique NamemRNA_A-nodosum_M_contig1031.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1031.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1031contigA-nodosum_M_contig1031:11301..11542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size231
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866398.3435636-UTR-A-nodosum_M_contig1031:11300..113811680866398.3435636-UTR-A-nodosum_M_contig1031:11300..11381Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1031 11301..11381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866398.3570054-CDS-A-nodosum_M_contig1031:11381..114491680866398.3570054-CDS-A-nodosum_M_contig1031:11381..11449Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 11382..11449 -
1680866398.3653307-CDS-A-nodosum_M_contig1031:11460..115421680866398.3653307-CDS-A-nodosum_M_contig1031:11460..11542Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 11461..11542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1031.9.1prot_A-nodosum_M_contig1031.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1031 11382..11542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1031.9.1

>prot_A-nodosum_M_contig1031.9.1 ID=prot_A-nodosum_M_contig1031.9.1|Name=mRNA_A-nodosum_M_contig1031.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=50bp
SSDPLLVCLQARPDLKKLKCTFTSRFHARARPISNQGITPALFFEIYQY*
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mRNA from alignment at A-nodosum_M_contig1031:11301..11542-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1031.9.1 ID=mRNA_A-nodosum_M_contig1031.9.1|Name=mRNA_A-nodosum_M_contig1031.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=242bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:11301..11542- (Ascophyllum nodosum dioecious)
AGTAGCGACCCACTATTAGTCTGCCTGCAGGCCAGACCAGACTTGAAAAA
ATTAAAGTGCACTTTCACGTCACGTTTCCATGGCGACAGCAAGCTAGGGC
CCGACCGATTTCGAACCAGGGGATAACGCCAGCTCTTTTCTTTGAAATAT
ACCAGTACTAATGACGTCAGAATTGGACGGAAAATGCCGAGCGGGCGGCA
GAATACCAGCGTCGGGGGGGAACTTGCGAGGGGGGAACCGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1031:11301..11542-

>mRNA_A-nodosum_M_contig1031.9.1 ID=mRNA_A-nodosum_M_contig1031.9.1|Name=mRNA_A-nodosum_M_contig1031.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=150bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:11301..11542- (Ascophyllum nodosum dioecious)
AGTAGCGACCCACTATTAGTCTGCCTGCAGGCCAGACCAGACTTGAAAAA
ATTAAAGTGCACTTTCACGTCACGTTTCCATGCTAGGGCCCGACCGATTT
CGAACCAGGGGATAACGCCAGCTCTTTTCTTTGAAATATACCAGTACTAA
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